genome.fa.s21.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  22  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6799257--6799301	21	2.2	20	84	11	56	37	2	0	60	1.09
6799258--6799301	20	2.2	20	84	8	54	38	2	0	59	1.10
6800598--6800626	14	2.1	14	100	0	58	34	27	6	31	1.83
6801306--6801460	60	2.7	56	83	7	211	25	23	12	38	1.91
6805800--6805829	14	2.1	14	100	0	60	43	20	6	30	1.77
6809534--6809581	21	2.1	23	85	11	64	22	14	6	56	1.61
6815493--6815569	14	5.0	15	71	20	52	42	15	9	32	1.78
6815509--6815548	20	2.0	20	90	0	62	50	12	10	27	1.72
6815497--6815563	34	1.9	35	90	3	109	46	13	8	31	1.74
6815532--6815571	14	2.9	14	84	0	53	42	17	7	32	1.77
6828677--6828713	15	2.4	16	82	17	51	2	18	0	78	0.87
6829512--6829635	42	3.0	42	84	2	160	20	25	37	16	1.93
6835295--6835419	43	2.9	43	83	3	137	32	25	15	27	1.95
6839453--6839554	42	2.4	42	88	0	150	26	20	34	18	1.96
6839463--6839576	42	2.7	41	85	8	131	24	20	35	20	1.96
6840694--6840737	24	1.9	24	90	9	74	36	0	2	61	1.09
6840804--6841004	59	3.1	66	84	13	276	44	9	4	40	1.58
6840993--6841034	16	2.6	16	92	0	66	42	7	2	47	1.43
6841008--6841063	23	2.5	23	82	2	69	44	1	1	51	1.22
6842015--6842044	10	3.0	10	95	0	51	6	53	0	40	1.27
6848815--6848857	6	7.2	6	94	0	77	18	51	13	16	1.77
6854506--6854543	17	2.1	19	85	14	53	47	0	10	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6855530--6855790	18	14.8	18	71	13	161	45	11	12	30	1.77
6855578--6855794	34	6.2	34	74	10	172	46	11	13	28	1.78
6855772--6855804	15	2.1	16	88	5	50	48	6	15	30	1.69
6856659--6856708	8	6.4	8	79	4	57	8	8	0	84	0.79
6856653--6856739	13	6.7	13	75	18	58	4	13	0	81	0.84
6856693--6856742	4	12.5	4	76	16	50	2	20	0	78	0.86
6856681--6856745	23	2.8	23	93	4	105	1	20	0	78	0.83
6856840--6856881	20	2.1	20	86	0	57	2	26	11	59	1.45
6857004--6857048	23	2.0	23	82	8	56	4	11	17	66	1.38
6857280--6857441	59	2.7	59	77	11	161	39	6	21	32	1.78
6857280--6857449	29	5.8	29	74	13	127	40	6	21	31	1.79
6857336--6857468	60	2.2	58	79	10	135	39	5	24	30	1.77
6857336--6857467	29	4.5	31	78	12	93	39	5	25	30	1.78
6857646--6858231	78	7.6	78	84	6	596	35	20	16	27	1.94
6859133--6859204	15	4.9	15	76	8	58	1	6	9	81	0.92
6859133--6859204	7	9.9	7	74	16	58	1	6	9	81	0.92
6859124--6859186	24	2.6	24	82	12	76	0	7	9	82	0.84
6864624--6864862	18	13.6	18	71	14	142	45	10	12	31	1.76
6864623--6864874	35	7.1	35	73	10	181	44	10	12	32	1.76
6864660--6864874	53	4.1	53	73	12	174	45	11	13	30	1.78
6864856--6864888	15	2.1	16	94	5	59	42	6	18	33	1.75
6864847--6864892	16	2.7	19	75	25	57	41	6	17	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6864950--6864988	18	2.2	18	86	9	53	48	10	15	25	1.76
6865620--6865657	19	2.0	20	89	5	60	2	18	15	63	1.43
6865755--6865843	9	9.7	9	79	10	76	2	15	0	82	0.78
6865755--6865840	13	6.5	13	80	9	86	2	15	0	82	0.77
6865759--6865846	22	4.0	22	82	12	101	2	15	0	81	0.78
6871589--6871722	59	2.2	60	79	9	148	38	5	21	33	1.78
6871559--6871713	30	5.2	29	72	14	120	40	6	21	31	1.79
6874295--6874325	16	1.9	16	93	0	53	48	0	0	51	1.00
6879025--6879160	38	3.6	38	88	5	195	26	13	22	38	1.91
6883944--6884013	10	7.2	10	76	12	65	60	4	0	35	1.17
6889920--6889980	11	5.3	11	75	9	50	45	3	0	50	1.17
6893793--6893889	33	2.9	33	81	3	124	18	14	17	49	1.80
6895054--6895110	30	1.9	30	88	0	87	35	21	22	21	1.96
6895054--6895118	30	2.2	30	82	0	76	35	21	21	21	1.96
6902416--6902548	37	3.4	39	73	15	123	33	23	15	27	1.95
6904325--6904780	44	10.7	43	81	9	544	34	23	21	20	1.96
6904313--6904780	128	3.7	124	84	7	616	34	23	21	20	1.96
