genome.fa.s21.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  208  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64488646--64489017	177	2.1	174	80	7	412	35	13	13	36	1.85
64490419--64490502	30	2.8	31	80	8	93	42	3	1	52	1.26
64498937--64499087	51	3.0	51	84	0	194	27	25	17	29	1.98
64499069--64499108	21	1.9	21	89	0	62	22	30	7	40	1.81
64503889--64503948	29	2.1	29	96	0	111	26	10	21	41	1.85
64507915--64507961	3	15.7	3	95	0	85	65	2	0	31	1.04
64531638--64531683	20	2.2	22	84	7	60	39	0	8	52	1.33
64534556--64534594	4	9.0	4	84	15	51	48	0	0	51	1.00
64535769--64535815	26	2.0	24	84	16	62	38	0	2	59	1.09
64540298--64540581	59	4.7	58	67	18	150	43	2	4	49	1.36
64540291--64540581	120	2.4	122	89	4	462	43	2	4	49	1.35
64540525--64540561	19	2.0	19	85	15	51	45	0	0	54	1.00
64540726--64540816	45	2.0	45	85	2	121	37	28	6	27	1.82
64540797--64540849	16	3.2	16	89	5	88	37	35	0	26	1.57
64559772--64559840	36	1.9	36	82	5	86	63	1	7	27	1.29
64563310--64563348	14	2.7	15	84	8	53	23	10	0	66	1.22
64578871--64578924	23	2.5	21	75	6	54	37	11	9	42	1.73
64581962--64581999	20	1.9	20	88	0	58	42	2	2	52	1.29
64583107--64583142	17	2.1	17	89	0	54	33	25	0	41	1.55
64590763--64590798	12	3.0	12	83	0	54	2	22	30	44	1.67
64592323--64592369	16	3.0	16	73	17	53	38	0	2	59	1.09
64593332--64593360	3	9.7	3	100	0	58	34	34	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64607220--64607268	21	2.3	20	86	10	71	14	16	8	61	1.56
64630320--64630372	27	2.0	27	96	0	97	37	5	0	56	1.23
64630518--64630581	18	3.5	18	82	4	92	46	0	12	40	1.42
64630502--64630597	37	2.6	37	100	0	192	48	0	12	38	1.41
64630502--64630597	19	5.2	19	79	5	124	48	0	12	38	1.41
64631216--64631267	20	2.7	20	85	14	65	34	5	5	53	1.49
64631216--64631278	20	3.1	20	82	15	60	41	4	4	49	1.45
64631534--64631612	27	2.9	27	92	0	131	15	32	20	31	1.93
64631678--64631740	27	2.4	27	97	2	119	47	0	9	42	1.36
64635963--64636020	29	2.1	27	87	12	84	39	17	8	34	1.80
64641743--64641776	18	2.0	17	88	11	52	58	0	0	41	0.98
64661689--64661719	14	2.2	14	94	0	53	19	6	12	61	1.53
64664288--64664364	15	5.1	15	66	12	50	28	38	14	18	1.89
64664309--64664517	72	2.9	72	87	2	260	24	38	14	22	1.92
64664423--64664609	87	2.1	87	94	0	320	20	36	16	26	1.93
64664339--64664631	159	1.8	159	91	0	487	21	37	15	25	1.92
64664591--64664673	42	2.0	42	92	0	139	13	36	20	30	1.91
64664498--64664742	114	2.1	114	90	1	402	20	37	16	25	1.93
64664633--64664781	72	2.1	71	92	0	226	22	38	16	21	1.92
64664789--64664826	15	2.5	15	91	0	58	10	42	15	31	1.81
64664691--64664889	108	1.8	108	93	0	344	22	41	14	21	1.89
64664510--64664991	180	2.6	180	88	3	671	20	40	15	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64664804--64664961	72	2.2	72	95	0	289	23	40	14	21	1.90
64664874--64665096	93	2.4	93	91	0	383	22	42	14	20	1.89
64693727--64693765	19	2.0	20	85	14	55	33	5	5	56	1.43
64702782--64702817	18	2.0	18	100	0	72	16	11	11	61	1.57
64708578--64708603	12	2.2	12	100	0	52	50	30	0	19	1.48
64715382--64715415	18	1.9	17	88	5	50	44	17	2	35	1.64
64717757--64717798	21	2.0	21	85	0	57	19	4	7	69	1.31
64743161--64743244	31	2.8	31	78	10	77	47	14	0	38	1.44
64749686--64749884	102	1.9	106	90	4	325	37	20	16	26	1.93
64750061--64750200	69	2.1	67	82	2	163	34	17	20	27	1.95
64750979--64751423	176	2.5	177	84	6	533	39	19	13	26	1.89
64754449--64754493	24	1.9	23	90	4	72	60	0	2	37	1.09
64754860--64754916	22	2.5	22	73	15	55	45	8	8	36	1.66
64754960--64754992	3	10.7	3	93	6	57	69	0	0	30	0.88
64755667--64755711	16	2.8	16	79	0	54	77	4	4	13	1.07
64758516--64758548	11	3.0	11	95	0	57	45	0	6	48	1.27
