genome.fa.s21.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  33  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9663230--9663490	50	5.2	50	66	4	166	32	20	20	25	1.97
9664119--9664191	19	3.8	19	92	0	128	36	9	15	38	1.80
9664170--9664214	23	2.0	22	82	4	54	40	4	17	37	1.70
9666379--9666481	41	2.5	41	90	0	170	32	22	19	26	1.97
9666602--9666745	63	2.3	63	82	9	172	42	19	9	29	1.82
9686219--9686251	16	2.0	17	88	5	50	21	21	12	45	1.84
9687275--9687358	40	2.1	40	84	0	105	16	17	34	30	1.93
9687434--9687487	24	2.2	25	83	3	65	24	14	37	24	1.93
9687620--9687695	25	3.0	24	72	11	71	21	7	39	31	1.82
9687620--9687732	51	2.2	50	85	4	147	18	8	40	31	1.81
9687641--9687732	25	3.6	25	73	7	87	17	9	42	30	1.81
9688817--9688881	33	2.0	33	93	0	112	40	16	24	18	1.91
9689118--9689215	36	2.7	36	82	0	133	43	10	17	28	1.81
9689437--9689493	29	2.0	29	85	0	78	29	14	29	26	1.95
9692268--9692327	25	2.4	25	78	8	70	20	23	23	33	1.97
9696721--9696780	28	2.1	28	96	0	111	50	1	13	35	1.52
9698383--9698520	67	2.1	67	100	0	276	32	10	23	34	1.88
9699984--9700081	17	5.4	17	65	13	61	32	3	14	50	1.58
9699979--9700090	37	3.0	37	96	0	206	33	4	15	46	1.66
9700000--9700090	17	4.9	19	65	14	64	34	4	15	46	1.66
9700173--9700231	28	2.1	28	80	0	64	38	3	15	42	1.63
9704278--9704365	25	3.6	25	80	4	81	20	25	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9706541--9706578	2	19.0	2	100	0	76	0	50	0	50	1.00
9723116--9723149	17	2.1	16	88	5	50	50	0	0	50	1.00
9726386--9726466	31	2.7	30	76	5	74	32	6	13	48	1.67
9728681--9728796	51	2.2	52	87	1	162	50	3	3	43	1.36
9728734--9728864	68	1.9	72	85	6	189	49	3	3	43	1.36
9728791--9728882	38	2.4	37	82	13	107	50	3	2	44	1.30
9728736--9728883	68	2.1	72	80	7	162	50	4	2	42	1.35
9732024--9732157	72	1.9	72	85	6	191	31	22	18	27	1.97
9732271--9732310	18	2.2	18	95	0	71	32	15	20	32	1.93
9734472--9734533	31	2.0	31	100	0	124	29	9	6	54	1.57
9737656--9737710	28	2.0	28	82	6	69	70	0	9	20	1.13
9744016--9744089	36	2.1	36	100	0	148	27	10	16	45	1.80
9744388--9744427	21	1.9	21	89	0	62	35	2	25	37	1.69
9744464--9744504	21	2.0	21	85	0	55	41	7	9	41	1.66
9748593--9748617	6	4.2	6	100	0	50	16	32	52	0	1.44
9752435--9752462	3	9.3	3	100	0	56	32	0	0	67	0.91
9756886--9756926	17	2.5	17	80	7	50	65	2	2	29	1.18
9757197--9757235	16	2.4	17	86	4	53	38	5	2	53	1.37
9760784--9760826	21	2.1	21	87	12	63	39	0	6	53	1.28
9762325--9762359	15	2.4	15	90	4	54	48	0	8	42	1.33
9764676--9764848	40	4.4	40	81	5	192	31	22	19	26	1.97
9765828--9765907	41	2.0	41	85	11	112	45	2	1	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9772834--9772869	3	12.0	3	100	0	72	33	0	0	66	0.92
9773845--9773938	19	4.8	19	87	5	143	39	10	15	34	1.83
9773845--9773945	40	2.7	38	86	8	143	39	9	15	34	1.81
9775433--9775626	97	2.0	98	94	1	345	27	10	24	36	1.89
9781402--9781449	11	4.5	11	84	5	53	85	12	0	2	0.69
9781406--9781443	11	2.9	14	77	22	55	86	13	0	0	0.56
9782774--9783245	44	10.7	44	65	13	173	30	20	25	24	1.99
9782700--9783295	132	4.5	132	95	0	1057	30	20	25	23	1.98
9783805--9783915	19	5.7	19	82	4	150	40	9	13	36	1.78
9783806--9783912	40	2.7	40	89	2	164	41	10	13	35	1.78
9783805--9783915	59	1.9	57	85	3	150	40	9	13	36	1.78
9785395--9785589	98	2.0	98	95	0	354	27	10	25	36	1.89
9791736--9791857	37	3.3	37	86	2	147	35	23	15	25	1.94
9797394--9797418	2	12.5	2	100	0	50	0	48	0	52	1.00
9801116--9801153	18	2.1	18	100	0	76	50	18	10	21	1.76
9804103--9804171	33	2.1	33	94	0	120	43	17	18	20	1.88
