genome.fa.s21.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  41  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12136452--12136539	9	10.9	8	71	23	51	65	3	0	30	1.09
12136459--12136659	10	21.0	9	69	17	86	60	2	1	34	1.23
12136784--12136826	17	2.6	16	77	3	50	23	0	2	74	0.93
12136953--12137070	10	12.2	10	73	13	86	31	3	2	62	1.25
12136969--12137041	19	3.7	19	79	18	78	31	4	2	61	1.29
12136968--12137066	19	5.3	17	79	12	74	31	3	2	63	1.21
12138670--12138727	30	1.9	30	85	0	80	43	5	22	29	1.75
12139179--12139273	23	4.1	23	86	0	136	23	20	25	31	1.98
12140215--12140285	22	3.2	22	62	18	56	42	7	14	36	1.72
12140211--12140305	45	2.1	45	100	0	190	43	8	12	35	1.73
12147108--12147132	3	8.3	3	100	0	50	68	0	32	0	0.90
12147344--12147386	21	2.1	21	86	4	61	74	0	23	2	0.93
12148655--12149321	89	7.5	89	88	1	960	28	25	22	23	1.99
12149334--12149567	44	5.2	44	82	4	272	30	18	23	27	1.98
12149334--12149594	89	2.9	89	85	6	343	30	18	22	28	1.97
12149355--12149605	133	1.9	131	83	6	326	29	18	22	29	1.98
12149616--12149871	131	1.9	132	84	0	334	30	20	24	24	1.98
12152463--12152487	6	4.2	6	100	0	50	0	16	16	68	1.22
12152606--12152782	10	18.8	10	69	21	59	35	1	1	61	1.13
12152603--12152669	30	2.2	30	84	10	84	37	1	1	59	1.16
12152611--12152782	9	18.4	9	65	18	50	34	1	1	62	1.10
12152614--12152662	21	2.2	23	79	17	59	38	2	0	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12152632--12152757	27	4.6	28	85	8	152	34	0	1	63	1.04
12152778--12152852	7	10.7	7	100	0	150	28	13	0	58	1.35
12153274--12153417	76	1.9	76	91	2	236	50	4	2	42	1.38
12172915--12172962	18	2.6	18	83	3	60	41	45	2	10	1.50
12172939--12172963	13	1.9	13	100	0	50	40	48	0	12	1.40
12173262--12173299	9	4.2	9	80	12	51	28	7	21	42	1.81
12188174--12188258	41	2.0	42	84	6	111	35	11	0	52	1.38
12193090--12193128	15	2.6	15	95	0	69	25	5	30	38	1.78
12197684--12197801	52	2.3	53	81	5	136	57	5	5	30	1.46
12198059--12198102	3	14.7	3	86	9	63	68	0	0	31	0.90
12198557--12198637	21	4.0	21	88	6	130	38	13	8	39	1.76
12198557--12198637	40	2.0	40	90	4	126	38	13	8	39	1.76
12198543--12198638	21	4.8	19	88	5	120	37	14	9	38	1.79
12199066--12199173	44	2.5	44	84	3	137	29	19	21	29	1.97
12199480--12199811	44	7.7	44	79	7	358	29	24	17	28	1.97
12199486--12199794	170	1.8	170	85	4	444	29	24	16	29	1.97
12199798--12200045	88	2.8	87	88	1	361	20	22	30	27	1.98
12201269--12201321	6	8.8	6	100	0	106	0	15	0	84	0.61
12206461--12206497	3	12.3	3	88	11	58	64	0	0	35	0.94
12206464--12206513	21	2.6	21	84	12	63	66	2	0	32	1.03
12206719--12206757	19	2.0	21	85	10	55	69	5	10	15	1.34
12206920--12206998	22	3.7	21	74	16	63	41	16	3	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12206920--12206977	22	2.6	22	81	7	64	43	17	1	37	1.59
12206956--12207011	21	2.8	19	82	10	76	37	16	8	37	1.80
12206967--12207010	21	2.1	21	100	0	88	38	13	9	38	1.77
12210964--12211128	43	3.9	42	73	9	111	30	26	19	23	1.98
12213019--12213057	19	2.1	19	90	0	60	53	25	0	20	1.45
12218342--12218371	11	2.7	11	89	0	51	10	20	46	23	1.80
12234736--12234795	20	3.0	21	76	9	54	35	0	1	63	1.05
12235360--12235401	18	2.3	19	83	4	59	64	4	0	30	1.14
12235639--12235697	23	2.6	22	76	15	57	44	3	1	50	1.28
12235639--12235707	22	3.1	22	75	17	70	44	4	1	49	1.31
12243225--12243266	21	2.0	21	95	0	75	45	19	9	26	1.80
12250594--12250720	54	2.4	54	81	7	159	22	28	24	25	1.99
12274188--12274248	31	2.0	31	86	0	86	39	11	9	39	1.75
12275304--12275359	16	3.5	16	72	16	53	66	1	3	28	1.19
12275343--12275411	30	2.3	29	80	7	77	57	1	8	31	1.38
