genome.fa.s21.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  146  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45987744--45987776	16	2.1	16	94	5	59	30	0	0	69	0.88
45991192--45991246	28	2.0	27	82	6	67	3	12	9	74	1.18
45998313--45998349	18	2.2	18	85	9	51	43	10	8	37	1.69
46006430--46006479	3	17.0	3	95	4	93	0	32	0	68	0.90
46009775--46009918	76	1.9	76	85	2	200	31	21	13	32	1.93
46011240--46011625	39	10.2	38	85	1	321	33	16	16	33	1.91
46011431--46011625	75	2.6	74	85	2	248	32	15	14	37	1.88
46016492--46016667	39	4.7	38	76	11	155	29	15	21	33	1.94
46016484--46016667	78	2.4	78	80	7	209	30	14	21	33	1.93
46016480--46016863	37	10.2	37	77	7	226	30	16	18	35	1.93
46016658--46016863	75	2.8	73	83	3	241	30	16	16	35	1.92
46016632--46016851	112	2.0	113	80	4	248	30	16	17	35	1.92
46021212--46021261	14	3.6	14	83	2	66	26	8	26	40	1.83
46021212--46021267	27	2.0	28	86	3	78	25	7	28	39	1.82
46023248--46023297	26	2.0	25	84	4	64	52	0	2	46	1.12
46031385--46031491	36	3.0	36	83	0	133	40	8	21	29	1.83
46036278--46036323	7	6.6	7	89	0	65	19	50	0	30	1.48
46039653--46039702	21	2.4	21	100	0	100	12	14	38	36	1.83
46048534--46048579	23	2.0	24	86	4	67	73	0	4	21	1.00
46048533--46048585	18	3.0	18	82	15	58	75	0	5	18	0.99
46050609--46050663	27	2.0	27	96	0	101	34	7	14	43	1.73
46073655--46073680	13	2.0	13	100	0	52	30	7	23	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46074734--46074789	25	2.2	26	81	15	73	32	19	23	25	1.98
46080243--46080342	41	2.5	41	85	4	132	23	23	15	39	1.92
46081627--46081679	27	2.0	27	92	0	88	30	24	11	33	1.90
46081638--46081695	27	2.1	27	87	0	80	25	25	13	34	1.93
46084103--46084134	16	2.0	16	93	0	55	40	18	9	31	1.83
46084236--46084272	19	1.9	19	88	0	56	16	29	18	35	1.93
46085204--46085292	23	3.9	23	77	11	74	43	35	2	17	1.62
46086690--46086728	13	3.0	12	85	14	51	33	5	0	61	1.18
46091557--46091664	28	3.9	28	73	6	85	16	25	20	37	1.93
46111556--46111580	13	1.9	13	100	0	50	24	8	0	68	1.16
46119552--46119717	27	6.2	25	69	16	84	24	23	15	36	1.93
46122136--46122187	18	2.9	18	91	0	77	44	17	5	32	1.72
46129551--46129575	2	12.5	2	100	0	50	48	0	0	52	1.00
46135409--46135437	6	4.8	6	100	0	58	48	0	17	34	1.47
46139312--46139417	54	2.0	54	90	0	167	33	18	14	33	1.91
46149679--46149719	19	2.2	19	95	0	73	39	4	12	43	1.63
46149758--46149836	41	1.9	41	97	0	149	29	3	16	50	1.62
46159350--46159385	6	6.0	6	93	0	63	66	2	0	30	1.06
46159351--46159385	18	1.9	18	100	0	70	68	2	0	28	1.04
46165470--46165513	18	2.6	16	80	16	52	47	0	2	50	1.13
46166282--46166516	122	1.9	121	88	0	353	35	17	8	38	1.81
46170455--46170515	30	2.0	31	90	3	97	19	44	0	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46170620--46170679	30	2.0	31	86	3	86	20	40	0	40	1.52
46173570--46173626	15	3.6	15	72	11	51	50	1	3	43	1.29
46177160--46177382	101	2.2	101	81	7	265	24	15	29	30	1.95
46177199--46177378	51	3.6	50	81	6	186	23	16	28	31	1.96
46177300--46177380	26	3.2	26	65	28	73	22	14	29	33	1.94
46177198--46177386	102	1.9	101	88	3	290	23	16	29	30	1.96
46185740--46185860	45	2.7	45	84	0	134	43	14	19	22	1.87
46190419--46190460	19	2.2	19	95	0	75	14	2	2	80	0.90
46191911--46192056	74	2.0	73	91	1	238	29	20	15	34	1.93
46194678--46194722	23	2.0	23	86	0	63	40	17	17	24	1.91
46198033--46198532	90	5.6	88	78	8	352	25	6	14	53	1.65
46198162--46198489	90	3.6	90	87	2	453	25	7	15	52	1.69
46201165--46201265	6	17.8	6	90	5	106	26	18	0	54	1.44
46201254--46201311	20	2.9	21	84	7	84	24	10	0	65	1.23
46201282--46201320	16	2.5	15	84	12	51	25	10	0	64	1.25
46201364--46201412	23	2.1	23	81	7	55	28	12	0	59	1.34
