genome.fa.s21.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  38  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11215270--11215311	7	6.0	7	100	0	84	28	0	14	57	1.38
11215956--11215995	18	2.2	18	95	0	71	22	30	7	40	1.81
11228658--11228690	16	2.0	17	88	5	50	54	15	3	27	1.55
11229790--11230019	87	2.7	85	83	3	280	32	30	17	20	1.95
11229789--11230019	43	5.4	42	82	4	255	32	30	17	19	1.95
11232698--11232743	21	2.2	21	84	7	58	23	2	50	23	1.61
11232757--11233328	143	4.0	142	85	3	686	34	11	14	39	1.82
11232757--11233328	285	2.0	286	83	4	726	34	11	14	39	1.82
11234258--11234343	40	2.2	39	79	8	93	34	36	4	24	1.76
11235399--11235520	39	3.1	39	71	3	111	22	21	20	35	1.96
11236311--11236963	113	5.7	112	76	6	479	31	19	22	26	1.97
11236292--11236971	114	5.9	113	77	4	519	31	19	22	26	1.98
11238479--11238784	147	2.1	147	82	4	359	23	15	24	36	1.93
11240296--11240331	16	2.2	16	90	0	54	30	11	2	55	1.49
11240716--11240765	13	3.8	13	89	5	66	42	8	2	48	1.44
11240705--11240774	26	2.8	26	77	12	67	41	11	1	45	1.49
11240816--11240875	31	2.0	30	83	9	77	45	10	3	41	1.54
11240892--11241011	52	2.4	49	78	16	131	39	3	3	54	1.34
11241055--11241113	13	4.5	13	87	8	75	40	10	1	47	1.47
11240535--11241198	339	2.0	339	97	0	1265	41	8	2	47	1.48
11241181--11241287	9	12.4	9	75	13	100	42	20	1	34	1.63
11241191--11241298	25	4.3	25	78	2	126	45	19	1	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11246793--11246861	21	3.3	21	81	4	86	37	18	39	4	1.71
11247357--11247495	43	3.2	44	80	9	137	25	23	18	32	1.97
11252471--11252509	20	1.9	21	84	5	53	30	10	25	33	1.89
11269375--11269400	5	5.2	5	100	0	52	38	19	19	23	1.93
11269349--11269400	26	2.0	26	81	7	61	34	15	26	23	1.94
11270040--11270099	30	2.0	30	83	3	75	40	0	38	21	1.54
11275114--11275352	112	2.1	108	77	10	280	32	14	16	35	1.90
11275273--11275441	83	2.0	86	93	3	290	36	15	11	36	1.84
11287108--11287136	14	2.0	15	93	6	51	58	0	0	41	0.98
11288197--11288243	14	3.3	14	85	5	58	44	2	10	42	1.51
11288186--11288243	29	2.0	30	86	3	82	41	1	13	43	1.55
11290108--11290136	15	1.9	15	100	0	58	20	27	10	41	1.85
11292739--11292780	15	2.7	16	82	14	52	45	0	2	52	1.13
11292730--11292771	15	2.9	15	82	10	52	47	0	0	52	1.00
11301498--11301919	141	3.0	141	94	0	738	32	5	23	38	1.78
11325677--11325722	23	2.0	23	100	0	92	17	17	17	47	1.83
11331546--11331591	18	2.6	17	81	15	58	10	2	4	82	0.89
11335392--11335417	8	3.2	8	100	0	52	38	15	23	23	1.92
11352222--11352268	24	1.9	24	86	4	67	36	0	38	25	1.56
11352986--11353272	27	10.6	27	81	8	318	42	18	17	21	1.89
11352986--11353271	81	3.5	80	86	3	378	43	18	16	21	1.89
11357818--11357889	16	4.5	16	78	0	72	41	27	9	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11357818--11357906	32	2.8	32	82	3	108	41	29	7	21	1.81
11357877--11357908	16	2.0	16	93	0	55	43	34	3	18	1.66
11358185--11358211	13	2.1	13	100	0	54	37	7	7	48	1.59
11360631--11360659	6	4.8	6	100	0	58	51	0	31	17	1.45
11378484--11378511	6	4.7	6	100	0	56	85	14	0	0	0.59
11385729--11385785	29	1.9	30	82	3	71	26	33	28	12	1.92
11388262--11388385	36	3.3	37	82	8	144	6	25	12	56	1.59
11390214--11390278	32	2.1	32	97	2	123	30	9	12	47	1.72
11390816--11390852	13	3.1	12	88	11	58	83	10	5	0	0.79
11390816--11390910	20	4.6	20	66	12	66	73	9	12	4	1.22
11393065--11393129	32	2.1	32	97	2	123	30	9	12	47	1.72
11394041--11394107	26	2.6	26	92	2	118	46	10	19	23	1.81
11394294--11394366	23	3.3	23	66	11	71	45	2	4	47	1.36
11394288--11394393	43	2.5	41	86	9	142	48	4	2	44	1.38
11395094--11395216	64	1.9	65	88	5	187	28	8	11	52	1.66
11396617--11396643	11	2.5	11	100	0	54	22	7	18	51	1.70
