genome.fa.s21.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  168  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52331785--52331845	27	2.3	26	86	8	88	55	0	8	36	1.30
52331790--52331843	27	2.0	27	96	0	99	57	0	5	37	1.22
52331918--52331963	9	5.0	9	89	2	65	32	13	13	41	1.82
52359984--52360063	31	2.6	31	90	2	117	20	10	21	48	1.78
52368402--52368468	34	1.9	35	87	3	100	35	7	10	46	1.66
52368543--52368619	20	3.8	20	73	13	86	36	3	1	58	1.25
52368635--52368670	18	2.0	18	88	0	54	61	8	0	30	1.26
52370801--52370836	13	2.8	13	100	0	72	30	13	47	8	1.73
52370802--52370868	26	2.6	25	79	13	73	29	10	49	10	1.70
52370881--52370926	21	2.1	22	96	4	85	47	4	28	19	1.68
52373425--52373474	3	16.3	3	87	4	73	34	4	0	62	1.14
52375829--52375853	6	4.2	6	100	0	50	20	0	0	80	0.72
52378266--52378307	2	21.0	2	95	0	75	2	50	0	47	1.14
52378843--52379454	305	2.0	305	95	0	1109	29	16	19	34	1.94
52384441--52384467	13	2.1	13	100	0	54	55	7	0	37	1.28
52386000--52386044	23	2.0	23	82	8	56	44	6	2	46	1.42
52389190--52389398	92	2.3	90	85	9	271	46	3	3	46	1.37
52389326--52389373	26	1.9	25	84	16	64	45	0	2	52	1.12
52389452--52389659	66	3.4	64	66	25	176	40	3	6	48	1.48
52389421--52389703	117	2.4	119	91	7	459	42	3	5	49	1.41
52389665--52389706	15	2.7	16	82	14	52	45	0	2	52	1.13
52389656--52389697	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52389640--52389955	156	2.0	157	96	0	589	47	5	3	44	1.41
52389808--52389842	18	2.0	17	88	5	52	45	0	0	54	0.99
52393396--52393706	140	2.2	140	83	3	385	34	19	10	35	1.87
52396362--52396398	19	1.9	20	88	5	58	64	2	0	32	1.07
52401052--52401119	24	2.8	24	71	10	57	17	29	17	35	1.93
52401181--52401239	25	2.4	25	82	5	75	18	22	23	35	1.96
52401192--52401247	25	2.2	25	81	6	69	21	21	23	33	1.97
52403262--52404128	89	9.7	89	83	3	854	28	23	23	24	1.99
52403262--52403935	45	15.1	44	66	14	283	29	23	24	22	1.99
52404781--52404823	22	1.9	23	85	4	61	62	16	18	2	1.43
52405667--52405721	9	5.8	9	79	12	56	34	9	1	54	1.43
52405662--52405755	6	15.7	6	77	0	71	28	6	2	62	1.31
52405662--52405738	30	2.6	30	85	4	93	31	7	2	58	1.40
52405696--52405750	21	2.6	21	85	0	65	29	3	1	65	1.20
52412682--52415485	45	62.6	45	66	15	815	29	23	22	24	1.99
52412687--52414498	89	20.3	89	79	5	1389	29	23	22	24	1.99
52412824--52414933	178	11.8	177	75	8	1429	30	23	21	24	1.99
52412682--52415073	223	10.7	223	69	12	637	29	23	21	24	1.99
52412894--52414301	267	5.3	267	81	4	1545	29	23	22	24	1.99
52414091--52415017	460	2.0	460	97	0	1755	30	24	21	23	1.99
52414551--52414724	89	2.0	89	84	0	231	31	24	20	24	1.98
52414723--52415705	89	11.0	88	82	4	912	27	24	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52414720--52415710	356	2.8	356	80	5	1139	27	24	23	23	2.00
52417246--52417303	3	19.0	3	85	3	80	32	5	0	62	1.18
52417251--52417330	9	8.8	9	81	2	79	32	8	0	58	1.29
52421692--52421726	17	2.1	16	89	5	52	51	0	0	48	1.00
52429501--52429541	21	2.0	21	81	18	50	31	19	26	21	1.97
52432630--52433370	81	9.1	81	90	0	1104	41	17	30	10	1.84
52433147--52433215	36	1.9	36	87	0	102	46	14	24	14	1.82
52433233--52433401	36	4.5	36	75	15	146	39	19	28	12	1.88
52433299--52433401	34	3.0	34	76	10	118	36	22	29	11	1.89
52435024--52435090	35	1.9	35	100	0	134	26	11	8	52	1.68
52435493--52435531	18	2.2	18	90	9	62	17	2	0	79	0.84
52435971--52436020	13	3.8	13	94	0	82	22	44	24	10	1.83
52442876--52442917	16	2.6	16	100	0	84	21	11	21	45	1.84
52453106--52453176	29	2.4	29	85	0	97	22	23	33	19	1.97
52459255--52459281	7	3.9	7	100	0	54	14	0	0	85	0.61
52460947--52461049	41	2.5	40	87	4	145	51	4	22	21	1.66
