genome.fa.s21.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  205  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63455384--63455850	44	10.7	44	73	10	305	30	20	22	26	1.98
63455382--63455898	174	3.0	174	92	2	835	30	19	22	27	1.98
63455390--63455883	87	5.7	85	70	10	354	30	19	22	27	1.98
63459080--63459111	3	10.7	3	100	0	64	31	0	0	68	0.90
63465624--63465758	40	3.4	40	78	7	159	33	25	16	24	1.96
63465624--63465759	37	3.5	40	75	9	145	33	25	16	24	1.95
63467174--63467271	23	4.3	23	90	2	162	31	26	21	20	1.98
63467181--63467269	45	2.0	45	95	0	160	31	26	22	19	1.97
63467420--63467567	75	2.0	75	100	0	296	33	21	8	37	1.83
63469387--63469477	35	2.6	36	79	10	98	45	5	2	47	1.38
63490559--63490605	7	6.7	7	95	0	76	40	0	0	59	0.97
63490728--63490779	3	18.0	3	76	7	54	36	0	1	61	1.07
63490728--63490779	12	4.5	12	80	7	63	36	0	1	61	1.07
63490902--63490944	21	2.0	21	86	8	61	76	9	4	9	1.14
63491626--63491662	19	2.0	19	89	5	58	43	0	18	37	1.51
63491848--63491956	38	2.8	39	75	6	105	22	19	25	32	1.97
63493105--63493171	34	2.1	33	83	8	84	44	19	11	23	1.84
63493115--63493182	34	2.0	34	85	0	91	44	19	11	25	1.84
63500603--63500650	22	2.2	22	84	0	60	66	4	4	25	1.27
63503879--63504207	175	1.9	177	83	5	441	26	12	15	45	1.82
63509309--63509355	22	2.1	22	84	0	58	36	4	21	38	1.73
63509261--63509394	53	2.5	51	81	9	144	38	3	20	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63513438--63513485	14	3.4	14	80	5	60	2	16	6	75	1.11
63514497--63514672	96	1.8	97	86	2	255	40	14	14	29	1.86
63517665--63517719	28	2.0	27	85	3	74	20	18	10	50	1.76
63518658--63518705	18	2.7	18	83	6	62	64	4	0	31	1.12
63526578--63526614	7	5.3	7	93	0	56	62	0	0	37	0.96
63529217--63529254	6	6.3	6	93	0	67	18	31	0	50	1.47
63529222--63529262	18	2.3	18	86	0	55	21	31	0	46	1.52
63530340--63530583	132	1.9	132	88	0	373	40	20	9	29	1.83
63541435--63541474	20	2.0	20	85	0	53	22	35	15	27	1.94
63542991--63543050	25	2.5	23	81	5	66	41	11	20	26	1.86
63543158--63543205	25	1.9	25	87	8	71	41	16	18	22	1.90
63545023--63545117	47	2.0	47	95	0	172	42	21	8	28	1.82
63549805--63549834	6	5.0	6	100	0	60	83	0	16	0	0.65
63550814--63550887	32	2.3	32	85	0	103	50	13	16	20	1.78
63560702--63560741	18	2.3	18	86	4	55	55	2	2	40	1.27
63561904--63561960	30	1.9	30	100	0	114	45	10	15	28	1.79
63570961--63571011	18	2.8	18	74	14	59	66	5	0	27	1.14
63571778--63571821	23	2.0	23	86	8	65	36	0	2	61	1.09
63571780--63571860	29	2.8	28	83	12	92	39	0	1	59	1.05
63573589--63573616	7	4.0	7	100	0	56	28	0	0	71	0.86
63574261--63574340	36	2.2	36	80	8	83	61	7	2	28	1.36
63574468--63574496	8	3.6	8	100	0	58	89	0	10	0	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63577665--63577704	21	2.0	20	95	5	71	30	5	0	65	1.14
63581443--63581506	29	2.2	29	94	0	119	40	9	3	46	1.52
63583588--63583910	164	2.0	164	91	0	529	26	11	20	40	1.87
63590330--63590437	47	2.3	46	84	9	137	41	11	9	37	1.73
63598308--63598732	210	2.0	208	98	0	814	18	20	16	44	1.86
63601606--63601665	30	2.0	30	93	0	102	33	10	30	26	1.89
63603161--63603204	23	2.0	23	90	4	72	27	4	6	61	1.41
63606923--63606986	30	2.1	31	85	8	87	60	3	1	34	1.22
63609850--63609874	6	4.2	6	100	0	50	16	0	0	84	0.63
63617508--63617576	36	1.9	36	87	0	102	31	21	11	34	1.89
63626910--63626975	30	2.2	30	78	5	71	42	4	3	50	1.38
63632556--63632887	59	5.7	59	77	4	323	42	15	17	24	1.87
63632556--63632872	117	2.7	117	80	6	338	43	14	17	24	1.87
63634955--63634988	16	2.1	17	88	5	52	38	5	2	52	1.41
63642583--63642658	23	3.3	23	90	0	125	30	27	21	21	1.98
63643349--63643381	17	1.9	17	100	0	66	36	18	0	45	1.49