12275411--12275507	10	9.4	10	72	10	79	62	3	2	31	1.22
12275412--12275470	32	1.9	30	86	6	82	61	3	1	33	1.23
12275613--12275683	37	1.9	38	94	5	128	26	0	5	67	1.12
12282387--12282415	6	4.8	6	100	0	58	17	34	48	0	1.47
12285432--12285459	6	4.7	6	100	0	56	35	0	0	64	0.94
12288852--12288917	29	2.3	29	82	7	73	45	6	12	36	1.66
12290640--12290694	19	2.9	19	79	12	60	58	7	3	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12291181--12291215	17	2.1	17	100	0	70	34	0	0	65	0.93
12291065--12291353	119	2.4	120	96	1	535	42	0	3	52	1.23
12291175--12291342	43	4.1	43	67	22	119	43	0	2	53	1.18
12292241--12292308	16	4.2	16	96	0	118	27	0	36	35	1.58
12292289--12292383	45	2.1	44	88	1	136	34	5	27	32	1.79
12292521--12292575	25	2.2	25	84	9	69	52	1	0	45	1.11
12292706--12292866	47	3.6	46	69	18	140	48	3	3	45	1.34
12297990--12298058	33	2.1	33	83	5	86	31	2	2	62	1.25
12298872--12298899	14	2.0	14	100	0	56	50	50	0	0	1.00
12300237--12300303	34	1.9	35	87	3	100	32	8	13	44	1.75
12300253--12300291	20	2.0	20	89	0	60	28	10	12	48	1.74
12300390--12300428	20	2.0	20	94	0	69	48	2	0	48	1.15
12300459--12300511	17	3.2	15	80	17	52	41	1	1	54	1.22
12303815--12303871	14	4.3	14	72	20	50	61	3	31	3	1.30
12303825--12303874	25	2.0	25	92	0	82	60	4	32	4	1.34
12303934--12303971	18	2.1	18	95	0	67	44	0	55	0	0.99
12303934--12303985	24	2.2	24	82	0	59	44	0	53	1	1.11
12306837--12306881	2	22.5	2	100	0	90	51	0	48	0	1.00
12307250--12307281	16	2.0	16	93	0	55	59	0	0	40	0.97
12307251--12307294	16	2.6	16	82	7	52	59	0	0	40	0.98
12307447--12307497	25	2.0	25	100	0	102	23	19	7	49	1.74
12312073--12312136	30	2.1	30	91	2	101	25	28	7	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12312085--12312131	15	3.1	16	69	12	53	25	25	6	42	1.78
12313517--12313557	9	4.4	9	84	6	55	26	0	2	70	0.99
12313524--12313614	19	5.1	17	71	19	60	31	2	3	62	1.23
12313598--12313639	11	3.9	11	79	17	52	35	0	2	61	1.09
12313598--12313639	21	2.0	21	86	9	59	35	0	2	61	1.09
12313658--12313703	21	2.2	21	88	0	65	32	0	2	65	1.05
12313678--12313743	20	3.3	19	75	12	60	28	1	3	66	1.15
12313688--12313744	20	2.8	21	76	10	64	26	1	5	66	1.22
12317167--12317285	57	2.1	57	98	0	229	30	26	12	30	1.93
12318355--12318388	11	3.1	11	100	0	68	35	11	8	44	1.72
12319596--12319635	20	2.0	20	85	0	53	50	15	10	25	1.74
12321814--12321891	28	2.6	32	72	17	85	29	17	8	43	1.80
12328334--12328392	30	2.0	30	93	0	100	57	11	3	27	1.50
12328971--12329006	18	2.0	18	94	0	63	52	5	13	27	1.63
12332194--12332461	104	2.6	105	93	1	450	18	20	30	29	1.97
12336505--12336559	8	7.0	8	78	14	53	52	5	0	41	1.24
12336503--12336559	22	2.5	22	81	16	62	54	5	0	40	1.23
12336698--12336731	7	4.9	7	88	0	50	55	0	14	29	1.40
12348503--12348580	39	2.0	39	97	0	147	24	5	24	46	1.73
12362485--12362554	35	2.0	35	100	0	140	45	14	11	28	1.79
12362879--12362939	5	11.4	5	77	18	52	19	3	0	77	0.91
12362872--12362943	18	3.8	18	78	21	85	19	2	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12362873--12362946	9	9.2	8	73	25	52	20	2	0	77	0.90
12363071--12363103	12	2.8	12	95	0	57	27	27	9	36	1.87
12364099--12364289	101	1.9	101	83	4	251	28	14	25	31	1.95
12364275--12364387	6	19.0	6	86	9	63	80	0	9	8	0.95
12364313--12364387	1	75.0	1	70	0	51	85	0	14	0	0.60
12364313--12364387	12	6.3	12	90	9	127	85	0	14	0	0.60
12364304--12364387	35	2.4	34	92	4	132	84	0	13	2	0.72
12364939--12364973	15	2.4	15	90	4	54	48	0	8	42	1.33
12366725--12366782	30	1.9	30	89	6	91	34	24	8	32	1.86
12372006--12372084	11	6.8	12	83	12	78	64	2	10	22	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211