genome.fa.s21.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  98  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30775470--30775713	129	1.9	131	90	4	397	31	4	28	34	1.77
30775687--30775742	11	5.4	11	72	12	55	46	1	1	50	1.22
30775684--30775742	21	2.9	21	89	2	84	45	1	3	49	1.28
30778111--30778169	31	1.9	31	85	0	82	40	8	10	40	1.69
30791720--30791834	40	2.9	40	82	5	128	34	20	20	24	1.96
30791886--30792123	41	5.8	40	78	5	219	21	18	28	31	1.97
30791886--30792118	81	2.9	82	80	4	231	21	18	28	32	1.96
30792553--30792593	7	5.9	7	82	0	55	21	0	48	29	1.50
30792553--30792616	21	2.9	23	84	9	80	23	0	43	32	1.54
30792545--30792632	7	12.7	7	71	17	51	21	0	42	36	1.53
30792588--30792618	15	2.1	15	93	0	53	22	0	35	41	1.54
30792982--30793032	19	2.7	18	79	8	57	74	3	3	17	1.12
30795969--30796218	86	2.9	86	83	5	274	34	9	15	41	1.79
30796230--30796314	40	2.1	40	84	4	109	30	5	14	49	1.66
30797628--30797672	20	2.2	20	84	7	56	55	4	0	40	1.20
30797722--30798049	43	7.6	43	85	1	424	26	17	28	27	1.97
30808778--30808827	6	8.2	6	79	2	55	74	2	20	4	1.08
30810594--30810657	33	1.9	33	87	0	92	39	9	10	40	1.73
30816270--30816326	30	1.9	30	92	0	96	43	12	8	35	1.73
30816490--30816530	20	2.1	20	90	4	66	56	2	0	41	1.13
30824137--30824197	24	2.5	24	78	5	59	22	19	18	39	1.92
30824211--30824260	25	2.0	25	84	7	66	30	26	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30835529--30835584	21	2.5	22	72	16	53	19	17	8	53	1.70
30838641--30838696	25	2.3	25	87	3	78	7	12	5	75	1.18
30841166--30841205	21	1.9	21	84	0	53	32	0	22	45	1.53
30841537--30841660	25	5.0	25	75	8	92	16	24	19	39	1.92
30841534--30841635	50	2.0	50	81	7	118	17	23	17	41	1.90
30841597--30841672	24	3.1	25	81	11	95	15	27	21	35	1.94
30856536--30857715	589	2.0	589	81	3	1388	30	15	21	32	1.94
30859691--30859816	25	5.0	25	74	11	107	25	22	19	33	1.97
30859694--30859816	50	2.5	50	80	5	142	25	22	18	33	1.97
30866549--30866650	35	2.9	36	80	2	109	34	22	19	23	1.97
30871365--30871488	25	5.0	25	70	12	94	25	24	16	33	1.96
30871366--30871488	50	2.5	49	81	4	149	25	24	17	33	1.96
30878526--30878930	198	2.0	198	92	0	675	37	15	18	28	1.91
30878958--30878990	16	2.0	17	88	5	50	15	0	9	75	1.03
30880929--30880989	25	2.5	24	84	10	79	37	24	22	14	1.92
30886677--30886715	19	2.1	19	95	0	69	71	12	0	15	1.14
30895722--30895768	23	2.0	23	87	0	67	44	27	6	21	1.76
30897143--30897829	352	2.0	351	90	2	1101	34	19	14	31	1.92
30904239--30904284	24	1.9	24	86	0	65	50	17	21	10	1.77
30912397--30912820	44	9.7	44	62	11	125	31	19	24	24	1.98
30912344--30913648	257	5.0	260	92	2	1991	31	20	24	24	1.98
30912348--30913654	389	3.3	389	88	3	1925	31	20	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30913290--30913619	44	7.5	44	65	13	149	30	19	23	26	1.98
30912348--30913654	132	10.0	132	88	3	1957	31	20	24	24	1.98
30915539--30915583	16	2.7	16	86	6	63	26	2	4	66	1.22
30915549--30915599	26	2.0	25	85	7	68	31	1	7	58	1.37
30926691--30926721	13	2.3	14	88	11	55	29	0	19	51	1.47
30928726--30928787	13	4.8	13	91	0	97	38	27	6	27	1.81
30929311--30929356	12	3.5	14	74	17	53	60	0	0	39	0.97
30935086--30935111	3	8.7	3	100	0	52	69	0	30	0	0.89
30946150--30946181	15	2.2	14	94	5	55	43	0	0	56	0.99
30947942--30948018	41	1.9	41	86	2	111	27	15	25	31	1.96
30949573--30950037	146	3.2	147	78	5	374	27	14	21	36	1.93
30949627--30950037	146	2.8	145	80	5	389	27	14	22	36	1.93
30952426--30952477	13	4.0	13	77	5	52	42	7	3	46	1.51
30952502--30952613	36	3.4	36	70	25	127	42	8	7	41	1.61
30952449--30952631	63	3.0	63	94	3	311	41	8	7	42	1.63
30952630--30952673	23	1.9	23	95	0	79	43	18	0	38	1.50