64758828--64758856	15	1.9	15	100	0	58	62	13	0	24	1.32
64760971--64761035	11	5.6	11	70	22	53	1	13	12	72	1.20
64760969--64761011	14	3.3	14	78	15	56	0	11	13	74	1.07
64760969--64761072	25	4.2	25	78	13	108	0	11	12	75	1.11
64771690--64771745	28	2.0	28	100	0	112	28	21	10	39	1.87
64776026--64776209	98	1.9	97	84	3	244	23	12	14	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64776714--64776761	10	4.8	10	82	7	62	68	0	2	29	1.01
64776714--64776761	9	4.9	9	78	16	51	68	0	2	29	1.01
64777018--64777042	8	3.1	8	100	0	50	36	0	0	64	0.94
64777162--64777193	13	2.4	14	90	10	50	40	6	15	37	1.73
64777202--64777447	91	2.8	90	79	8	263	33	7	17	41	1.78
64780022--64780075	27	2.0	28	82	10	67	59	1	5	33	1.31
64780038--64780139	37	2.6	38	75	20	95	57	4	4	32	1.41
64780924--64780986	25	2.5	26	90	7	96	6	4	20	68	1.31
64781433--64781523	37	2.5	37	87	0	137	13	23	20	42	1.87
64781634--64781932	88	3.4	88	78	7	270	36	20	15	28	1.92
64782156--64782206	14	3.6	14	77	12	50	64	3	11	19	1.41
64782186--64782425	76	3.2	73	85	5	315	37	20	17	25	1.94
64782430--64782563	70	1.9	71	92	1	225	31	18	15	34	1.93
64782306--64782660	154	2.3	152	83	9	432	35	18	16	30	1.93
64782709--64782985	74	3.8	72	84	6	353	33	20	15	30	1.94
64782305--64783043	403	1.8	402	83	8	987	35	19	16	29	1.93
64782976--64783114	71	2.0	71	92	0	233	38	23	15	22	1.92
64782836--64783126	156	1.9	155	86	6	419	34	21	16	28	1.94
64783267--64783601	73	4.5	73	87	5	435	32	20	15	31	1.93
64783307--64783618	144	2.2	145	85	5	418	35	18	15	30	1.92
64783618--64783793	71	2.5	70	84	3	203	34	22	14	28	1.93
64792097--64792132	12	3.0	12	95	0	63	41	5	25	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64793748--64793819	28	2.5	28	76	15	67	55	2	5	36	1.38
64794646--64794706	25	2.4	25	86	7	97	3	4	21	70	1.21
64794646--64794717	25	3.0	25	86	9	96	5	4	19	70	1.23
64794646--64794720	23	3.2	23	80	3	69	5	4	18	72	1.20
64796857--64797227	91	4.1	89	76	15	377	22	14	11	51	1.74
64796858--64797300	183	2.3	192	85	7	577	22	14	10	52	1.73
64808175--64808210	4	9.0	4	93	0	54	44	25	5	25	1.75
64810698--64810769	34	2.1	34	84	0	90	18	20	20	40	1.92
64813394--64813525	44	3.0	44	92	0	210	38	16	13	31	1.88
64813234--64813727	247	2.0	248	89	2	760	40	16	15	27	1.88
64813641--64813727	44	2.0	44	93	0	147	41	14	12	31	1.84
64814696--64814737	20	2.0	21	86	13	61	47	0	14	38	1.44
64819153--64819197	24	1.9	23	90	4	72	35	2	2	60	1.22
64821804--64821843	19	2.1	18	86	9	53	42	2	15	40	1.60
64822224--64822329	49	2.1	49	81	6	115	32	21	9	36	1.86
64827167--64827199	16	2.1	16	88	11	50	63	0	3	33	1.10
64828871--64828904	16	2.0	18	88	11	54	47	5	5	41	1.52
64831204--64831616	94	4.4	93	79	9	385	35	11	16	37	1.84
64831280--64831608	91	3.6	90	81	8	310	34	11	16	37	1.85
64838556--64838585	9	3.3	9	90	0	51	0	16	0	83	0.65
64838560--64838588	13	2.1	14	93	6	51	0	13	0	86	0.58
64841470--64841509	21	1.9	21	89	0	62	15	7	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64853925--64853966	20	2.2	19	86	4	57	66	2	2	28	1.16
64855287--64855343	15	3.5	15	69	17	51	45	3	1	49	1.29
64855365--64855401	16	2.3	17	86	13	60	40	0	0	59	0.97
64858906--64858971	30	2.2	30	86	0	87	54	6	10	28	1.58
64864973--64865357	179	2.1	176	87	5	540	21	16	19	43	1.88
64866167--64866225	24	2.5	24	100	0	118	28	5	25	40	1.77
64876926--64876967	18	2.2	20	87	8	61	50	0	0	50	1.00
64876916--64876970	27	2.0	27	82	6	67	49	1	0	49	1.11
64885939--64885996	28	2.2	27	87	9	84	36	0	6	56	1.26
64889397--64889496	31	3.4	29	74	9	87	44	11	3	42	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211