genome.fa.s21.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  127  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40090972--40091228	139	1.9	139	86	4	369	40	5	10	42	1.64
40091779--40091824	16	2.8	17	83	6	58	19	8	2	69	1.25
40102990--40103037	24	2.0	24	95	0	87	43	6	12	37	1.68
40103611--40103646	19	1.9	18	94	5	63	83	5	0	11	0.80
40104054--40104316	42	6.3	42	84	5	334	20	18	23	37	1.94
40105976--40106246	69	3.9	69	76	10	243	38	25	20	15	1.92
40106425--40106601	58	3.1	58	90	0	266	40	15	12	31	1.85
40111928--40111984	25	2.3	25	100	0	114	43	14	14	28	1.83
40115533--40115594	23	2.7	23	82	7	72	40	17	11	30	1.85
40119826--40119868	21	2.0	20	82	8	50	32	16	11	39	1.84
40123441--40123465	13	1.9	13	100	0	50	28	16	8	48	1.74
40128630--40128767	66	2.1	65	84	8	172	42	18	23	14	1.88
40129096--40129243	42	3.5	42	86	1	163	24	19	29	26	1.98
40129145--40129291	42	3.5	42	89	0	188	22	16	30	30	1.96
40129507--40129565	29	2.0	30	83	9	77	35	3	8	52	1.49
40129516--40129576	30	2.1	29	82	14	72	34	3	6	55	1.42
40131362--40131403	22	1.9	22	85	0	57	38	9	0	52	1.34
40132239--40132290	18	2.8	19	88	5	88	71	9	0	19	1.13
40135727--40135760	2	17.0	2	100	0	68	50	0	0	50	1.00
40140820--40140871	20	2.6	19	76	11	50	44	1	19	34	1.62
40141249--40141286	20	1.9	20	88	0	58	39	7	10	42	1.69
40141582--40141641	22	2.7	23	75	19	63	21	25	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40141821--40141861	20	2.0	21	90	4	66	36	4	19	39	1.73
40141826--40141873	20	2.4	20	85	0	60	33	10	16	39	1.83
40142808--40142832	13	1.9	13	100	0	50	48	0	16	36	1.46
40147691--40147742	20	2.6	19	76	11	50	44	1	19	34	1.62
40148458--40148580	23	5.3	23	71	15	67	22	21	18	36	1.95
40148458--40148554	45	2.1	46	88	3	142	20	23	19	36	1.95
40148458--40148554	23	4.2	22	73	16	81	20	23	19	36	1.95
40170076--40170178	45	2.3	45	86	0	143	15	18	19	46	1.84
40190607--40191297	44	15.7	44	65	10	275	30	20	24	24	1.99
40190607--40191303	132	5.3	132	95	0	1241	30	20	24	24	1.99
40191185--40191397	118	1.8	118	84	5	299	28	23	23	25	1.99
40199719--40199751	14	2.5	13	95	5	57	66	0	15	18	1.25
40211768--40211990	111	2.0	110	94	0	392	30	24	14	30	1.95
40212198--40212309	61	1.9	58	85	5	152	49	8	3	39	1.50
40218759--40218910	56	2.8	54	79	9	143	36	12	28	22	1.90
40223192--40223447	130	2.0	130	91	0	413	37	9	15	37	1.81
40224759--40224816	28	2.1	28	96	0	107	34	8	3	53	1.49
40228309--40228499	27	7.1	27	78	3	170	34	14	21	29	1.93
40228309--40228495	54	3.5	54	79	2	214	34	14	21	29	1.93
40238162--40238255	49	1.9	49	95	4	172	20	25	13	40	1.89
40249139--40249199	27	2.4	25	82	12	79	65	4	0	29	1.13
40258467--40258533	34	2.0	34	96	0	125	44	25	4	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40280668--40280721	21	2.5	22	82	11	67	46	7	0	46	1.31
40280685--40280717	11	3.1	11	82	8	50	51	0	0	48	1.00
40280962--40280996	18	1.9	18	88	0	52	17	28	31	22	1.96
40287567--40287600	11	2.8	12	86	13	52	67	5	0	26	1.13
40288562--40288676	25	4.7	24	69	18	60	52	3	2	41	1.32
40291313--40291349	5	7.6	5	87	6	58	75	2	0	21	0.92
40291313--40291349	15	2.6	14	91	8	65	75	2	0	21	0.92
40303242--40303270	7	4.1	7	100	0	58	58	27	0	13	1.36
40312691--40312717	14	1.9	14	100	0	54	44	22	0	33	1.53
40320400--40320484	35	2.4	35	96	0	152	38	12	5	42	1.68
40321216--40321257	15	2.8	15	75	13	50	71	2	11	14	1.24
40321215--40321280	21	3.6	17	77	18	71	72	1	12	13	1.19
40322528--40322779	44	5.7	44	88	0	319	28	21	26	23	1.99
40323048--40323164	44	2.7	43	78	7	119	29	16	23	30	1.96
40323252--40323534	50	5.7	50	75	9	281	35	23	16	24	1.95
40323222--40323599	100	3.8	100	86	3	485	34	24	17	23	1.95