30952653--30952745	38	2.4	39	96	1	170	45	11	0	43	1.41
30952730--30953115	9	42.4	9	73	14	287	45	17	1	35	1.59
30952752--30952847	16	6.0	16	69	18	56	46	19	3	30	1.65
30952773--30952855	12	6.6	12	70	24	55	45	21	2	30	1.65
30952747--30952875	64	2.0	66	93	6	226	44	20	2	31	1.64
30952881--30952947	28	2.4	28	97	0	125	46	14	2	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30955753--30955809	21	2.7	21	86	0	78	36	19	38	5	1.74
30956196--30956507	42	7.4	42	85	4	362	24	22	21	32	1.98
30966371--30966413	18	2.5	17	82	14	52	30	0	23	46	1.52
30966629--30966704	23	3.3	23	88	0	116	23	19	25	31	1.98
30973468--30973512	23	2.0	23	95	0	81	24	22	22	31	1.99
30976815--30976911	27	3.6	27	75	1	86	19	30	17	31	1.95
30979958--30980066	45	2.4	45	84	0	146	22	23	14	38	1.92
30979991--30980088	45	2.2	45	84	0	124	24	20	13	41	1.88
30983924--30983993	24	2.9	24	69	2	68	28	18	18	34	1.95
30989045--30989094	20	2.5	20	81	9	57	34	0	16	50	1.45
30989663--30989825	43	3.8	43	78	7	172	28	15	25	29	1.96
30992724--30992757	17	2.0	17	100	0	68	29	0	23	47	1.52
30998671--30998714	20	2.1	21	91	4	72	22	36	20	20	1.95
31008947--31009123	57	3.1	57	90	1	266	35	21	3	39	1.70
31022948--31023034	45	1.9	45	88	4	131	34	24	17	24	1.96
31023036--31023231	51	3.9	50	78	6	189	31	28	17	22	1.97
31023043--31023227	101	1.8	101	84	5	257	31	28	17	22	1.97
31025086--31025152	25	2.7	25	81	6	75	31	19	29	19	1.96
31025086--31025203	25	4.8	24	72	16	73	30	20	27	21	1.98
31032106--31032252	40	3.7	40	83	5	120	25	27	21	25	2.00
31032152--31032332	80	2.3	80	83	9	219	27	27	20	23	1.99
31032149--31032332	40	4.6	40	81	7	196	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31039954--31040100	40	3.7	40	83	5	120	25	27	21	25	2.00
31040000--31040180	80	2.3	80	83	9	219	27	27	20	23	1.99
31039997--31040180	40	4.6	40	81	7	196	28	27	20	23	1.99
31047127--31047258	40	3.3	40	91	0	210	16	32	17	33	1.93
31047127--31047231	20	5.2	20	77	8	124	13	34	19	33	1.90
31047127--31047280	80	1.9	80	85	5	213	16	31	16	35	1.91
31048969--31048994	12	2.2	12	100	0	52	23	38	30	7	1.83
31050260--31050303	18	2.5	17	82	13	54	38	6	2	52	1.41
31050263--31050310	24	2.0	24	88	4	71	43	6	4	45	1.48
31054406--31054584	85	2.1	85	98	0	349	38	8	27	25	1.85
31055748--31055930	79	2.3	81	83	7	223	24	22	27	24	2.00
31055749--31055932	40	4.6	40	82	9	207	24	22	28	24	2.00
31055801--31055955	79	2.0	79	83	7	199	25	21	27	25	1.99
31059533--31059647	57	2.0	57	86	6	162	39	20	3	37	1.69
31061683--31061717	4	9.0	4	87	6	54	74	0	0	25	0.82
31061734--31062066	166	2.0	165	94	1	587	37	13	9	39	1.78
31064020--31064205	78	2.4	75	86	2	246	25	16	21	36	1.94
31064020--31064207	25	7.4	25	82	3	214	25	16	21	36	1.94
31074019--31074117	48	2.1	48	98	0	189	34	31	9	25	1.87
31074118--31074196	38	2.1	38	95	0	140	24	12	18	44	1.85
31076313--31076338	13	2.0	13	100	0	52	23	7	15	53	1.67
31076570--31076627	3	19.3	3	85	0	53	58	0	6	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31077238--31077299	32	1.9	32	100	0	124	29	17	0	53	1.44
31079869--31079925	28	2.0	28	83	6	71	22	47	0	29	1.52
31080811--31080852	21	2.0	22	90	4	68	50	0	0	50	1.00
31088793--31088827	6	5.7	6	93	6	61	28	0	0	71	0.86
31094205--31094263	31	1.9	31	89	3	93	35	3	3	57	1.32
31097174--31097222	17	2.8	18	71	22	50	36	6	0	57	1.24
31097726--31097781	9	6.8	8	80	9	60	37	1	0	60	1.07
31097728--31097785	8	6.9	8	75	9	53	37	1	0	60	1.07
31097728--31097783	17	3.3	16	83	11	76	35	1	0	62	1.06
31098180--31098234	28	1.9	27	82	17	67	50	5	0	43	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211