6904325--6904819	212	2.3	212	92	1	812	34	23	20	21	1.96
6904325--6904819	84	5.8	84	86	6	519	34	23	20	21	1.96
6905945--6905971	12	2.2	12	100	0	54	0	62	0	37	0.95
6906033--6906093	25	2.4	27	76	18	67	4	36	3	55	1.38
6906232--6906264	12	2.6	13	90	4	50	57	6	18	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6906586--6906611	13	2.0	13	100	0	52	15	7	7	69	1.35
6909991--6910043	21	2.5	21	90	0	79	32	37	7	22	1.82
6910294--6910329	16	2.2	16	90	0	54	63	11	0	25	1.27
6912169--6912366	99	2.0	99	98	0	387	33	17	19	29	1.94
6913445--6913495	22	2.3	22	76	6	59	80	11	3	3	0.98
6914986--6915119	41	3.1	42	69	19	132	27	26	22	23	1.99
6915015--6915142	41	3.0	41	65	20	109	26	25	22	25	2.00
6914932--6915194	86	3.1	85	86	3	357	28	23	23	25	2.00
6915219--6915460	45	5.2	45	64	21	138	30	18	21	30	1.96
6915185--6915473	95	3.0	95	93	0	497	31	18	21	29	1.97
6915443--6915535	46	2.0	46	83	4	116	24	18	25	31	1.98
6915375--6915872	134	3.7	131	77	10	483	28	18	23	29	1.98
6915506--6915912	132	3.1	130	77	9	410	28	19	23	28	1.98
6915375--6915912	268	2.0	265	89	1	808	28	19	23	28	1.98
6915872--6916779	82	11.0	82	93	1	1275	33	24	20	22	1.97
6915876--6916779	84	10.9	83	93	0	1277	33	24	20	22	1.97
6919850--6919961	46	2.4	46	93	0	197	39	10	14	35	1.81
6922085--6922109	12	2.1	12	100	0	50	32	16	16	36	1.90
6929080--6929130	23	2.3	23	83	10	61	29	19	3	47	1.68
6937591--6937674	43	2.0	43	84	9	111	48	2	2	46	1.28
6948467--6948513	19	2.5	19	86	6	60	25	19	10	44	1.82
6949732--6949793	30	2.1	30	82	14	76	74	9	6	9	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6949732--6949815	35	2.4	34	78	4	87	75	7	9	8	1.21
6950606--6950655	7	7.1	7	82	8	66	84	2	2	12	0.80
6950605--6950655	21	2.5	20	87	9	75	84	1	1	11	0.79
6952007--6952451	49	9.1	49	64	9	145	34	23	19	22	1.96
6952318--6954880	50	52.9	48	72	12	1696	31	20	20	27	1.98
6951923--6953958	95	21.0	95	83	6	1970	31	21	20	26	1.98
6952514--6953954	290	5.0	284	91	3	2089	31	20	21	27	1.98
6951923--6954780	195	14.7	195	83	6	2111	31	20	20	26	1.98
6953879--6954828	95	9.8	95	83	4	1082	31	19	20	27	1.97
6952068--6954728	290	9.2	290	85	6	1977	31	20	20	26	1.98
6953689--6954891	95	12.4	100	81	7	475	31	20	21	27	1.98
6953784--6954861	290	3.7	284	82	7	1092	31	19	21	27	1.97
6953929--6954861	385	2.4	385	85	5	1149	31	19	21	27	1.97
6954938--6954968	16	1.9	16	93	0	53	22	35	6	35	1.80
6955037--6956299	44	28.8	44	61	15	166	31	18	23	26	1.97
6955034--6956319	132	9.8	132	91	0	2029	31	18	23	26	1.97
6959254--6959349	5	19.8	5	76	14	85	79	0	15	5	0.91
6959255--6959344	14	6.4	14	72	12	85	78	0	15	5	0.92
6959260--6959351	23	3.9	23	86	10	123	77	0	16	6	0.97
6960227--6960806	89	6.4	90	69	13	259	31	17	20	30	1.95
6960225--6960805	180	3.2	180	86	0	806	31	17	20	30	1.95
6960918--6961106	96	2.0	97	84	1	254	34	17	19	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6960920--6961472	45	12.1	45	68	13	137	32	16	20	30	1.95
6960949--6961183	96	2.4	95	79	3	211	36	16	18	28	1.93
6961120--6961982	44	19.4	44	70	11	332	30	16	21	31	1.96
6961157--6961627	179	2.6	178	86	1	618	29	15	21	32	1.95
6961423--6961855	137	3.2	136	83	6	501	30	17	21	30	1.96
6963833--6963899	34	1.9	35	87	3	100	44	14	8	31	1.76
6976619--6976648	9	3.2	9	90	9	51	23	0	0	76	0.78
6976612--6976648	19	1.9	19	94	0	65	29	0	0	70	0.88
6976675--6976740	21	3.2	20	77	10	69	65	10	1	22	1.32
6976675--6976753	19	3.9	19	74	16	61	60	11	1	26	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211