genome.fa.s21.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  116  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36532984--36533076	45	2.1	45	93	0	159	26	20	15	37	1.92
36533029--36533223	107	1.8	107	82	0	255	23	23	19	33	1.97
36534344--36534377	9	3.8	9	92	0	59	23	38	0	38	1.55
36538206--36538259	17	3.2	16	80	10	56	42	3	18	35	1.68
36538206--36538252	17	2.7	17	86	3	58	42	4	17	36	1.68
36539595--36539643	11	4.4	11	76	5	53	32	0	4	63	1.13
36540052--36540098	24	2.0	24	83	8	60	48	0	34	17	1.47
36542705--36542749	21	2.2	21	88	11	67	15	0	6	77	0.96
36542722--36542753	16	1.9	16	93	6	55	15	0	3	81	0.82
36545616--36545658	14	2.8	16	86	10	54	30	2	4	62	1.28
36551478--36551546	21	3.2	21	79	2	75	26	34	13	26	1.92
36566489--36566570	6	13.7	6	84	0	92	2	23	0	74	0.94
36566489--36566571	9	9.6	9	82	11	93	2	22	0	74	0.93
36566489--36566570	15	5.7	15	84	8	89	2	23	0	74	0.94
36570406--36570530	50	2.5	49	90	5	189	23	24	22	30	1.99
36570406--36570530	25	5.0	25	81	14	150	23	24	22	30	1.99
36571768--36571797	12	2.5	12	94	0	51	23	40	30	6	1.80
36571963--36572020	30	1.9	30	96	0	107	20	37	25	15	1.92
36571962--36572030	30	2.3	30	87	0	102	18	33	30	17	1.94
36572108--36572145	14	2.7	14	95	0	67	36	5	18	39	1.73
36572129--36572174	19	2.3	20	92	3	76	26	8	17	47	1.76
36578476--36578572	49	2.0	48	85	2	131	43	21	13	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36578783--36578836	17	2.9	19	71	20	60	46	16	12	24	1.82
36578768--36578836	36	1.9	36	93	0	120	46	13	13	27	1.79
36583877--36583941	17	3.7	17	75	15	69	47	13	12	26	1.78
36583896--36583949	17	2.9	19	71	20	60	46	16	12	24	1.82
36583879--36583949	36	2.0	36	97	0	133	46	15	12	25	1.81
36600104--36600194	45	2.0	44	81	8	103	42	7	17	31	1.78
36602922--36603106	43	4.4	42	78	8	187	29	30	17	23	1.97
36602922--36603149	85	2.7	85	80	10	227	29	29	17	23	1.97
36603275--36603315	21	2.0	21	100	0	82	63	4	2	29	1.28
36603436--36603470	17	2.1	17	100	0	70	54	5	17	22	1.64
36610057--36610108	19	2.7	19	76	5	61	63	1	1	32	1.16
36611806--36611850	23	2.0	23	86	4	65	37	6	17	37	1.76
36613851--36613891	12	3.3	12	82	3	55	70	4	2	21	1.18
36613856--36613897	12	3.3	13	77	16	52	64	7	4	23	1.38
36615303--36615335	15	2.1	16	88	5	50	30	6	0	63	1.18
36620593--36620726	62	2.2	62	100	0	268	32	16	12	38	1.86
36622726--36622755	15	2.0	15	93	0	51	83	13	3	0	0.77
36622883--36622915	17	2.1	16	88	11	50	15	15	57	12	1.65
36626358--36626393	2	18.0	2	100	0	72	0	0	50	50	1.00
36630558--36630583	5	5.2	5	100	0	52	61	0	0	38	0.96
36631604--36631628	12	2.1	12	100	0	50	0	8	0	92	0.40
36633284--36633315	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36643241--36643309	36	1.9	36	93	0	120	20	20	20	39	1.93
36648394--36648423	13	2.4	13	94	5	53	30	0	6	63	1.20
36650567--36650802	113	2.1	113	93	1	404	41	5	12	41	1.66
36651582--36651609	8	3.5	8	100	0	56	78	0	0	21	0.75
36654116--36654168	26	2.0	26	86	13	74	18	18	35	26	1.95
36654145--36654295	42	3.6	43	81	7	166	21	19	25	34	1.96
36660773--36660824	27	1.9	27	96	0	95	32	30	7	28	1.85
36662025--36662079	20	2.8	20	91	0	83	21	23	1	52	1.56
36662781--36662836	20	2.8	20	73	10	60	37	19	28	14	1.91
36662810--36662922	40	2.8	40	80	5	104	36	16	30	16	1.92
36662860--36662922	20	3.2	20	73	8	65	38	17	30	14	1.89
36662864--36662947	40	2.1	39	86	2	114	39	15	27	17	1.90
36662871--36662934	20	3.2	20	71	8	58	42	15	26	15	1.87
36665116--36665178	28	2.2	28	91	5	101	42	7	19	30	1.79
36666892--36666918	14	1.9	14	100	0	54	25	14	22	37	1.93
36668051--36668100	25	2.0	25	92	0	82	40	16	12	32	1.84
