genome.fa.s21.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  144  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45476641--45476673	10	3.0	11	86	13	50	27	0	0	72	0.85
45476775--45476905	19	6.6	19	65	22	72	33	0	11	54	1.36
45476876--45476959	27	3.1	27	96	0	150	35	0	11	52	1.38
45476845--45476959	19	6.1	19	71	18	89	33	0	12	53	1.38
45477000--45477121	60	2.0	60	87	3	174	31	0	13	54	1.46
45477154--45477235	38	2.2	38	97	0	155	54	3	2	39	1.31
45477272--45477313	16	2.7	15	85	7	57	38	2	2	57	1.25
45477387--45477430	21	2.1	21	95	0	79	59	11	0	29	1.32
45477464--45477501	19	1.9	19	89	5	58	57	7	0	34	1.28
45477500--45477566	27	2.5	27	97	0	125	11	32	23	31	1.91
45479778--45479810	16	2.1	16	94	0	57	36	3	36	24	1.71
45480142--45480194	15	3.7	14	78	12	54	56	1	0	41	1.10
45480283--45480317	18	2.0	17	88	5	52	54	0	0	45	0.99
45480382--45480433	15	3.6	15	80	12	56	53	1	0	44	1.11
45480021--45480678	120	5.5	120	95	0	1147	49	5	2	42	1.38
45480619--45480901	91	3.0	93	84	6	324	48	3	3	44	1.35
45480660--45480901	47	5.3	46	68	17	148	47	4	3	45	1.38
45480719--45480779	28	2.2	28	85	5	81	50	3	0	45	1.17
45480694--45480901	91	2.3	91	92	0	335	46	4	3	45	1.39
45480719--45480861	44	3.2	44	67	16	112	48	3	2	45	1.31
45485411--45485435	5	5.0	5	100	0	50	60	40	0	0	0.97
45487740--45488308	126	4.5	126	89	2	806	30	16	23	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45491338--45491503	37	4.4	38	66	14	110	41	6	9	42	1.62
45491319--45491597	114	2.4	114	98	0	531	41	6	8	43	1.63
45491601--45492330	22	33.9	22	80	7	788	27	0	29	42	1.60
45491601--45492301	43	16.4	43	82	5	791	27	0	28	42	1.61
45492271--45492329	27	2.1	28	87	3	84	22	0	33	44	1.53
45491601--45492301	21	32.8	21	81	7	752	27	0	28	42	1.61
45492850--45492892	18	2.4	18	84	0	59	48	6	27	16	1.71
45493540--45493565	7	3.7	7	100	0	52	57	15	0	26	1.38
45493734--45493771	20	1.9	20	84	10	51	55	7	2	34	1.43
45494777--45494822	11	4.0	12	78	16	53	41	2	32	23	1.67
45497155--45497200	23	2.0	23	100	0	92	43	8	13	34	1.74
45497015--45497318	159	1.9	159	100	0	608	34	18	20	27	1.95
45499648--45499690	19	2.3	19	83	0	50	34	0	4	60	1.17
45500749--45500778	12	2.4	12	94	5	51	43	0	3	53	1.17
45506426--45506601	87	2.0	87	100	0	352	29	13	19	37	1.90
45508121--45508246	62	2.0	62	92	0	207	30	11	14	44	1.79
45510356--45510420	33	2.0	33	96	0	121	21	13	6	58	1.57
45513691--45513726	12	3.0	12	91	0	54	52	16	2	27	1.57
45516582--45516702	39	3.1	39	91	0	206	29	21	13	35	1.91
45516962--45516991	13	2.3	13	100	0	60	40	43	0	16	1.48
45517126--45517193	9	7.4	9	79	9	75	23	8	26	41	1.83
45521544--45521584	21	2.0	21	85	0	55	63	12	9	14	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45525537--45525570	15	2.2	16	89	5	52	50	0	8	41	1.34
45527606--45527641	16	2.2	16	90	0	54	36	11	16	36	1.84
45529573--45529632	31	1.9	32	83	10	79	21	6	41	30	1.79
45539191--45539322	19	6.8	19	88	3	201	37	9	15	37	1.81
45539191--45539329	59	2.4	57	87	6	201	37	9	15	37	1.80
45539816--45539859	18	2.5	17	77	3	52	9	9	4	77	1.12
45540071--45540119	24	2.0	25	88	8	73	32	8	4	55	1.48
45540787--45540983	98	2.0	98	95	0	358	27	10	24	36	1.89
45545450--45545483	9	3.8	9	88	11	52	91	8	0	0	0.43
45545448--45545483	15	2.5	14	91	8	63	91	8	0	0	0.41
45546764--45547001	127	1.9	128	92	0	406	28	20	26	24	1.99
45547057--45547340	44	6.5	43	75	10	222	29	19	22	28	1.98
45547057--45547222	89	1.9	88	80	7	192	28	18	24	28	1.98
45547528--45547659	19	6.8	19	91	3	219	37	10	15	36	1.82
45547528--45547666	59	2.4	57	89	6	219	38	10	15	36	1.81
