genome.fa.s21.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  114  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35863060--35863306	59	4.2	59	79	4	243	27	15	20	36	1.93
35866999--35867193	28	7.0	28	78	9	209	24	16	22	36	1.94
35866999--35867193	55	3.5	57	86	3	270	24	16	22	36	1.94
35867198--35867393	61	3.2	61	83	2	259	33	13	24	28	1.93
35887990--35888033	18	2.4	18	96	0	79	50	11	2	36	1.51
35887994--35888038	18	2.3	20	81	18	67	53	8	2	35	1.45
35888366--35888402	18	2.1	18	94	0	65	27	5	13	54	1.61
35888607--35888645	15	2.6	15	87	0	51	48	0	28	23	1.51
35889246--35889338	31	3.0	31	100	0	186	41	16	9	32	1.80
35891551--35891594	22	2.0	22	100	0	88	31	18	18	31	1.95
35894202--35894227	12	2.2	12	100	0	52	69	7	0	23	1.14
35901551--35901621	31	2.3	31	83	9	83	42	2	11	43	1.55
35902586--35902624	21	1.9	19	85	10	51	61	0	0	38	0.96
35905956--35906068	55	2.0	56	93	1	192	47	13	8	30	1.73
35911327--35911351	13	1.9	13	100	0	50	48	0	12	40	1.40
35919824--35919849	7	3.7	7	100	0	52	42	11	30	15	1.82
35919774--35919898	57	2.2	58	94	1	216	32	13	24	28	1.94
35919730--35919941	101	2.0	104	87	8	306	32	14	23	29	1.94
35919838--35919941	44	2.4	44	93	1	174	31	14	23	30	1.94
35920007--35920039	9	3.7	9	91	0	57	33	12	21	33	1.90
35920172--35920227	29	1.9	29	92	0	94	19	44	0	35	1.51
35921169--35921194	7	3.7	7	100	0	52	42	11	30	15	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35921921--35921979	29	2.0	29	86	0	82	20	11	33	33	1.89
35922648--35922729	42	2.0	42	100	0	164	41	14	9	34	1.79
35929367--35929414	25	1.9	25	86	0	69	22	27	2	47	1.62
35929639--35929811	61	2.8	61	83	2	204	27	26	12	33	1.93
35934643--35934677	13	2.7	13	90	0	61	45	0	8	45	1.34
35935311--35935391	25	3.2	25	77	5	92	27	20	20	30	1.98
35935323--35935400	25	3.1	25	72	7	77	30	20	17	30	1.96
35938025--35938181	82	1.9	82	82	2	199	29	21	17	32	1.96
35938115--35938228	54	2.1	54	85	0	147	29	18	15	35	1.92
35938186--35938325	28	4.9	28	70	10	104	28	15	21	34	1.94
35938186--35938369	56	3.3	55	77	9	165	28	18	20	33	1.96
35938319--35938377	28	2.1	28	83	0	73	27	22	18	32	1.97
35938397--35938486	30	3.1	30	76	10	87	27	14	18	38	1.90
35946848--35946931	42	2.0	42	83	4	107	51	5	5	36	1.51
35947047--35947074	6	4.7	6	100	0	56	17	0	0	82	0.68
35948177--35948219	20	2.2	19	84	12	52	32	6	13	46	1.71
35950823--35950949	62	2.0	62	93	0	218	38	12	15	33	1.85
35951288--35951312	13	1.9	13	100	0	50	44	8	0	48	1.32
35953837--35953897	28	2.1	29	90	3	97	24	18	24	32	1.97
35953665--35953897	26	8.4	28	72	12	142	24	18	21	35	1.95
35957653--35957795	24	5.8	25	72	8	80	16	23	21	38	1.93
35961228--35961257	16	1.9	15	93	6	51	46	3	0	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35964688--35964737	23	2.2	23	82	7	57	24	20	30	26	1.98
35966667--35966719	25	2.1	25	100	0	106	30	0	11	58	1.33
35967999--35968116	50	2.3	52	82	5	134	33	15	12	38	1.85
35972420--35972463	21	2.0	22	86	4	63	47	4	2	45	1.35
35977024--35977059	18	2.0	18	88	0	54	52	0	8	38	1.32
35977934--35978033	49	2.1	47	83	7	123	30	16	8	46	1.75
35980648--35980819	42	4.1	42	85	3	170	44	16	22	16	1.87
35980633--35980770	21	6.7	21	66	8	77	42	20	23	13	1.87
35981534--35981583	17	2.8	18	72	6	57	46	6	2	46	1.39
35985978--35986042	14	4.6	14	74	16	55	60	3	6	30	1.37
35988211--35988260	23	2.2	23	89	3	75	28	6	24	42	1.78
35989176--35989232	22	2.7	23	76	20	61	31	0	15	52	1.43
35989517--35989586	26	2.7	25	89	6	97	18	24	21	35	1.95
35989515--35989656	25	5.6	25	74	13	96	18	24	23	33	1.96
35993851--35993879	12	2.4	12	100	0	58	24	51	24	0	1.48
35994286--35994311	13	2.0	13	100	0	52	23	0	0	76	0.78