40328371--40328540	90	1.9	90	97	0	322	35	11	20	32	1.89
40338904--40338988	42	2.0	42	100	0	170	25	14	16	43	1.85
40343712--40343755	21	2.0	23	86	8	65	54	2	4	38	1.33
40344605--40344648	22	2.0	23	86	4	63	65	2	0	31	1.05
40344605--40344656	14	3.9	14	77	7	63	65	1	0	32	1.04
40345091--40345143	20	2.7	20	84	0	61	54	5	5	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40349588--40349937	54	6.5	54	77	3	301	31	18	13	36	1.89
40349588--40349951	162	2.2	162	79	1	417	31	17	13	37	1.89
40360073--40360156	43	2.0	43	90	4	134	35	16	13	34	1.88
40362631--40362659	9	3.3	9	90	9	51	68	0	0	31	0.89
40362612--40362652	21	2.0	20	90	4	64	68	0	0	31	0.90
40362789--40362827	13	3.1	13	88	3	62	23	5	2	69	1.21
40362801--40362846	20	2.2	20	84	7	56	26	2	4	67	1.21
40365298--40365340	23	1.9	22	85	4	59	25	4	6	62	1.40
40365361--40365387	3	9.0	3	100	0	54	33	0	0	66	0.92
40365713--40365753	6	6.8	6	100	0	82	51	14	0	34	1.43
40365878--40365977	46	2.2	46	83	3	130	38	13	2	47	1.54
40371002--40371054	9	5.6	9	82	10	61	83	3	11	1	0.87
40371420--40371628	108	2.0	105	81	10	252	25	16	9	48	1.76
40372506--40372733	89	2.6	89	83	1	305	31	25	22	20	1.98
40373230--40373429	41	4.8	41	84	3	238	28	20	22	30	1.98
40375112--40375194	3	27.3	3	71	20	57	32	2	2	62	1.21
40375656--40375757	46	2.2	46	82	3	125	38	11	1	48	1.51
40375633--40375763	42	3.1	41	73	11	113	35	9	3	51	1.54
40379957--40379981	2	12.5	2	100	0	50	0	48	0	52	1.00
40383218--40383252	6	5.8	6	96	0	52	62	0	37	0	0.95
40384478--40384546	31	2.2	31	90	7	113	40	4	13	42	1.63
40385900--40385949	27	1.9	25	84	8	64	66	4	8	22	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40385932--40385976	20	2.3	20	85	11	58	68	2	15	13	1.30
40398043--40398082	10	4.3	10	81	15	50	67	0	0	32	0.91
40398043--40398082	18	2.2	19	90	4	64	67	0	0	32	0.91
40401480--40401504	5	5.0	5	100	0	50	80	0	20	0	0.72
40409173--40409217	23	2.0	23	81	0	54	26	4	20	48	1.68
40414764--40414839	25	3.0	25	66	19	59	32	22	14	30	1.94
40414827--40414884	25	2.3	25	82	5	73	43	24	10	22	1.84
40416850--40416968	59	2.0	59	95	1	213	36	21	11	30	1.89
40420538--40420588	14	3.6	14	76	21	52	58	15	5	19	1.57
40435453--40435582	36	3.6	36	84	0	161	29	25	19	26	1.98
40439741--40439804	24	2.6	24	85	7	76	57	3	3	35	1.30
40443673--40443911	43	5.6	43	85	1	309	27	30	17	24	1.98
40443673--40443946	85	3.2	86	83	2	316	28	29	17	24	1.97
40443673--40443911	128	1.9	128	89	0	370	27	30	17	24	1.98
40445565--40445644	39	2.1	39	100	0	160	31	18	12	37	1.88
40447872--40447913	3	14.0	3	100	0	84	66	0	33	0	0.92
40448947--40449009	29	2.2	29	88	0	90	34	41	0	23	1.55
40449434--40449590	41	3.8	40	80	4	163	31	26	22	19	1.98
40452840--40453022	57	3.2	57	86	0	249	40	4	19	36	1.71
40466537--40466693	29	5.4	29	80	4	147	39	22	12	24	1.89
40466537--40466684	58	2.6	58	84	4	174	41	22	12	22	1.88
40468632--40468816	51	3.6	51	76	11	200	30	24	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40468627--40468812	101	1.8	99	86	5	257	30	24	17	26	1.97
40471477--40471815	51	6.7	50	77	8	323	28	15	26	30	1.96
40471477--40471814	102	3.3	102	83	6	379	27	15	26	30	1.96
40477168--40477341	51	3.4	50	82	7	208	31	26	18	24	1.98
40503596--40503636	11	3.8	11	78	15	50	26	26	2	43	1.67
40517010--40517116	49	2.2	48	88	5	153	34	23	13	28	1.92
40517536--40517581	13	3.5	13	78	3	56	54	15	4	26	1.59
40532588--40533300	44	16.4	44	68	16	215	28	23	19	28	1.98
40532537--40533314	217	3.6	217	90	1	1141	28	23	20	28	1.99
40546367--40546433	34	2.0	34	96	0	125	23	16	32	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211