genome.fa.s21.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  117  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36916349--36916410	29	2.2	27	78	16	63	56	4	0	38	1.21
36917684--36917742	24	2.3	25	80	11	66	18	3	10	67	1.33
36918045--36918608	50	11.3	50	71	3	447	23	18	23	34	1.97
36918004--36918649	100	6.5	100	88	1	884	24	20	22	33	1.97
36919926--36919976	7	7.0	7	77	22	52	15	13	0	70	1.17
36919926--36919959	13	2.5	14	90	4	52	14	14	0	70	1.17
36919942--36919978	15	2.3	17	90	9	60	13	10	0	75	1.04
36922886--36923289	109	3.7	109	83	1	497	25	16	27	30	1.96
36924776--36924852	21	3.7	21	75	6	84	29	29	29	10	1.90
36924776--36924827	20	2.5	21	84	3	70	28	34	28	7	1.85
36941725--36941751	7	3.9	7	100	0	54	44	29	0	25	1.54
36947168--36947229	24	2.6	24	77	10	72	25	20	30	22	1.98
36947284--36947462	24	7.5	24	89	2	254	23	21	39	15	1.92
36954673--36954722	25	2.0	25	84	0	64	30	0	6	64	1.18
36957337--36957552	46	4.8	45	85	0	189	18	22	17	41	1.90
36957429--36957596	46	3.7	46	87	0	230	16	20	19	44	1.87
36957429--36957597	91	1.8	92	89	1	268	15	20	19	44	1.87
36957426--36957680	45	5.6	45	78	4	219	18	20	19	41	1.90
36957388--36957680	91	3.2	90	79	5	216	18	21	18	41	1.90
36968633--36968709	40	1.9	40	89	0	118	40	27	19	12	1.88
36968836--36969063	106	2.1	108	86	4	318	40	14	10	33	1.82
36970371--36970417	19	2.5	19	92	0	85	42	10	8	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36970827--36970851	8	3.1	8	100	0	50	36	0	24	40	1.55
36973584--36973817	43	5.5	42	80	4	227	25	17	24	32	1.97
36973636--36973817	86	2.1	86	86	4	251	25	20	24	29	1.99
36974932--36975096	41	4.0	41	91	0	267	22	27	19	30	1.98
36980022--36980106	42	2.0	42	100	0	170	41	25	11	21	1.87
36982506--36982687	41	4.4	41	92	0	292	21	26	20	30	1.98
36986339--36986479	39	3.6	39	85	0	201	29	3	21	44	1.69
36997854--36997890	15	2.4	16	90	4	58	64	5	5	24	1.36
36998100--36998149	12	4.1	12	78	2	55	68	2	10	20	1.29
37008440--37008514	20	3.7	20	68	18	55	30	25	29	14	1.95
37008446--37008534	41	2.2	41	83	0	115	28	25	30	15	1.96
37008668--37008718	21	2.4	21	80	0	66	29	11	31	27	1.92
37011202--37011280	21	3.8	21	85	6	99	31	20	29	18	1.97
37023963--37023991	15	1.9	15	100	0	58	34	6	13	44	1.71
37023896--37024084	104	1.8	104	95	0	342	41	11	19	28	1.85
37032281--37032368	45	1.9	46	81	2	106	38	5	22	32	1.78
37032372--37032407	6	5.8	6	90	3	54	55	0	27	16	1.42
37037833--37037895	25	2.4	27	82	10	69	12	6	7	73	1.25
37041723--37041767	19	2.4	19	88	7	65	35	0	6	57	1.25
37041723--37041768	18	2.4	19	82	10	58	34	0	6	58	1.24
37042679--37042833	77	2.0	77	100	0	310	37	23	21	17	1.94
37042884--37042910	9	3.0	9	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37046878--37046939	25	2.6	22	79	16	70	29	4	8	58	1.48
37046884--37046936	25	2.1	25	92	0	88	28	5	7	58	1.48
37048318--37048368	24	2.1	24	85	3	66	56	5	3	33	1.42
37052437--37052504	19	3.6	18	80	9	64	44	2	1	51	1.25
37052473--37052516	22	1.9	22	86	9	61	38	0	4	56	1.20
37054213--37054237	8	3.1	8	100	0	50	88	0	12	0	0.53
37054758--37054794	18	2.1	18	89	0	56	45	21	10	21	1.82
37055221--37055247	14	1.9	14	100	0	54	22	0	37	40	1.54
37055358--37055454	41	2.4	41	85	1	133	12	25	20	41	1.87
37055358--37055471	41	2.8	40	78	2	122	14	25	21	39	1.90
37060912--37060965	15	3.5	15	80	5	54	59	0	3	37	1.15
37064382--37064425	21	2.1	21	87	8	63	36	4	36	22	1.75
37065044--37065077	18	2.0	17	88	11	52	41	11	0	47	1.40
37072953--37073420	152	3.0	154	89	6	707	43	3	11	41	1.58
37073901--37073973	38	1.9	38	94	0	128	31	12	6	49	1.67
37075395--37075444	20	2.3	20	80	10	55	26	6	12	56	1.58
