genome.fa.s21.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  19  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6001331--6001386	22	2.5	22	97	2	103	41	0	30	28	1.57
6002464--6002551	27	3.1	28	73	20	76	61	0	0	38	0.96
6004293--6004445	83	1.8	83	83	8	204	33	20	12	33	1.90
6004966--6005010	23	2.0	22	83	12	56	57	4	0	37	1.19
6005011--6005087	10	7.8	10	74	8	59	63	3	2	29	1.25
6005015--6005087	20	3.7	21	74	15	68	65	4	2	27	1.24
6004988--6005087	9	10.3	9	69	20	51	63	4	2	31	1.24
6005496--6005721	90	2.5	89	83	2	274	34	8	18	38	1.81
6007806--6008415	249	2.5	246	86	2	832	32	16	16	34	1.91
6015600--6015637	17	2.2	17	95	0	67	28	28	2	39	1.70
6019938--6019975	17	2.2	17	100	0	76	26	28	5	39	1.78
6022868--6022914	19	2.6	18	90	6	76	61	0	2	36	1.08
6030436--6030474	14	2.7	15	84	8	53	76	0	10	12	1.01
6030435--6030475	22	2.0	20	90	9	64	75	0	9	14	1.04
6031723--6032232	132	3.9	132	88	1	711	28	18	24	28	1.98
6032125--6032322	107	1.9	106	92	1	333	28	19	24	27	1.99
6033242--6033270	5	6.0	5	92	8	51	20	0	0	79	0.74
6035519--6035655	10	14.3	9	69	20	57	62	2	4	30	1.26
6035547--6035655	29	3.7	29	74	15	100	65	1	4	28	1.23
6035584--6035636	10	5.5	10	82	10	58	62	1	1	33	1.17
6035584--6035637	19	2.8	19	84	13	67	62	1	1	33	1.16
6037233--6037264	11	2.8	11	95	4	55	9	0	3	87	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6037999--6038029	3	10.3	3	92	0	53	29	0	3	67	1.06
6037999--6038044	12	3.8	12	82	0	56	28	6	4	60	1.40
6050711--6051385	46	15.7	46	70	16	308	29	19	22	27	1.98
6050801--6051495	169	4.1	170	93	2	1092	29	20	21	28	1.98
6054757--6054793	9	4.1	9	92	0	65	29	10	13	45	1.77
6054847--6054877	9	3.4	9	90	0	53	38	22	12	25	1.90
6057290--6057892	238	2.5	242	85	6	805	33	15	17	34	1.91
6062546--6062862	161	2.0	162	93	1	548	38	11	6	43	1.67
6063509--6063543	18	1.9	18	88	0	52	28	2	11	57	1.48
6064702--6064865	43	3.8	43	85	5	199	25	21	28	25	1.99
6064702--6064865	86	1.9	84	85	6	222	25	21	28	25	1.99
6068822--6068875	23	2.4	22	73	11	56	14	9	18	57	1.64
6070268--6070360	17	5.9	17	72	19	67	38	5	6	49	1.51
6070261--6070317	30	1.9	30	88	0	87	31	8	3	56	1.47
6070309--6070347	16	2.5	16	83	4	53	46	0	7	46	1.31
6070279--6070393	61	1.9	61	85	3	160	41	4	6	47	1.48
6070280--6070421	61	2.3	61	81	4	153	41	4	6	47	1.50
6070649--6070694	7	6.6	7	78	16	51	60	10	0	28	1.30
6070570--6070836	95	2.8	95	90	1	392	45	14	3	35	1.63
6070649--6070694	15	3.3	15	82	11	62	60	10	0	28	1.30
6070732--6070802	27	2.7	27	70	10	65	47	12	2	36	1.56
6070768--6070880	21	5.3	21	70	15	81	45	18	1	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6070844--6071630	9	89.1	9	71	13	507	47	17	2	32	1.61
6071474--6071595	25	4.9	25	77	11	99	42	22	0	33	1.60
6071474--6071634	66	2.4	65	78	12	166	44	21	1	32	1.61
6071555--6071635	16	4.9	16	76	16	85	44	19	1	34	1.59
6071513--6071628	41	2.8	42	82	7	123	44	20	0	33	1.58
6071601--6071637	7	5.0	7	87	12	56	54	16	0	29	1.43
6077571--6077901	42	7.8	42	81	4	315	32	20	20	26	1.97
6077571--6077901	126	2.6	127	82	2	362	32	20	20	26	1.97
6078942--6078988	17	2.8	17	74	9	51	59	0	0	40	0.97
6081191--6081260	10	7.2	10	75	12	56	64	1	1	32	1.11
6081241--6081297	20	2.8	21	72	15	57	61	0	8	29	1.26
6083989--6084601	249	2.5	249	91	1	962	32	15	17	35	1.91
6088707--6088747	19	2.1	20	86	13	59	60	2	2	34	1.23
6088707--6088747	10	4.2	10	81	12	50	60	2	2	34	1.23
6092704--6093312	246	2.5	248	86	2	798	33	14	16	35	1.89
6102168--6102255	43	2.0	44	84	6	117	23	14	17	44	1.86