36673459--36673521	31	2.0	31	93	0	108	34	19	6	39	1.77
36677755--36677836	29	3.0	27	87	7	119	20	20	23	35	1.96
36677765--36677836	29	2.6	29	93	4	121	22	19	23	34	1.96
36680691--36680755	27	2.5	26	92	5	87	33	3	12	50	1.55
36680698--36680755	27	2.1	27	100	0	116	32	3	12	51	1.56
36683443--36683523	42	1.9	42	87	0	117	28	25	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36686421--36686455	7	5.0	7	85	0	52	37	0	0	62	0.95
36696236--36696457	111	2.0	111	93	2	385	33	14	13	37	1.86
36698372--36698404	16	2.1	16	88	11	50	57	0	6	36	1.23
36704064--36704101	18	2.2	17	86	13	51	34	0	18	47	1.49
36704596--36705115	257	2.0	257	98	0	995	41	9	18	31	1.82
36710820--36710912	31	3.0	30	77	12	89	39	1	6	52	1.34
36715300--36715417	51	2.3	52	79	4	123	61	2	1	34	1.20
36715351--36715405	21	2.6	21	82	2	65	67	1	1	29	1.11
36717159--36717231	34	2.1	34	84	0	92	24	20	28	26	1.99
36724478--36724605	37	3.5	37	75	2	123	35	8	20	35	1.83
36728333--36728370	18	2.1	19	90	5	60	21	21	5	52	1.66
36742869--36742929	31	2.0	31	93	0	104	32	14	14	37	1.87
36744118--36744205	37	2.4	37	88	1	122	19	18	15	46	1.84
36747937--36747967	8	3.9	8	95	0	53	25	3	6	64	1.33
36752451--36752518	22	3.1	21	81	10	66	23	26	30	19	1.98
36758458--36758523	33	2.0	33	100	0	132	30	12	27	30	1.92
36778285--36778365	26	3.1	26	98	0	153	35	25	20	17	1.95
36778531--36778670	27	5.2	27	82	0	181	21	15	20	43	1.87
36778531--36778662	54	2.4	54	92	0	210	21	15	20	43	1.88
36780297--36780393	50	1.9	51	83	6	126	42	13	14	29	1.84
36781864--36781890	13	2.1	13	100	0	54	29	0	22	48	1.51
36782980--36783138	42	3.7	44	71	16	136	23	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36782975--36783138	43	3.8	42	72	12	145	24	18	28	28	1.98
36786403--36786476	32	2.3	33	79	11	82	39	8	9	43	1.67
36807961--36808011	25	2.0	25	100	0	102	41	11	35	11	1.78
36816357--36816389	11	2.9	12	86	13	52	66	0	0	33	0.92
36817276--36817315	21	1.9	21	84	0	53	15	0	25	60	1.35
36820707--36820767	3	20.3	3	86	0	50	59	6	4	29	1.44
36820714--36820760	18	2.6	18	86	6	60	53	8	6	31	1.57
36820707--36820772	21	3.0	21	72	12	60	57	6	7	28	1.50
36824244--36824347	43	2.4	42	79	16	115	33	27	15	23	1.95
36826076--36826156	41	2.0	41	95	0	144	33	12	9	44	1.75
36828043--36828093	26	2.0	26	88	0	75	60	5	9	23	1.50
36828451--36828568	62	1.9	63	85	5	168	29	0	22	47	1.52
36833307--36833496	43	4.5	43	80	7	194	23	16	26	33	1.96
36835992--36836029	19	2.1	18	90	9	60	60	2	0	36	1.11
36836826--36836869	18	2.5	17	82	10	52	38	2	2	56	1.24
36837238--36837275	19	2.1	18	90	5	58	26	0	7	65	1.19
36838019--36838048	15	1.9	16	93	6	53	50	6	6	36	1.55
36845392--36845833	109	4.1	109	92	1	728	32	17	15	33	1.92
36846120--36846145	6	4.3	6	100	0	52	19	19	0	61	1.35
36846757--36846792	16	2.2	16	95	0	63	22	16	19	41	1.90
36853327--36853650	40	7.7	43	70	11	215	31	22	21	24	1.98
36853327--36853673	126	2.8	126	95	0	624	30	23	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36855949--36856391	109	4.1	109	92	2	739	30	17	17	34	1.93
36855949--36856391	219	2.0	215	92	3	735	30	17	17	34	1.93
36862736--36862781	15	2.9	17	78	12	53	47	0	19	32	1.50
36867631--36867664	17	2.0	17	88	11	52	17	5	41	35	1.74
36876168--36876214	24	2.0	23	84	12	60	44	8	21	25	1.80
36882762--36882821	24	2.5	24	83	0	84	16	38	5	40	1.71
36901473--36901539	25	2.7	25	80	13	84	23	23	19	32	1.97
36901844--36901886	20	2.2	20	100	0	86	51	16	9	23	1.73
36906020--36906066	16	3.0	17	76	20	57	36	2	2	59	1.21
36916350--36916407	28	2.1	28	81	12	66	55	5	0	39	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211