genome.fa.s21.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  200  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61812184--61812237	19	2.8	19	78	13	65	64	0	0	35	0.94
61812201--61812252	16	3.1	16	81	10	68	63	0	1	34	1.06
61812195--61812251	18	3.2	18	85	7	73	63	0	1	35	1.05
61812195--61812251	17	3.2	18	78	9	64	63	0	1	35	1.05
61812633--61812662	15	2.0	15	100	0	60	26	13	33	26	1.93
61813751--61813891	44	3.3	43	80	9	144	29	7	13	48	1.70
61815781--61815818	20	1.9	19	94	5	67	36	5	10	47	1.61
61820474--61820519	23	2.0	23	100	0	92	17	17	34	30	1.93
61820437--61820557	64	1.9	64	94	0	215	27	19	28	25	1.98
61820497--61820587	40	2.2	40	84	1	119	27	20	28	23	1.99
61827569--61827637	29	2.3	30	80	9	79	50	10	1	37	1.45
61828458--61828489	9	3.6	9	91	0	55	31	0	0	68	0.90
61828576--61828662	9	9.1	9	71	10	57	29	1	3	65	1.16
61830055--61830079	12	2.1	12	100	0	50	48	0	20	32	1.50
61835129--61835167	16	2.5	16	87	4	53	43	0	2	53	1.14
61834998--61835056	26	2.3	26	82	2	75	42	0	1	55	1.09
61835034--61835260	111	2.1	110	95	0	409	42	2	4	50	1.35
61835294--61835346	18	3.0	17	88	5	61	37	1	1	58	1.20
61835507--61835604	46	2.2	45	80	9	110	37	28	7	26	1.83
61837432--61837550	41	3.0	39	76	9	134	27	17	22	31	1.97
61837432--61837550	37	3.0	40	76	9	136	27	17	22	31	1.97
61853315--61853354	14	3.1	14	82	17	59	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61853315--61853355	13	3.2	13	80	19	59	56	0	0	43	0.99
61853808--61853885	21	3.8	22	70	19	69	34	1	5	58	1.28
61856388--61856412	3	8.3	3	100	0	50	68	0	0	32	0.90
61879107--61879174	20	3.5	19	76	13	57	55	2	1	39	1.24
61887654--61887679	7	3.7	7	100	0	52	73	0	0	26	0.84
61889379--61889424	18	2.5	18	78	21	51	0	41	2	56	1.11
61909115--61909152	19	2.0	19	90	10	60	5	21	0	73	1.02
61913716--61913753	19	2.0	19	90	10	60	5	21	0	73	1.02
61917056--61917089	3	11.3	3	100	0	68	32	0	0	67	0.91
61922604--61922642	5	7.2	5	83	16	51	5	0	53	41	1.23
61923391--61923415	10	2.5	10	100	0	50	36	0	0	64	0.94
61923350--61923526	88	2.0	88	97	0	336	42	3	10	43	1.55
61929397--61929433	19	1.9	19	94	0	65	51	0	8	40	1.32
61936112--61936174	30	2.1	30	90	0	99	25	3	14	57	1.52
61936557--61936616	29	2.1	29	93	6	106	41	0	6	51	1.28
61945894--61945927	13	2.7	12	90	9	50	55	5	0	38	1.24
61945986--61946018	15	2.2	15	94	0	57	33	0	3	63	1.10
61948786--61948816	6	5.2	6	100	0	62	51	0	0	48	1.00
61953928--61953971	19	2.4	18	79	20	56	72	0	2	25	0.96
61953915--61953971	17	3.3	17	77	18	55	71	0	1	26	0.95
61954546--61954602	18	3.0	18	72	10	51	26	0	5	68	1.11
61954592--61954668	16	4.7	15	73	17	57	40	1	1	57	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61954588--61954635	20	2.4	20	82	6	62	37	2	0	60	1.09
61954594--61954648	18	3.1	19	70	17	55	41	1	0	56	1.10
61954611--61954681	27	2.5	28	82	15	83	40	1	1	56	1.17
61954611--61954653	15	2.8	16	82	7	61	41	2	0	55	1.12
61962991--61963029	19	2.0	19	85	5	51	56	0	0	43	0.99
61969354--61969387	16	2.1	16	88	0	50	50	14	17	17	1.79
61972188--61972228	21	2.0	21	90	0	64	29	21	29	19	1.98
61974129--61974162	16	2.1	16	88	0	50	50	14	17	17	1.79
61982450--61982481	7	4.6	7	96	0	55	53	3	12	31	1.54
61982564--61982623	22	2.7	24	80	10	65	41	6	18	33	1.76
61983050--61983084	17	2.0	18	88	5	54	74	5	14	5	1.19
61988308--61988336	15	1.9	15	100	0	58	13	17	13	55	1.70
61990572--61990636	29	2.2	29	89	10	98	40	4	9	46	1.57
61990580--61990644	29	2.2	31	88	5	98	38	7	12	41	1.71
61993097--61993130	16	2.1	17	88	5	52	41	2	8	47	1.50
61998154--61998214	20	3.1	19	77	13	70	36	11	11	40	1.77