46201755--46201836	12	6.9	11	76	14	74	24	19	1	54	1.51
46201754--46201837	18	4.7	17	73	22	66	23	19	1	55	1.49
46201832--46201887	21	2.6	21	82	2	58	23	10	1	64	1.35
46201952--46202029	11	7.8	11	67	25	57	26	14	1	57	1.45
46201984--46202022	18	2.2	18	85	0	51	28	12	0	58	1.34
46201927--46202029	29	3.6	29	88	3	147	27	13	0	58	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46202427--46202490	22	3.0	21	65	6	56	35	1	10	51	1.47
46206017--46206196	45	4.0	45	86	4	231	22	15	27	35	1.94
46218761--46218804	22	2.0	22	82	8	54	43	2	0	54	1.12
46225103--46225304	43	4.7	43	86	2	271	29	32	17	20	1.96
46225679--46225744	19	3.3	19	69	19	62	59	19	3	18	1.51
46225663--46225744	41	2.0	41	97	0	155	57	19	6	17	1.60
46229366--46229392	13	2.1	13	100	0	54	29	7	7	55	1.55
46229876--46229920	7	6.4	7	92	0	63	31	46	0	22	1.52
46229959--46230016	7	8.4	7	81	11	57	37	41	1	18	1.61
46229962--46230016	27	2.0	27	82	6	67	38	41	1	18	1.61
46230153--46230183	7	4.4	7	100	0	62	32	38	0	29	1.57
46230241--46230277	14	2.6	14	91	0	65	45	29	0	24	1.53
46231120--46231216	33	2.8	33	84	7	106	37	22	10	29	1.87
46231430--46231585	41	3.8	41	89	6	235	28	22	20	28	1.98
46232066--46232113	24	2.1	23	85	11	64	31	14	0	54	1.41
46238759--46238855	33	2.8	33	84	7	106	37	22	10	29	1.87
46239069--46239224	41	3.8	41	89	6	235	28	22	20	28	1.98
46239705--46239752	24	2.1	23	85	11	64	31	14	0	54	1.41
46241126--46241490	41	8.9	41	91	0	579	29	27	23	19	1.98
46241527--46241660	40	3.4	38	81	8	153	21	21	20	35	1.96
46241552--46241678	40	3.2	40	78	10	129	21	23	21	33	1.97
46242159--46242230	35	2.1	35	84	2	92	62	5	12	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46255628--46255675	24	2.0	24	88	8	71	33	2	8	56	1.41
46257605--46257650	24	1.9	24	82	8	58	36	2	10	50	1.50
46277523--46277570	20	2.3	21	86	10	64	41	4	20	33	1.72
46280812--46280986	28	6.3	28	89	0	244	29	22	23	24	1.99
46281311--46281849	27	20.0	27	84	4	567	20	17	20	41	1.90
46286199--46286238	18	2.1	20	86	9	57	45	2	0	52	1.14
46291111--46291182	38	1.9	38	91	2	119	73	6	12	6	1.23
46292089--46292135	7	6.6	7	83	11	60	72	0	12	14	1.13
46292102--46292135	8	4.4	8	92	3	52	73	0	14	11	1.10
46292088--46292135	15	3.3	15	85	8	64	72	0	12	14	1.11
46293293--46294258	88	11.0	88	89	1	1389	25	23	26	24	2.00
46295109--46295158	19	2.6	19	90	0	73	20	54	14	12	1.71
46296503--46296542	18	2.1	20	90	9	66	47	0	0	52	1.00
46303967--46303998	16	1.9	17	93	6	57	56	9	0	34	1.32
46306252--46306282	7	4.4	7	91	0	53	45	38	0	16	1.47
46306270--46306430	80	2.0	80	97	0	304	30	18	13	38	1.88
46322132--46322173	22	1.9	22	85	9	59	73	2	19	4	1.12
46323400--46324137	45	16.4	45	86	3	938	27	15	26	31	1.96
46324176--46324330	44	3.5	43	71	13	127	25	20	25	29	1.99
46324172--46324340	89	1.9	89	88	2	259	27	20	24	27	1.99
46325925--46325976	22	2.5	22	81	6	63	36	3	0	59	1.16
46326106--46326191	39	2.2	39	81	6	102	33	4	4	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46333128--46333204	24	3.2	24	84	0	100	22	28	14	35	1.93
46333196--46333291	25	3.8	25	78	0	102	28	27	14	30	1.95
46337424--46337458	18	2.0	18	88	5	54	14	5	5	74	1.19
46339752--46339804	17	3.3	16	77	12	56	30	1	1	66	1.13
46344772--46344802	12	2.6	12	100	0	62	0	22	6	70	1.09
46348060--46348096	18	2.1	18	100	0	74	32	10	0	56	1.34
46357490--46357625	64	2.1	64	88	0	200	41	13	2	42	1.59
46359656--46360257	304	2.0	304	90	1	947	42	17	9	30	1.81
46367952--46368157	9	21.0	9	66	18	76	62	3	1	32	1.22
46367970--46368158	21	9.4	20	74	18	121	62	4	1	31	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211