63648474--63648569	45	2.2	41	82	12	113	25	16	28	30	1.97
63652946--63652977	12	2.4	14	85	15	50	25	6	9	59	1.52
63661246--63661292	23	2.0	23	91	0	76	31	6	29	31	1.83
63665483--63665535	19	2.7	19	78	18	56	56	5	1	35	1.34
63666060--63666582	180	2.9	180	81	5	597	44	12	9	32	1.76
63672826--63672912	21	4.1	21	80	12	106	37	24	19	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63672826--63672912	44	2.0	41	82	10	104	37	24	19	18	1.94
63673907--63673936	13	2.2	13	94	5	51	0	13	6	80	0.91
63674062--63674099	14	2.4	17	87	12	55	52	0	0	47	1.00
63674061--63674124	23	2.7	24	80	9	78	46	1	0	51	1.10
63704947--63704981	1	35.0	1	88	0	52	0	5	0	94	0.32
63704947--63704978	12	2.7	12	100	0	64	0	6	0	93	0.34
63705600--63705648	20	2.4	21	77	12	57	16	8	0	75	1.03
63705619--63705691	26	2.9	25	76	13	69	13	13	1	71	1.22
63705960--63706001	10	3.8	11	85	14	52	35	0	0	64	0.94
63705960--63706009	22	2.3	22	80	16	59	36	0	0	64	0.94
63705969--63706010	11	3.7	11	84	12	50	33	0	0	66	0.92
63706990--63707061	35	2.1	35	89	0	108	43	26	9	20	1.83
63707573--63707770	108	1.8	107	88	3	299	28	16	25	30	1.96
63711122--63711167	22	2.2	20	88	11	67	26	0	28	45	1.54
63711151--63711330	51	3.6	51	84	11	214	31	0	22	46	1.56
63711216--63711400	30	6.7	29	78	16	169	28	0	25	45	1.57
63711126--63711357	74	3.1	74	84	10	264	29	0	25	44	1.57
63711142--63711390	52	4.8	52	77	16	246	29	0	24	45	1.59
63711126--63711330	23	8.5	23	76	17	186	30	0	23	45	1.57
63711211--63711400	29	6.8	29	80	10	170	28	0	24	46	1.57
63711906--63711940	18	1.9	18	94	0	61	34	8	31	25	1.86
63713735--63713821	29	3.2	29	65	26	82	43	0	24	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63713732--63713845	51	2.2	51	96	0	210	44	0	25	29	1.54
63714758--63714849	31	3.0	30	74	12	89	44	7	6	41	1.59
63728578--63728764	36	5.2	36	84	0	205	17	13	53	16	1.73
63728578--63728848	36	7.2	36	80	10	193	15	11	54	17	1.70
63728689--63728850	83	1.9	84	93	1	281	12	8	59	19	1.57
63728722--63728812	24	3.7	24	82	11	114	10	7	60	20	1.55
63729056--63729097	12	3.5	12	86	0	57	11	2	71	14	1.24
63729045--63729095	18	2.8	18	74	11	50	15	3	64	15	1.43
63729384--63729410	3	9.0	3	100	0	54	0	0	66	33	0.92
63740808--63741034	110	2.1	110	99	0	445	23	14	18	42	1.88
63746869--63746900	6	5.3	6	100	0	64	81	0	18	0	0.70
63748835--63749185	192	1.8	193	84	4	485	19	11	22	46	1.81
63761221--63761257	13	2.8	13	83	0	56	13	5	0	81	0.86
63761221--63761260	6	6.3	6	85	8	53	15	5	0	80	0.88
63761222--63761258	19	1.9	20	94	5	67	16	5	0	78	0.93
63767046--63767072	12	2.2	12	100	0	54	22	29	14	33	1.94
63774518--63774549	11	2.9	11	100	0	64	34	28	9	28	1.88
63774822--63774861	21	1.9	21	90	10	64	40	0	0	60	0.97
63775898--63775945	17	2.7	18	83	6	62	58	0	2	39	1.10
63782667--63782693	4	6.8	4	100	0	54	48	25	0	25	1.52
63785085--63785119	18	1.9	18	94	0	61	48	0	2	48	1.16
63785246--63785297	20	2.6	21	77	20	65	46	1	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63785457--63785489	6	5.5	6	100	0	66	15	0	0	84	0.61
63789983--63790068	43	2.0	43	100	0	172	32	4	16	46	1.67
63803025--63803081	23	2.5	23	77	5	62	47	1	1	49	1.22
63803809--63803864	24	2.3	24	79	14	62	32	0	17	50	1.47
63805293--63805541	50	4.8	50	83	5	293	20	28	24	26	1.99
63805292--63805541	100	2.4	105	87	6	350	20	28	24	26	1.99
63805635--63805666	13	2.5	13	94	0	55	56	12	0	31	1.37
63806142--63806167	13	2.0	13	100	0	52	46	15	7	30	1.74
63807916--63808013	23	4.3	23	93	2	171	30	26	22	20	1.98
63807923--63808011	45	2.0	45	97	0	169	30	26	23	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211