11396638--11396671	12	2.8	12	100	0	68	14	0	17	67	1.23
11398063--11398270	91	2.3	91	90	2	319	46	2	3	47	1.35
11398185--11398245	28	2.3	26	82	5	68	44	0	3	52	1.17
11398286--11398942	120	5.5	120	96	0	1156	42	2	5	49	1.40
11398407--11398441	18	2.0	17	88	5	52	45	0	0	54	0.99
11398527--11398560	17	2.0	17	88	11	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11398286--11398942	239	2.7	239	95	1	1163	42	2	5	49	1.40
11398286--11398937	359	1.8	360	94	1	1173	42	2	5	49	1.40
11398779--11398825	16	3.0	16	78	12	53	46	0	2	51	1.13
11398899--11398940	15	2.7	16	82	14	52	45	0	2	52	1.13
11398890--11398931	15	2.9	15	82	10	52	47	0	0	52	1.00
11403113--11403186	25	3.0	25	91	0	130	29	22	17	29	1.97
11404981--11405068	15	5.5	15	71	17	61	20	5	3	70	1.23
11419234--11419270	19	1.9	19	94	0	65	32	18	18	29	1.96
11421180--11421463	120	2.4	120	90	2	446	44	1	4	48	1.34
11421287--11421321	18	2.0	17	88	5	52	45	0	0	54	0.99
11421407--11421441	18	2.0	17	88	5	52	45	0	0	54	0.99
11421407--11421461	15	3.4	16	80	16	53	47	0	1	50	1.11
11421677--11421744	16	4.2	16	96	0	127	38	35	0	26	1.57
11428794--11428834	15	2.7	15	80	0	55	26	4	12	56	1.56
11434566--11434603	17	2.2	17	95	0	67	42	36	7	13	1.73
11439807--11439851	17	2.3	20	85	14	60	24	0	6	68	1.13
11449633--11449683	23	2.2	23	89	0	75	29	9	19	41	1.84
11451834--11451949	26	4.5	26	77	4	117	20	18	26	34	1.96
11451834--11451970	52	2.6	52	80	2	150	21	17	26	35	1.95
11451933--11451988	26	2.2	26	83	6	69	23	12	23	41	1.88
11455791--11455879	34	2.6	34	94	0	151	43	14	6	34	1.72
11479298--11479342	22	2.0	22	86	4	63	37	20	4	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11479803--11480191	130	3.0	132	86	2	559	25	26	21	26	1.99
11480187--11480524	89	3.8	89	84	1	399	26	21	24	27	1.99
11480573--11480720	44	3.4	42	80	10	147	29	23	19	27	1.98
11480607--11480950	44	7.7	44	69	13	175	29	21	18	29	1.97
11480830--11480950	42	2.8	44	79	2	138	28	23	18	28	1.98
11480612--11481092	225	2.1	225	83	3	585	29	21	18	30	1.97
11481103--11481467	44	8.2	45	81	5	329	28	21	18	32	1.97
11487726--11487758	15	2.1	16	88	5	50	63	0	6	30	1.18
11488572--11488616	21	2.0	23	87	8	67	46	13	4	35	1.63
11489660--11489868	40	5.2	40	81	2	213	35	20	30	13	1.91
11489660--11489868	80	2.6	80	82	1	249	35	20	30	13	1.91
11489673--11489869	20	9.9	20	70	0	115	35	19	30	14	1.92
11498880--11498908	14	2.1	14	100	0	58	20	13	27	37	1.91
11505963--11506204	50	4.7	50	78	5	209	26	21	26	24	2.00
11506407--11506445	20	2.0	20	90	10	62	56	5	23	15	1.59
11513643--11513754	57	1.9	60	87	5	167	42	3	8	45	1.50
11515628--11515667	21	1.9	21	89	0	62	62	10	12	15	1.54
11520595--11520894	155	1.9	158	83	6	390	23	27	11	37	1.89
11526682--11526711	10	3.0	10	95	0	51	33	0	10	56	1.32
11530299--11530354	27	2.1	27	89	0	85	35	21	25	17	1.95
11543674--11543706	16	2.1	16	100	0	66	45	6	18	30	1.73
11544620--11544657	11	3.5	11	85	0	58	15	31	10	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11553809--11553849	18	2.3	18	100	0	82	46	14	12	26	1.80
11559215--11559296	25	3.3	25	80	10	96	25	12	24	37	1.90
11571842--11572069	44	5.1	44	78	6	212	30	24	14	30	1.94
11571842--11572060	88	2.5	88	87	4	307	31	24	14	30	1.94
11583572--11583641	28	2.6	27	86	2	86	28	20	28	22	1.98
11583517--11583668	55	2.8	53	81	4	178	28	16	27	26	1.97
11583518--11583673	27	5.7	27	78	6	145	28	16	28	27	1.97
11591631--11591700	28	2.6	27	86	2	86	28	20	28	22	1.98
11591576--11591727	55	2.8	53	81	4	178	28	16	27	26	1.97
11591577--11591732	27	5.7	27	78	6	145	28	16	28	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211