6102235--6102444	104	2.0	104	96	1	386	31	16	21	30	1.95
6103152--6103186	15	2.4	15	90	4	54	65	17	0	17	1.27
6107395--6107628	50	4.7	50	83	3	258	22	27	22	27	1.99
6112887--6112961	13	5.9	13	68	27	54	42	0	4	53	1.19
6113234--6113265	13	2.5	13	94	0	55	31	0	12	56	1.37
6113412--6113489	36	2.1	37	92	4	131	25	20	32	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6113451--6113637	50	3.7	50	88	2	277	26	24	31	18	1.98
6115629--6115653	12	2.1	12	100	0	50	48	0	12	40	1.40
6116080--6116107	13	2.2	13	100	0	56	21	7	25	46	1.76
6118326--6118357	13	2.5	13	94	0	55	31	0	12	56	1.37
6118452--6118743	50	5.7	50	88	3	397	26	24	30	19	1.98
6122751--6122779	3	9.7	3	100	0	58	68	0	0	31	0.89
6123080--6123141	31	2.0	31	96	0	115	41	17	8	32	1.79
6129202--6129263	31	2.0	31	100	0	124	41	16	9	32	1.80
6129637--6129698	31	2.0	31	100	0	124	32	22	6	38	1.80
6132596--6132700	38	2.7	38	74	12	97	59	2	3	34	1.30
6132719--6132793	19	3.8	19	77	15	64	61	2	9	26	1.40
6133155--6133426	93	3.1	88	82	8	304	37	7	16	38	1.77
6137871--6137910	21	2.0	20	90	5	62	30	5	22	42	1.75
6137869--6137925	20	2.8	20	83	2	69	26	7	29	36	1.83
6143700--6143853	77	2.0	77	93	2	265	29	16	31	22	1.96
6145250--6145279	15	2.0	15	100	0	60	46	20	13	20	1.83
6150282--6150351	34	2.1	34	94	0	122	32	15	18	32	1.93
6152956--6152985	14	2.1	14	93	6	51	53	0	0	46	1.00
6155715--6155758	22	2.0	23	90	4	72	56	2	6	34	1.38
6155720--6155793	24	3.2	23	77	17	64	55	4	2	37	1.33
6157830--6158444	132	4.7	132	87	4	838	26	24	19	29	1.98
6158222--6158424	44	4.6	44	68	14	139	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6157923--6158395	254	1.9	255	92	0	804	26	25	19	28	1.99
6158432--6158870	88	4.9	88	75	7	318	28	24	18	28	1.98
6158515--6158835	45	7.2	45	70	14	245	27	24	17	29	1.98
6161120--6161167	10	4.6	10	84	7	51	2	16	2	79	0.93
6161122--6161154	15	2.2	15	89	10	50	0	18	3	78	0.87
6169600--6169658	30	1.9	31	86	3	84	42	0	38	18	1.51
6169763--6169823	30	2.0	31	87	3	88	37	0	42	19	1.52
6169858--6169894	9	4.1	9	85	0	56	29	8	13	48	1.71
6169948--6169978	9	3.4	9	90	0	53	38	22	12	25	1.90
6173834--6173898	33	2.0	32	82	11	78	61	6	0	32	1.21
6177561--6177607	23	2.1	23	84	11	62	34	17	19	29	1.94
6191297--6191321	7	3.6	7	100	0	50	28	0	0	72	0.86
6197140--6197183	23	1.9	23	85	0	61	29	2	6	61	1.34
6202641--6202670	13	2.3	13	94	0	51	33	3	13	50	1.58
6202765--6202948	50	3.7	50	90	3	280	25	23	31	19	1.98
6213082--6213115	10	3.4	10	100	0	68	26	8	0	64	1.22
6213506--6213593	45	2.0	45	90	0	140	34	20	18	27	1.96
6213604--6213739	50	2.7	52	89	5	224	30	28	16	24	1.97
6219624--6219668	17	2.9	16	83	12	58	53	0	0	46	1.00
6219598--6219669	27	2.8	27	70	15	64	56	1	1	40	1.16
6219866--6219965	50	2.0	48	83	9	121	37	25	11	27	1.89
6220396--6220421	12	2.2	12	100	0	52	38	0	15	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6227228--6227329	41	2.5	41	91	0	168	23	30	18	27	1.98
6227310--6227495	41	4.5	41	89	2	259	31	24	18	25	1.98
6227871--6228152	64	4.3	64	70	14	200	42	14	4	37	1.67
6227974--6228268	67	4.4	67	70	16	234	42	14	3	40	1.62
6227829--6228240	197	2.1	197	94	0	725	41	15	4	38	1.68
6231775--6231826	24	2.2	24	92	0	86	51	7	3	36	1.49
6237229--6237320	41	2.2	41	84	3	114	29	23	19	27	1.98
6237934--6237973	21	1.9	21	94	0	71	47	15	7	30	1.72
6240053--6241300	560	2.2	559	92	1	2081	34	18	17	30	1.94
6257995--6258050	11	5.3	10	76	18	51	26	0	5	67	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211