genome.fa.s21.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  52  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15647018--15647050	16	2.1	16	88	11	50	60	3	3	33	1.27
15651313--15651434	45	2.7	45	82	3	129	19	22	17	40	1.91
15651354--15651569	45	4.8	45	78	3	186	22	18	18	40	1.91
15663262--15663301	14	2.6	16	88	7	57	57	0	0	42	0.98
15663262--15663305	15	2.9	16	83	16	58	56	0	0	43	0.99
15671344--15671586	50	4.7	50	83	5	272	24	29	20	25	1.99
15671344--15671586	100	2.4	102	84	5	312	24	29	20	25	1.99
15671930--15671990	30	2.1	30	84	3	79	36	22	3	37	1.71
15674189--15674239	24	2.1	24	88	0	75	52	9	1	35	1.46
15676326--15676363	18	2.1	18	85	9	51	60	5	21	13	1.52
15676658--15676760	42	2.5	42	85	3	136	23	25	21	30	1.99
15679531--15679582	24	2.2	24	82	0	59	53	7	3	34	1.48
15684090--15684179	25	3.5	25	79	10	92	24	25	18	31	1.98
15689701--15689752	23	2.2	24	86	6	72	57	0	1	40	1.10
15693139--15693187	21	2.3	21	85	0	62	51	4	4	40	1.40
15701353--15701391	19	2.1	18	86	13	53	23	17	17	41	1.91
15704293--15704368	40	1.9	40	89	10	120	44	10	21	23	1.83
15710220--15710304	42	2.0	42	100	0	170	30	7	25	36	1.83
15721366--15721445	4	20.0	4	100	0	160	50	0	25	25	1.50
15724018--15724109	33	2.7	33	75	12	80	28	21	17	32	1.96
15726755--15726797	19	2.2	20	95	4	79	23	0	27	48	1.51
15732491--15732539	13	3.6	13	81	15	55	22	4	0	73	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15732490--15732523	18	1.9	17	88	5	50	23	0	0	76	0.79
15732485--15732546	23	2.7	24	80	12	67	19	4	0	75	0.97
15732500--15732572	32	2.3	31	81	13	78	19	8	1	71	1.19
15734277--15734340	28	2.5	25	85	10	76	20	3	9	67	1.33
15739128--15739181	11	4.3	12	75	15	56	61	3	3	31	1.31
15741090--15741236	44	3.4	44	82	4	190	33	23	16	27	1.95
15753163--15753208	18	2.6	18	80	16	51	69	4	6	19	1.28
15753348--15753453	9	11.1	10	70	18	50	59	1	3	34	1.26
15753415--15753488	3	24.7	3	74	20	66	62	4	4	29	1.32
15756836--15756902	14	4.9	14	73	10	50	46	28	1	23	1.61
15760544--15760640	9	9.8	10	69	18	53	38	1	1	59	1.11
15760523--15760594	30	2.4	29	84	9	83	34	2	1	61	1.19
15760531--15760637	40	2.7	40	85	7	153	36	1	0	60	1.14
15760561--15760641	11	7.7	11	71	16	57	39	1	1	58	1.14
15760601--15760652	23	2.2	23	82	3	68	44	0	0	55	0.99
15760608--15760667	22	2.6	23	79	12	61	45	0	1	53	1.10
15768050--15768157	40	2.7	40	82	7	112	25	27	21	25	1.99
15768056--15768223	79	2.1	79	80	7	180	27	27	20	25	1.99
15768094--15768223	40	3.3	40	86	3	183	29	26	20	23	1.99
15768097--15768274	79	2.3	79	80	13	190	28	26	20	24	1.99
15775147--15775293	40	3.7	40	83	5	120	25	27	21	25	2.00
15775193--15775373	80	2.3	80	83	9	219	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15775190--15775373	40	4.6	40	81	7	196	28	27	20	23	1.99
15778033--15778077	22	2.0	22	83	8	56	40	4	0	55	1.20
15787687--15787725	20	2.0	20	85	10	53	28	7	5	58	1.47
15790214--15790321	15	7.2	15	69	12	87	43	7	23	25	1.79
15790207--15790321	30	3.8	30	97	0	203	44	6	23	25	1.78
15794907--15794984	15	5.2	15	70	11	70	43	7	23	25	1.80
15794900--15794984	30	2.8	30	96	0	152	44	7	23	24	1.78
15803070--15803197	27	4.7	27	80	7	127	22	10	21	45	1.83
15803061--15803213	54	2.8	53	78	9	166	22	11	20	45	1.84
15803071--15803222	27	5.6	27	80	10	125	21	9	21	46	1.80
15819904--15820166	135	1.9	135	88	0	391	43	12	16	27	1.84
15826655--15826694	20	2.0	20	90	0	62	62	5	0	32	1.17
15828216--15828297	41	2.0	41	100	0	164	36	14	9	39	1.79
15830047--15830096	20	2.5	20	75	12	57	42	6	10	42	1.63
15830178--15830223	18	2.6	18	89	0	65	63	0	6	30	1.20
15832038--15832123	44	2.0	44	85	0	118	24	24	19	31	1.98