52461015--52461065	24	2.1	24	88	0	75	52	7	25	13	1.67
52468015--52468328	46	6.6	46	83	11	395	32	14	22	29	1.94
52468127--52468154	13	2.2	13	100	0	56	25	7	28	39	1.82
52468081--52468200	59	2.0	59	98	0	231	31	13	22	32	1.92
52468034--52468328	105	3.0	100	84	13	432	32	14	22	29	1.94
52469468--52469522	19	2.7	21	91	5	87	38	10	12	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52469749--52469793	23	2.0	23	81	0	54	26	0	11	62	1.29
52477225--52477258	17	2.0	17	100	0	68	23	5	23	47	1.73
52485349--52485381	10	3.0	11	86	13	50	18	36	0	45	1.49
52485366--52485443	22	3.5	22	89	1	120	29	28	0	42	1.56
52487831--52488221	29	13.5	29	86	6	526	46	31	0	21	1.54
52488229--52488328	19	5.4	19	68	17	84	40	14	1	45	1.51
52488229--52488338	37	3.0	37	98	0	211	40	12	0	46	1.48
52491269--52491644	124	3.0	124	92	2	603	34	22	14	27	1.94
52503563--52503636	21	3.5	21	80	7	87	21	35	12	31	1.90
52508799--52508858	32	2.0	31	81	18	74	48	0	0	51	1.00
52520333--52520434	41	2.5	41	90	3	152	26	18	25	29	1.98
52523775--52523816	3	14.3	3	95	5	77	0	30	0	69	0.89
52532752--52532791	20	2.0	20	100	0	80	60	15	10	15	1.60
52537724--52537753	5	5.8	5	96	4	51	80	3	0	16	0.85
52539275--52539431	43	3.7	42	78	8	176	23	17	28	30	1.97
52539276--52539431	84	1.9	84	84	8	210	23	17	28	30	1.97
52545478--52545544	17	4.1	17	73	21	54	73	2	0	23	0.97
52546045--52546076	2	16.0	2	100	0	64	50	0	0	50	1.00
52553534--52553611	38	2.1	38	87	0	111	38	2	11	47	1.54
52555540--52555574	16	2.3	16	90	9	56	22	2	0	74	0.95
52560730--52560773	21	2.1	21	87	4	63	56	2	11	29	1.46
52565033--52565164	31	4.2	31	81	4	140	48	14	7	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52565024--52565153	62	2.1	62	85	2	172	46	13	7	32	1.72
52566417--52566452	17	2.0	19	89	10	58	58	19	0	22	1.40
52566468--52566506	20	2.0	20	90	10	62	51	33	5	10	1.58
52567104--52567131	9	3.1	9	100	0	56	21	0	0	78	0.75
52568854--52569082	106	2.2	106	79	6	241	31	19	25	23	1.98
52577237--52577490	126	2.0	124	94	2	447	42	7	22	27	1.80
52586967--52587033	20	3.3	20	71	22	59	68	2	0	28	1.04
52586995--52587049	12	4.4	12	74	17	58	69	0	0	30	0.89
52587632--52587710	13	5.8	14	70	16	51	59	1	0	39	1.06
52587635--52587697	27	2.3	28	76	13	69	57	1	0	41	1.08
52587632--52587688	15	4.1	15	76	19	52	56	1	0	42	1.10
52588190--52588287	34	2.9	33	83	10	128	41	0	16	41	1.48
52592588--52592613	7	3.7	7	100	0	52	57	15	0	26	1.38
52595901--52595995	44	2.2	44	94	0	163	33	7	14	44	1.73
52600958--52601058	53	1.9	53	95	0	184	26	15	26	30	1.96
52614661--52614739	40	2.0	40	94	0	140	26	31	21	20	1.98
52614909--52614966	21	2.9	21	73	19	61	36	6	12	44	1.68
52616529--52616565	11	3.7	10	86	13	58	40	0	0	59	0.97
52616529--52616572	23	2.0	21	82	8	52	40	0	0	59	0.98
52616529--52616578	19	2.5	20	83	6	57	40	0	0	60	0.97
52620522--52620582	32	1.9	32	83	12	81	49	1	4	44	1.33
52620541--52620583	20	2.2	20	86	0	59	48	0	6	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52620912--52620974	28	2.2	28	100	0	126	38	9	28	23	1.86
52631099--52631147	19	2.5	19	83	3	62	55	4	10	30	1.52
52632112--52632137	9	2.9	9	100	0	52	46	0	0	53	1.00
52636333--52636409	40	1.9	40	83	0	100	36	19	27	16	1.93
52639072--52639096	12	2.1	12	100	0	50	36	16	32	16	1.90
52643790--52643841	15	3.5	15	78	0	59	40	15	19	25	1.90
52653246--52653275	2	14.5	2	93	6	51	46	3	0	50	1.18
52659138--52659281	43	3.3	43	85	0	180	31	25	18	25	1.97
52659160--52659303	43	3.4	42	81	6	157	24	24	20	31	1.98
52660065--52660093	14	2.1	14	93	6	51	51	13	0	34	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211