62001403--62001445	22	2.0	22	95	4	79	48	13	9	27	1.73
62007150--62007189	18	2.3	18	86	4	55	65	12	2	20	1.38
62010151--62010227	22	3.6	21	85	5	91	33	25	1	38	1.65
62010200--62010257	30	1.9	30	89	0	89	32	32	0	34	1.58
62010229--62010270	22	1.9	22	90	0	66	33	33	0	33	1.58
62010469--62010503	15	2.4	15	90	4	54	22	2	5	68	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62012608--62012646	18	2.0	20	85	9	55	43	20	0	35	1.52
62012620--62012663	23	1.9	23	90	0	70	47	18	2	31	1.61
62012632--62013360	29	24.9	29	84	6	893	44	24	0	30	1.60
62012668--62012837	28	6.4	23	69	26	106	44	24	3	27	1.70
62012632--62013360	59	12.4	58	87	6	915	44	24	0	30	1.60
62013068--62013349	30	10.0	24	74	22	107	44	25	0	30	1.54
62016603--62016971	127	2.9	126	90	2	557	33	23	14	28	1.94
62020118--62020162	22	2.0	22	86	0	63	62	0	0	37	0.96
62020722--62020781	29	2.1	29	96	0	111	36	25	10	28	1.88
62032462--62032499	20	1.9	20	88	0	58	55	0	13	31	1.38
62032456--62032620	54	3.2	52	73	17	180	51	3	9	35	1.51
62032454--62032666	102	2.1	102	91	3	340	53	3	7	35	1.48
62032558--62032606	20	2.5	20	86	0	71	55	0	8	36	1.30
62032614--62032683	16	4.5	15	72	22	56	58	2	5	32	1.36
62032609--62032710	46	2.2	46	98	0	195	56	4	4	33	1.42
62042092--62042139	25	2.0	25	83	4	62	18	27	16	37	1.92
62042203--62042328	49	2.6	49	75	9	134	15	26	21	35	1.94
62042253--62042335	24	3.4	24	77	9	69	16	26	21	34	1.95
62052847--62052885	21	1.9	20	84	5	51	43	2	2	51	1.29
62057216--62057280	30	2.1	31	85	2	87	44	18	4	32	1.70
62057490--62057543	19	2.8	19	94	0	90	42	11	12	33	1.79
62058404--62058518	23	4.9	24	74	14	96	32	6	4	56	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62058400--62058560	70	2.3	69	78	10	175	32	5	4	57	1.42
62058405--62058552	24	6.4	23	75	12	115	33	6	3	57	1.40
62058692--62058736	23	2.0	23	90	0	72	31	6	4	57	1.44
62061081--62061129	21	2.3	21	92	3	80	57	0	6	36	1.24
62066880--62066904	7	3.6	7	100	0	50	60	0	0	40	0.97
62069215--62069278	31	2.1	31	90	0	101	32	10	10	45	1.74
62069773--62069826	27	2.0	27	85	3	72	35	14	0	50	1.44
62105829--62105876	22	2.1	24	84	7	64	35	0	4	60	1.16
62105862--62105902	21	1.9	22	90	5	66	46	0	7	46	1.30
62111881--62111913	17	2.0	17	88	5	50	75	9	3	12	1.14
62116389--62116447	20	3.0	20	76	16	68	35	0	1	62	1.05
62116330--62116453	9	13.7	9	70	18	55	28	1	2	67	1.12
62116340--62116446	10	10.5	10	68	23	55	28	1	1	67	1.12
62116391--62116454	19	3.3	19	73	18	60	31	0	3	65	1.08
62123292--62123430	46	3.0	46	89	0	206	35	9	25	30	1.87
62125872--62126016	42	3.5	42	78	5	132	16	19	19	44	1.86
62128667--62128692	7	3.7	7	100	0	52	69	0	0	30	0.89
62129854--62129903	17	2.7	20	78	18	70	10	0	44	46	1.37
62134483--62134532	17	2.7	20	78	18	70	10	0	44	46	1.37
62135144--62135198	20	2.8	20	77	5	58	30	0	7	61	1.23
62136273--62136324	26	2.0	26	88	7	79	53	7	0	38	1.30
62136273--62136336	26	2.4	26	80	10	76	53	6	0	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62147044--62147078	17	2.1	17	94	0	61	51	8	17	22	1.72
62153929--62153959	16	1.9	16	93	0	53	25	6	0	67	1.14
62155488--62155525	19	2.0	20	94	5	69	23	2	5	68	1.23
62162405--62162449	18	2.5	18	96	0	81	37	13	15	33	1.86
62183561--62183609	21	2.4	21	90	10	75	38	8	32	20	1.82
62189287--62189329	8	4.8	9	91	8	54	32	0	16	51	1.45
62189287--62189332	14	3.3	14	84	0	56	32	0	17	50	1.47
62189295--62189331	8	4.4	8	93	6	56	35	0	13	51	1.41
62189661--62189793	41	3.2	41	88	2	178	26	18	24	30	1.97
62191486--62191673	21	9.0	21	66	2	99	44	16	22	17	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211