15832249--15832589	44	7.6	44	68	17	148	29	23	17	29	1.97
15832819--15833122	89	3.4	89	84	0	410	23	23	22	29	1.99
15834509--15834588	5	16.4	5	72	21	55	3	15	0	81	0.83
15834511--15834598	14	5.9	14	74	16	70	3	14	0	81	0.81
15834508--15834576	20	3.5	20	81	14	83	4	13	0	82	0.81
15834507--15834599	20	4.6	20	77	15	82	3	15	0	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15834511--15834599	15	5.9	14	74	19	81	3	14	0	82	0.80
15838637--15838776	69	2.0	71	87	2	203	34	19	18	27	1.95
15839348--15839456	38	3.0	37	80	11	102	55	2	8	33	1.44
15839618--15839663	18	2.6	18	92	0	74	63	0	4	32	1.14
15839625--15839683	21	3.0	20	79	11	61	59	3	1	35	1.24
15843807--15843857	26	2.0	26	96	0	93	11	23	35	29	1.90
15843729--15844092	102	3.6	101	93	3	597	19	20	29	30	1.97
15850918--15850969	26	2.0	26	96	0	95	13	23	34	28	1.92
15850840--15851206	103	3.6	101	93	2	599	19	19	29	30	1.97
15851124--15851175	26	2.0	26	96	0	95	13	23	34	28	1.92
15861484--15861586	53	2.0	52	82	5	127	23	10	31	34	1.89
15869437--15869480	22	2.0	21	83	12	54	43	0	0	56	0.99
15878558--15878597	16	2.4	16	88	12	55	37	0	0	62	0.95
15880747--15880819	26	2.8	26	89	0	110	28	17	10	42	1.83
15888322--15888349	4	7.0	4	100	0	56	25	25	0	50	1.50
15898039--15898136	27	3.5	28	90	2	135	26	13	28	31	1.94
15898067--15898149	27	3.0	27	87	5	96	30	12	25	32	1.92
15905880--15905998	28	4.2	28	89	5	159	26	12	26	33	1.92
15905880--15905998	57	2.1	57	85	6	161	26	12	26	33	1.92
15917776--15917915	50	2.8	50	80	5	151	19	28	20	32	1.97
15917849--15917915	25	2.7	25	83	0	89	19	28	25	26	1.99
15921039--15921100	31	2.2	31	86	13	89	22	9	9	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15922324--15922379	28	2.0	28	100	0	112	21	28	17	32	1.96
15926263--15926505	50	4.8	50	86	0	324	27	21	29	21	1.99
15926263--15926505	100	2.4	100	88	0	360	27	21	29	21	1.99
15933369--15933560	50	3.8	50	86	2	260	27	22	29	20	1.99
15938124--15938157	17	2.0	17	88	11	52	47	11	0	41	1.40
15938671--15938702	2	16.0	2	100	0	64	50	0	50	0	1.00
15939149--15939177	4	7.2	4	100	0	58	51	0	24	24	1.48
15958002--15958532	51	10.8	51	77	10	514	29	15	23	31	1.96
15958032--15958519	97	5.0	97	86	3	640	29	15	23	30	1.96
15958550--15958673	44	2.8	44	77	7	144	27	20	25	26	1.99
15958441--15958872	238	1.8	238	84	1	578	31	17	21	29	1.96
15963112--15963227	57	2.0	57	86	0	160	42	13	13	30	1.84
15965289--15965335	23	2.0	23	91	0	76	17	0	17	65	1.27
15965293--15965428	55	2.6	50	76	13	139	23	1	18	56	1.49
15968709--15968760	24	2.2	24	89	6	79	17	42	7	32	1.77
15968724--15968772	24	2.0	24	84	0	62	20	36	8	34	1.82
15975969--15976022	3	18.0	3	100	0	108	33	0	0	66	0.92
15980617--15980709	49	1.9	48	95	2	168	49	8	10	31	1.68
15983657--15983804	54	2.6	54	83	10	181	26	15	12	45	1.82
15984814--15984855	15	2.8	15	85	0	66	26	19	9	45	1.80
15993878--15993933	24	2.3	24	81	0	76	30	17	5	46	1.71
15995211--15995308	25	3.9	25	72	13	76	34	19	21	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15997345--15997396	24	2.2	24	89	0	77	32	17	5	44	1.72
15997351--15997397	24	2.0	24	95	0	85	29	14	4	51	1.62
15998528--15998572	21	2.2	20	84	4	54	40	13	13	33	1.83
16000415--16000562	74	2.0	74	95	0	269	38	8	14	37	1.78
16002039--16002088	26	1.9	26	91	0	82	36	6	20	38	1.77
16002047--16002130	42	2.0	42	97	0	159	34	7	22	35	1.82
16002089--16002153	26	2.5	26	78	9	87	40	6	18	35	1.76
16004047--16004124	27	2.9	27	77	7	86	16	26	21	34	1.95
16006942--16006979	14	2.7	14	91	0	58	89	2	7	0	0.57
16006941--16006979	20	1.9	21	89	5	62	87	2	10	0	0.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211