45548396--45548444	24	2.0	25	88	8	73	32	8	4	55	1.48
45549076--45549270	98	2.0	98	91	0	318	28	9	24	37	1.87
45555448--45555497	23	2.2	23	85	0	64	40	0	8	52	1.31
45556351--45556385	17	1.9	18	88	11	54	22	0	0	77	0.78
45561556--45561596	14	2.9	15	86	10	52	63	7	0	29	1.21
45561573--45561605	10	3.2	10	91	8	57	60	0	0	39	0.97
45561632--45561669	16	2.4	16	86	8	51	63	2	5	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45561858--45561915	25	2.3	26	82	8	75	56	3	6	32	1.42
45563504--45564039	201	2.7	199	85	3	693	25	17	22	34	1.96
45563483--45564044	50	11.2	50	77	4	461	25	18	22	33	1.96
45563504--45564088	100	5.8	100	83	4	660	26	17	22	33	1.96
45567941--45568010	34	2.1	34	97	0	131	58	2	10	28	1.45
45570006--45570052	19	2.5	20	86	6	62	48	8	17	25	1.74
45570514--45570548	16	2.2	16	89	0	52	45	20	17	17	1.85
45572273--45572326	26	2.1	25	86	3	72	61	3	1	33	1.25
45572287--45572321	11	3.0	12	91	8	63	60	0	0	40	0.97
45572274--45572318	15	3.3	14	84	12	58	62	4	0	33	1.15
45572573--45572630	25	2.3	26	82	8	75	56	3	6	32	1.42
45577272--45577321	23	2.2	24	85	10	77	40	0	8	52	1.31
45578127--45578175	17	3.1	17	77	17	59	18	6	2	73	1.14
45578136--45578168	14	2.3	15	89	5	50	18	6	0	75	1.00
45578127--45578168	19	2.4	17	88	8	57	19	4	0	76	0.96
45578242--45578271	6	5.0	6	100	0	60	16	0	0	83	0.65
45592836--45592862	13	2.1	13	100	0	54	29	7	14	48	1.71
45606578--45606610	15	2.2	15	100	0	66	24	6	24	45	1.75
45622215--45622259	21	2.1	21	91	0	72	17	28	22	31	1.97
45625962--45626022	30	2.1	28	82	11	70	52	0	0	47	1.00
45629004--45629081	3	27.3	3	77	10	83	29	0	0	70	0.87
45629013--45629081	11	5.5	12	79	20	79	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45629015--45629056	8	5.0	8	83	11	57	28	0	0	71	0.86
45630682--45630753	34	2.1	34	97	0	135	52	11	8	27	1.65
45630824--45630854	3	10.3	3	100	0	62	67	0	0	32	0.91
45632214--45632258	17	2.8	17	87	12	60	42	8	0	48	1.34
45637727--45637756	15	1.9	16	93	6	53	63	0	0	36	0.95
45637722--45637781	16	3.7	15	75	18	57	68	1	0	30	0.99
45637722--45637786	34	1.9	33	84	9	87	67	1	0	30	1.00
45641352--45641433	9	8.7	9	72	15	58	64	0	2	32	1.07
45641357--45641401	21	2.0	23	87	8	67	64	0	2	33	1.06
45641370--45641395	12	2.2	12	100	0	52	69	0	0	30	0.89
45647530--45647570	16	2.6	16	80	0	55	26	24	12	36	1.91
45654845--45655031	93	2.0	93	100	0	374	32	8	14	44	1.76
45658464--45658704	50	4.8	50	84	1	288	23	29	20	26	1.99
45674190--45674281	27	3.4	27	87	3	123	25	29	28	17	1.97
45674355--45674394	11	3.7	11	83	6	55	72	0	27	0	0.85
45674355--45674388	10	3.4	10	92	8	52	73	0	26	0	0.83
45674419--45674457	19	2.0	21	85	10	55	23	0	10	66	1.22
45674533--45674579	3	15.7	3	100	0	94	0	0	31	68	0.90
45674747--45674845	26	3.0	34	68	27	88	35	1	13	50	1.48
45675409--45675453	18	2.5	18	81	0	63	28	8	48	13	1.72
45679929--45680368	159	2.8	157	72	14	379	31	12	7	48	1.68
45681219--45681290	24	3.2	24	66	28	68	0	29	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45681242--45681339	4	23.0	4	74	15	81	1	29	0	69	0.95
45681199--45681339	42	3.5	42	81	9	152	0	32	0	66	0.97
45681382--45681448	27	2.5	27	92	0	107	14	25	29	29	1.95
45681398--45681457	27	2.2	27	81	0	75	15	30	26	28	1.96
45681904--45681959	24	2.3	25	81	9	71	44	14	5	35	1.68
45690580--45690635	7	8.0	7	84	15	64	67	0	16	16	1.23
45691958--45693091	44	26.0	45	70	11	457	27	17	27	27	1.98
45691871--45692860	218	4.5	218	93	0	1656	27	17	27	28	1.98
45691871--45693078	436	2.8	435	85	3	1218	27	17	27	28	1.98
45692940--45693254	157	2.0	157	90	0	495	27	18	28	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211