genome.fa.s21.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  177  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54936497--54936964	98	4.7	98	79	4	386	24	19	22	33	1.97
54936533--54936908	147	2.6	147	78	4	407	23	19	22	34	1.96
54936790--54936941	49	3.1	49	71	7	137	22	21	22	33	1.97
54954745--54954854	23	5.1	21	74	9	87	36	24	19	20	1.95
54954784--54954854	23	3.0	24	85	6	101	38	19	18	23	1.93
54955862--54955903	18	2.3	18	88	8	59	0	16	4	78	0.91
54955865--54955907	14	3.1	14	93	6	70	0	13	6	79	0.93
54956043--54956096	28	1.9	28	88	7	83	48	1	0	50	1.11
54956062--54956100	12	3.4	11	80	13	51	46	2	0	51	1.14
54956074--54956123	21	2.5	20	76	3	55	52	2	0	46	1.12
54964569--54964692	23	5.4	23	69	19	82	32	4	8	54	1.53
54966195--54966259	25	2.6	25	95	0	112	15	23	21	40	1.91
54966327--54966411	25	3.3	25	75	12	82	18	27	22	31	1.97
54966444--54966499	25	2.2	25	87	6	78	19	28	17	33	1.95
54971463--54971544	22	3.6	22	74	11	85	50	2	1	46	1.22
54971463--54971549	23	3.8	23	71	18	74	51	2	1	44	1.21
54972648--54972710	29	2.2	29	97	0	117	57	9	4	28	1.51
54972661--54972706	15	3.1	15	70	17	51	58	10	6	23	1.55
54974886--54974922	9	4.1	9	92	0	65	45	13	10	29	1.77
54975135--54975194	30	2.0	31	86	3	86	20	36	0	43	1.52
54981282--54981322	21	2.0	21	90	0	64	29	21	29	19	1.98
54988087--54988143	10	5.2	11	74	21	57	22	35	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54988104--54988159	22	2.5	22	94	2	94	30	32	0	37	1.58
54989336--54989360	7	3.6	7	100	0	50	28	0	12	60	1.32
54989504--54990019	29	19.1	29	75	18	499	45	25	0	28	1.54
54989601--54989656	22	2.8	20	82	15	71	46	26	0	26	1.53
54989548--54990017	80	5.9	80	84	11	614	45	25	0	28	1.53
54989516--54990019	109	4.7	109	79	15	529	45	25	0	28	1.54
54989773--54989823	20	2.5	22	87	9	72	47	25	0	27	1.53
54989829--54989897	23	3.2	22	82	10	63	49	24	0	26	1.51
54989971--54990013	23	2.0	20	95	4	59	48	20	0	30	1.50
54990024--54990261	116	2.1	116	95	0	422	38	10	8	42	1.70
54990237--54990278	17	2.4	18	80	4	50	42	9	2	45	1.49
54993153--54993489	126	2.7	124	88	0	494	33	21	14	29	1.94
55001544--55001588	19	2.3	20	75	17	51	46	0	11	42	1.39
55002076--55002100	11	2.3	11	100	0	50	44	0	0	56	0.99
55011256--55011318	30	2.1	30	90	0	99	55	12	3	28	1.52
55013235--55013307	31	2.4	31	86	4	103	36	5	10	46	1.62
55030058--55030174	24	4.7	24	78	12	85	33	18	20	27	1.96
55034145--55034203	31	1.9	31	92	0	100	28	16	25	28	1.97
55034158--55034249	46	2.0	46	89	0	139	26	20	23	29	1.99
55034205--55034273	31	2.2	31	84	0	84	26	20	26	27	1.99
55036052--55036227	88	2.0	87	95	1	316	26	23	16	33	1.96
55036915--55036983	29	2.3	30	75	5	77	42	8	5	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55037308--55037391	43	2.0	43	95	0	150	32	11	13	42	1.80
55040195--55040265	37	1.9	37	100	0	142	23	9	15	50	1.74
55043638--55043729	46	2.0	46	93	0	157	36	14	10	38	1.81
55048349--55048373	4	6.2	4	100	0	50	52	24	0	24	1.48
55058555--55058633	40	2.0	40	82	5	97	16	12	34	36	1.87
55062024--55062350	146	2.2	147	82	5	385	42	7	9	40	1.65
55066661--55066713	16	3.2	17	82	15	58	30	15	3	50	1.61
55066926--55067054	33	3.8	33	70	10	100	23	29	17	30	1.97
55066960--55067158	108	1.9	105	82	7	249	24	29	17	29	1.97
55077274--55077303	15	2.0	15	93	0	51	50	0	3	46	1.18
55079221--55079258	20	1.9	20	84	10	51	60	0	2	36	1.11
55080007--55080037	15	2.1	15	93	0	53	35	0	16	48	1.46
55081150--55081333	84	2.2	84	86	3	255	52	2	20	23	1.59
55082643--55082683	20	2.0	21	90	4	66	46	9	2	41	1.50
55094620--55094652	13	2.5	13	100	0	66	78	6	0	15	0.93