36006223--36006523	44	6.8	44	72	10	175	30	19	22	26	1.98
36006223--36006398	93	1.9	93	82	6	223	30	19	23	27	1.98
36019965--36020012	25	1.9	25	83	8	62	58	0	10	31	1.32
36023807--36023857	26	2.0	26	100	0	102	21	11	15	50	1.76
36027846--36027911	30	2.2	29	82	15	82	56	0	0	43	0.99
36027856--36027984	10	12.4	10	66	17	50	55	1	2	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36027937--36027986	20	2.5	20	93	3	84	60	2	4	34	1.27
36028320--36028380	19	3.2	19	73	19	54	18	3	3	75	1.08
36028352--36028417	18	3.6	18	83	6	71	28	1	0	69	0.97
36028338--36028420	9	9.1	9	75	19	57	28	1	2	67	1.11
36028525--36028573	21	2.3	21	86	10	64	38	2	2	57	1.22
36031150--36031486	46	7.6	46	88	7	491	33	15	21	29	1.94
36032677--36032717	21	1.9	22	95	5	75	24	14	26	34	1.94
36032683--36032730	21	2.2	21	85	3	60	22	16	25	35	1.95
36034212--36034275	28	2.3	28	83	0	83	31	15	21	31	1.95
36042204--36042238	18	1.9	18	100	0	70	74	0	5	20	1.02
36045860--36045896	17	2.2	17	100	0	74	35	18	10	35	1.86
36046981--36047009	14	2.0	15	93	6	51	27	24	13	34	1.93
36052179--36052267	44	2.0	44	93	0	151	41	11	22	24	1.86
36052295--36052526	50	4.8	49	84	5	287	28	22	30	18	1.97
36052294--36052521	97	2.4	96	83	5	282	28	21	30	18	1.97
36052297--36052568	50	5.7	47	78	11	230	28	22	29	19	1.98
36054485--36054557	37	1.9	38	86	8	105	31	21	1	45	1.61
36061677--36061749	37	2.0	36	83	2	92	31	23	0	45	1.53
36062083--36062126	23	1.9	24	90	9	74	22	22	0	54	1.45
36062456--36062487	16	2.0	16	93	0	55	0	34	0	65	0.93
36063654--36063726	37	1.9	38	86	8	105	31	21	1	45	1.61
36064043--36064086	22	1.9	24	86	9	65	25	22	0	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36064542--36064599	29	2.1	27	84	12	75	34	8	1	55	1.41
36064978--36065003	13	2.0	13	100	0	52	30	0	30	38	1.58
36066681--36066759	41	1.9	41	84	0	104	24	18	26	30	1.98
36066776--36066852	13	5.9	13	81	0	91	27	7	27	37	1.84
36067469--36067508	21	1.9	21	85	10	55	22	35	10	32	1.87
36068899--36069072	71	2.4	72	81	7	201	54	14	6	25	1.64
36068932--36069065	71	1.9	72	88	1	207	55	14	5	23	1.62
36069493--36069558	18	3.7	18	89	0	96	37	13	13	34	1.84
36070873--36071059	44	4.2	44	95	2	315	11	27	3	57	1.48
36070913--36071027	21	5.3	21	60	15	54	10	26	4	58	1.50
36070913--36071032	24	5.3	24	65	15	94	10	26	4	59	1.48
36072366--36072404	19	2.1	19	90	0	60	51	20	25	2	1.60
36072408--36072444	19	1.9	19	94	0	65	45	16	27	10	1.80
36072481--36072522	19	2.2	19	100	0	84	45	19	30	4	1.71
36072702--36072763	30	2.1	30	100	0	124	29	12	22	35	1.91
36073828--36073859	2	16.5	2	93	6	57	50	0	0	50	1.00
36076188--36076340	51	3.0	51	85	0	216	41	8	24	26	1.83
36076188--36076370	51	3.6	50	82	2	204	42	8	24	24	1.83
36084111--36084186	29	2.5	30	79	10	84	30	5	13	51	1.62
36084108--36084186	31	2.6	31	78	9	92	30	5	12	51	1.61
36093565--36093630	18	3.7	18	78	7	64	54	0	0	45	0.99
36093822--36093933	49	2.2	51	82	7	140	58	8	2	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36093822--36093964	49	2.8	49	76	14	130	58	7	2	30	1.40
36094766--36094828	23	2.8	23	76	11	58	46	4	4	44	1.45
36096951--36097134	42	4.4	42	90	2	282	29	20	22	27	1.98
36101547--36101657	44	2.5	44	82	2	134	29	19	20	29	1.97
36101641--36101740	44	2.3	44	81	6	123	34	22	18	26	1.96
36101778--36102584	88	9.2	88	83	3	865	21	23	26	28	1.99
36101749--36102016	88	3.1	86	73	10	247	23	24	23	28	2.00
36101778--36102584	263	3.1	259	81	7	919	21	23	26	28	1.99
36102295--36102438	44	3.3	43	67	12	112	23	24	27	24	2.00
36102344--36102570	44	5.2	44	67	6	145	18	24	30	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211