9813721--9813814	9	10.4	9	82	0	89	42	25	5	26	1.76
9813720--9813797	18	4.3	18	83	0	102	43	25	5	25	1.75
9813720--9813814	36	2.6	36	85	3	120	43	25	5	26	1.76
9813721--9813814	18	5.2	18	80	2	100	42	25	5	26	1.76
9816869--9816897	4	7.2	4	100	0	58	27	0	24	48	1.51
9818778--9818842	32	2.1	32	97	2	123	47	12	9	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9822018--9822069	21	2.5	20	87	6	77	3	7	9	78	1.06
9821976--9822033	29	2.1	28	90	9	93	0	15	10	74	1.08
9822615--9822679	32	2.1	32	97	2	123	47	12	9	30	1.72
9823013--9823090	36	2.2	37	86	4	106	64	0	6	29	1.18
9826053--9826104	26	2.0	26	100	0	104	30	15	15	38	1.88
9827542--9827635	15	6.4	15	75	9	95	25	20	24	29	1.99
9827542--9827635	29	3.2	29	82	10	102	25	20	24	29	1.99
9827623--9827684	23	2.7	23	82	5	63	29	12	22	35	1.91
9827744--9828073	34	9.7	33	85	4	426	32	19	17	30	1.95
9828098--9828150	23	2.2	24	93	3	90	39	13	15	32	1.85
9829556--9829588	15	2.2	15	94	0	57	66	0	0	33	0.92
9829825--9829868	22	2.0	23	86	13	65	38	0	4	56	1.20
9829922--9829984	19	3.2	21	78	14	64	55	0	7	36	1.29
9829922--9830006	19	4.3	20	76	15	63	58	0	5	35	1.22
9829870--9830010	10	14.9	9	70	15	72	56	2	4	36	1.33
9838586--9838637	23	2.2	24	83	10	63	46	7	9	36	1.66
9840720--9840748	3	9.7	3	100	0	58	34	0	0	65	0.93
9849288--9849330	17	2.4	18	81	11	54	51	0	4	44	1.22
9850072--9850267	20	9.8	20	68	14	100	18	19	10	51	1.75
9850054--9850236	39	4.6	39	71	14	133	18	18	9	54	1.69
9850054--9850257	40	5.1	40	72	11	143	18	18	8	53	1.69
9850690--9850756	21	3.3	19	80	15	73	19	17	5	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9850677--9850789	20	5.6	20	71	14	79	17	19	9	53	1.71
9850676--9850766	40	2.2	41	82	5	114	18	19	8	52	1.71
9850692--9850779	40	2.1	42	83	4	108	19	17	7	55	1.65
9856116--9856169	25	2.2	25	83	6	65	12	9	11	66	1.44
9856915--9856944	13	2.3	13	94	0	51	30	10	10	50	1.69
9857275--9857301	6	4.5	6	100	0	54	51	0	33	14	1.43
9857278--9857331	18	3.0	18	72	0	54	38	3	42	14	1.64
9857570--9857602	11	3.1	11	91	4	50	51	0	0	48	1.00
9857849--9857912	33	2.0	30	85	8	83	64	9	7	18	1.47
9862391--9862482	41	2.2	41	81	9	107	26	20	36	16	1.93
9863424--9863505	35	2.3	36	83	6	114	7	26	15	50	1.71
9864740--9864793	21	2.5	22	85	8	85	38	18	29	12	1.88
9864740--9864803	21	3.0	21	79	4	76	40	17	28	14	1.88
9875887--9875939	13	4.1	13	79	13	56	41	13	1	43	1.54
9881555--9881625	36	2.0	34	86	5	97	33	8	28	29	1.86
9881923--9882017	48	2.0	48	93	0	163	20	15	21	43	1.88
9886742--9886813	36	2.0	35	83	2	90	36	6	26	30	1.83
9887111--9887205	48	2.0	48	91	4	156	21	16	21	41	1.91
9889163--9889189	6	4.5	6	100	0	54	29	0	0	70	0.88
9890408--9891986	81	19.5	81	78	6	1373	30	19	23	27	1.98
9890454--9891990	162	9.5	161	90	2	1872	30	19	23	27	1.98
9892732--9892823	47	2.0	47	93	0	157	21	22	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9901242--9901535	99	3.0	99	95	0	507	19	36	12	30	1.89
9904082--9904122	21	2.0	21	86	9	59	65	0	7	26	1.18
9918652--9918686	5	7.0	5	93	0	61	42	0	0	57	0.99
9919592--9919716	43	2.9	43	81	9	164	20	20	29	29	1.98
9921865--9922214	48	7.3	48	94	0	592	31	26	6	36	1.81
9921865--9922332	96	5.0	96	86	7	712	30	26	6	35	1.82
9921865--9922335	144	3.4	142	90	5	750	30	26	6	35	1.82
9922178--9922242	34	1.9	34	100	0	130	32	24	7	35	1.84
9921938--9922469	130	4.0	129	89	5	793	31	25	6	36	1.83
9922130--9922296	82	2.0	82	94	0	289	31	25	7	36	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211