55096799--55097177	128	3.0	127	87	3	544	32	19	24	23	1.98
55101654--55101714	11	5.6	11	86	1	70	21	27	0	50	1.49
55102896--55102920	7	3.6	7	100	0	50	28	0	16	56	1.41
55103553--55103596	18	2.4	18	84	0	52	18	25	9	47	1.77
55103852--55103895	21	2.1	21	86	0	61	27	47	20	4	1.69
55107214--55107483	126	2.1	126	93	0	450	26	21	19	32	1.97
55108669--55108693	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55108855--55108948	9	10.4	9	89	0	125	42	24	8	24	1.82
55109055--55109089	18	1.9	18	100	0	70	8	0	51	40	1.33
55109056--55109103	23	2.1	23	88	0	69	10	2	45	41	1.50
55110664--55110707	16	2.6	17	82	10	54	40	6	2	50	1.42
55110832--55110887	10	5.6	10	75	8	51	39	3	0	57	1.16
55110795--55110917	38	3.3	38	78	12	130	37	8	0	52	1.38
55110827--55110917	40	2.3	40	84	7	114	39	8	1	50	1.41
55124866--55124890	6	4.2	6	100	0	50	20	0	0	80	0.72
55124989--55125025	16	2.3	16	86	13	58	59	0	0	40	0.97
55130947--55131013	27	2.4	28	80	11	68	62	0	1	35	1.04
55131048--55131245	97	2.0	97	99	0	387	39	12	13	34	1.82
55133157--55133201	22	2.0	22	82	0	54	31	0	6	62	1.21
55136605--55136663	21	2.9	19	74	16	57	23	3	3	69	1.19
55136683--55136720	20	2.0	20	84	5	51	39	2	7	50	1.46
55138388--55138539	79	1.9	79	94	0	268	44	10	7	37	1.67
55145561--55145765	66	3.0	67	87	2	295	42	12	5	39	1.66
55159603--55159650	22	2.2	22	100	0	96	25	33	0	41	1.55
55159625--55159737	51	2.2	51	91	0	181	27	28	1	42	1.66
55159849--55159907	19	3.2	19	70	18	52	30	0	1	67	1.00
55160855--55160879	7	3.6	7	100	0	50	28	0	12	60	1.32
55161530--55161564	18	1.9	18	88	0	52	25	34	8	31	1.86
55161565--55161807	132	1.8	132	91	1	398	21	27	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55167049--55167472	138	3.1	137	88	3	627	45	5	7	41	1.55
55167446--55167591	75	1.9	75	93	2	249	32	10	10	45	1.73
55186378--55186434	26	2.2	27	84	9	82	33	7	10	49	1.64
55200289--55200315	12	2.2	12	100	0	54	14	0	7	77	0.97
55201155--55201210	24	2.3	25	75	9	62	33	5	12	48	1.64
55202751--55202787	9	4.1	9	89	0	56	48	13	8	29	1.71
55212414--55212464	27	1.9	26	84	11	68	21	9	13	54	1.67
55222216--55222253	19	2.0	19	90	10	60	68	2	0	28	1.03
55222820--55222874	27	2.1	26	80	12	60	21	1	3	72	1.09
55222820--55222874	17	3.2	17	76	19	53	21	1	3	72	1.09
55233856--55233929	18	4.1	18	80	0	94	12	41	5	40	1.65
55236054--55236081	13	2.2	13	100	0	56	53	14	0	32	1.41
55236499--55236575	14	5.0	15	71	20	52	42	15	9	32	1.78
55236515--55236554	20	2.0	20	90	0	62	50	12	10	27	1.72
55236503--55236569	34	1.9	35	90	3	109	46	13	8	31	1.74
55236538--55236577	14	2.9	14	84	0	53	42	17	7	32	1.77
55237860--55237907	25	1.9	25	95	0	87	18	18	14	47	1.82
55240072--55240236	42	3.9	42	77	2	152	18	23	16	41	1.90
55244372--55244415	16	2.8	16	92	0	70	31	13	31	22	1.93
55252585--55252620	17	2.1	17	94	0	63	38	0	8	52	1.32
55253272--55253330	25	2.4	24	85	2	82	59	0	5	35	1.20
55253272--55253330	24	2.4	25	83	8	77	59	0	5	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55257863--55258093	46	5.0	46	89	1	356	35	9	25	29	1.87
55257863--55258093	91	2.5	92	90	2	356	35	9	25	29	1.87
55263059--55263133	23	3.3	23	90	3	125	30	25	22	21	1.99
55271864--55271912	20	2.5	20	83	3	55	63	6	2	28	1.30
55279107--55279153	23	2.0	23	100	0	94	12	12	12	61	1.57
55285870--55285942	19	3.8	19	92	0	128	38	9	15	36	1.80
55285870--55285968	19	4.9	21	86	6	93	37	8	16	38	1.78
55288823--55288868	24	1.9	24	86	0	65	45	17	26	10	1.81
55290234--55290657	210	2.0	210	100	0	848	32	12	21	33	1.91
55291314--55291348	6	6.0	6	86	6	54	88	11	0	0	0.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211