37082699--37082747	4	12.2	4	91	0	62	24	28	0	46	1.53
37085969--37086202	42	5.6	42	88	3	328	20	20	25	32	1.98
37085969--37086202	84	2.8	84	90	0	369	20	20	25	32	1.98
37086133--37086272	70	2.0	70	88	0	208	22	19	22	35	1.96
37086091--37086314	112	2.0	112	91	0	358	22	19	22	35	1.96
37086203--37086340	42	3.3	42	90	0	213	22	19	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37086049--37086338	154	1.9	154	90	0	463	22	20	22	35	1.96
37087108--37087530	152	2.8	148	83	9	543	40	5	10	43	1.62
37089947--37090017	37	1.9	37	94	0	124	36	11	23	28	1.89
37090781--37090857	33	2.6	29	79	16	86	42	1	12	42	1.51
37090922--37091240	126	2.5	126	89	2	462	36	16	18	27	1.92
37093031--37093428	51	7.8	51	76	6	371	28	26	15	29	1.96
37093037--37093428	102	3.9	102	93	0	633	29	26	15	29	1.96
37095598--37095666	30	2.3	30	85	5	95	36	2	26	34	1.71
37096106--37096187	41	2.0	41	97	0	155	40	6	4	48	1.49
37096400--37096454	16	3.5	16	80	9	51	21	3	3	70	1.18
37096414--37096463	16	3.2	15	80	8	55	20	4	4	72	1.18
37102211--37102483	146	1.9	145	83	4	363	35	12	5	46	1.66
37107318--37107367	26	2.0	25	84	11	66	64	2	2	32	1.16
37109158--37109196	4	9.8	4	94	0	69	28	0	23	48	1.51
37111855--37111902	18	2.7	18	81	9	62	37	16	4	41	1.68
37113815--37113845	13	2.3	14	94	5	55	67	3	22	6	1.28
37117096--37117176	40	2.0	40	85	2	108	32	24	18	24	1.97
37121832--37121862	14	2.2	14	94	0	53	61	6	0	32	1.21
37122623--37123202	289	2.0	289	93	0	980	26	20	16	36	1.94
37130810--37130838	14	2.1	14	100	0	58	20	48	6	24	1.74
37132134--37132173	20	2.0	20	90	4	64	47	2	5	45	1.38
37133184--37133315	40	3.3	40	74	7	126	26	15	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37139813--37139896	6	13.5	6	77	12	53	16	3	5	73	1.17
37139832--37139893	12	4.9	12	77	15	63	16	3	8	72	1.21
37162753--37162813	3	19.7	3	80	6	68	29	4	1	63	1.24
37165870--37165913	23	1.9	23	85	0	61	18	20	25	36	1.95
37167448--37167502	23	2.3	23	87	6	74	47	16	18	18	1.83
37171479--37171558	10	8.0	10	77	14	76	26	30	16	27	1.97
37171479--37171572	40	2.4	39	85	5	125	24	28	18	28	1.98
37171479--37171555	20	3.8	20	93	3	120	27	29	16	25	1.97
37183310--37183399	38	2.4	37	83	1	108	25	23	16	34	1.95
37194471--37194524	23	2.5	20	74	14	54	66	3	7	22	1.33
37201318--37201365	22	2.1	23	84	3	62	14	0	10	75	1.06
37202468--37202506	19	2.1	19	85	9	53	38	0	7	53	1.30
37217177--37217238	22	2.7	22	90	5	88	48	1	1	48	1.21
37217212--37217265	16	3.4	16	89	0	81	48	3	3	44	1.38
37217322--37217378	28	2.1	27	86	3	78	40	3	7	49	1.47
37217314--37217475	83	2.0	82	86	11	228	38	4	7	48	1.53
37217314--37217427	40	3.0	40	75	17	141	37	5	7	49	1.55
37217378--37217447	16	4.3	16	67	16	54	35	2	10	51	1.50
37217522--37217567	22	2.1	21	84	11	58	56	4	2	36	1.31
37217707--37217741	18	1.9	18	94	0	61	2	42	54	0	1.15
37218645--37218669	9	2.8	9	100	0	50	40	0	12	48	1.40
37220620--37220678	21	2.8	20	75	12	57	62	3	16	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37228150--37228320	45	3.8	45	78	3	166	41	10	18	29	1.84
37239364--37239403	21	2.0	21	85	5	55	37	37	0	25	1.56
37239411--37239471	29	2.1	29	93	6	106	37	32	0	29	1.58
37239695--37239740	22	2.1	22	83	0	56	41	36	0	21	1.54
37239983--37240518	114	4.9	112	85	4	660	25	25	22	26	2.00
37240153--37240518	105	3.4	104	85	4	464	24	25	22	27	2.00
37246226--37246337	25	4.5	25	76	5	102	26	23	24	25	2.00
37246242--37246338	49	2.0	49	87	2	140	27	22	25	23	2.00
37246242--37246352	25	4.5	25	83	7	113	27	23	24	24	2.00
37248277--37248316	21	1.9	21	94	0	71	32	22	15	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211