genome.fa.s21.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  110  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34675601--34675892	50	5.9	50	83	0	334	22	28	20	28	1.99
34680356--34680566	40	5.3	40	87	0	269	19	27	15	36	1.93
34694597--34694657	26	2.3	26	85	0	86	37	13	11	37	1.80
34697885--34697921	11	3.4	11	96	0	65	27	43	8	21	1.80
34709313--34709347	16	2.1	17	94	5	63	11	48	0	40	1.39
34716616--34716640	13	1.9	13	100	0	50	0	24	44	32	1.54
34726403--34726462	30	2.0	30	83	6	77	55	13	1	30	1.48
34728879--34728962	25	3.3	27	75	14	88	32	25	22	20	1.98
34728892--34729057	25	6.7	25	70	18	116	36	21	24	18	1.95
34736318--34736538	111	2.0	110	99	0	433	32	22	20	24	1.98
34736934--34736995	27	2.4	25	78	10	70	48	1	1	48	1.21
34736936--34736989	27	2.0	26	85	3	72	46	1	1	50	1.23
34740117--34740147	16	1.9	16	100	0	62	35	0	6	58	1.24
34747603--34747640	13	3.0	13	82	17	53	39	0	15	44	1.47
34748370--34748414	9	4.7	10	78	15	51	62	0	0	37	0.96
34751100--34751196	49	2.0	49	85	4	133	27	8	11	52	1.65
34752673--34752699	9	3.0	9	100	0	54	33	0	0	66	0.92
34752885--34752918	18	1.9	17	88	5	50	50	0	11	38	1.39
34752979--34753211	121	1.9	121	96	0	430	43	0	4	51	1.27
34753143--34753189	18	2.6	18	90	6	69	42	0	0	57	0.98
34753140--34753256	41	2.7	40	73	20	101	43	0	1	53	1.16
34753422--34753474	16	3.3	16	94	0	88	22	33	3	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34756264--34756353	43	2.1	43	83	4	110	43	24	16	15	1.87
34756369--34756454	19	4.5	19	80	2	84	38	20	20	19	1.94
34756962--34757263	149	2.0	151	90	1	473	30	18	8	42	1.81
34761573--34761768	73	2.6	75	83	9	247	37	4	17	40	1.68
34761767--34761804	18	2.1	18	85	9	51	42	2	15	39	1.61
34764162--34764289	45	2.8	45	85	5	170	42	14	21	21	1.88
34771923--34772018	25	3.8	25	80	4	86	33	19	20	26	1.97
34776949--34777138	82	2.3	80	82	7	224	41	21	20	17	1.90
34776950--34777138	55	3.5	54	88	5	258	41	21	19	17	1.90
34776949--34777138	27	7.0	27	81	5	217	41	21	20	17	1.90
34776950--34777162	55	4.0	51	83	8	212	40	21	20	17	1.91
34777417--34777567	32	4.7	32	79	3	169	19	21	22	37	1.95
34777417--34777567	64	2.4	64	89	0	230	19	21	22	37	1.95
34783231--34783317	43	2.0	43	97	0	165	32	6	20	40	1.79
34783657--34783698	19	2.2	20	91	4	68	35	19	7	38	1.79
34784341--34784380	18	2.3	18	87	8	57	62	0	12	25	1.30
34785394--34785474	36	2.2	36	97	2	153	39	2	12	45	1.55
34787824--34787899	27	2.8	27	97	0	143	43	21	17	18	1.88
34788378--34788438	28	2.2	28	88	11	99	21	26	24	27	1.99
34797026--34797084	30	1.9	31	86	3	84	28	20	3	47	1.66
34797855--34797947	49	2.0	47	81	8	109	29	13	8	48	1.73
34797875--34797974	49	2.0	49	81	7	114	33	14	10	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34809255--34809294	20	2.0	20	85	9	55	35	10	12	42	1.76
34809397--34809440	22	1.9	24	86	9	65	43	9	2	45	1.48
34818223--34818260	17	2.2	18	85	4	51	63	5	0	31	1.17
34818961--34818994	16	2.2	15	89	5	50	55	2	0	41	1.15
34819059--34819117	30	2.0	30	83	6	75	49	10	6	33	1.63
34822850--34822876	13	2.1	13	100	0	54	29	14	29	25	1.95
34835739--34835771	16	2.1	16	94	0	57	33	0	36	30	1.58
34835750--34835859	45	2.6	44	77	12	122	34	5	28	31	1.80
34835753--34835859	44	2.6	40	73	16	117	35	5	28	30	1.80
34835981--34836035	25	2.2	25	84	9	69	52	1	0	45	1.11
34836176--34836389	88	2.4	88	83	9	279	46	4	3	45	1.38
34836210--34836349	44	3.2	43	67	16	115	47	2	2	47	1.29
34842571--34842623	27	2.0	27	88	7	81	50	7	0	41	1.30
34843565--34843606	5	8.4	5	94	0	66	35	19	26	19	1.95
34844437--34844469	13	2.5	13	90	9	50	72	6	3	18	1.18
34844851--34844891	21	2.0	21	85	0	55	56	4	7	31	1.48
34844911--34844974	30	2.0	33	82	17	82	71	3	6	18	1.20
34845476--34845551	21	3.7	21	87	7	120	36	11	10	40	1.76
34845489--34845552	19	3.3	19	93	4	101	37	14	9	39	1.78
34845756--34846189	44	9.8	44	66	9	134	26	24	18	29	1.98
34845837--34846234	132	3.0	132	92	0	654	25	25	19	29	1.98
34846680--34846745	33	2.0	33	100	0	132	36	30	18	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34853307--34853339	13	2.5	13	90	9	50	72	6	3	18	1.18
34853721--34853762	21	2.0	21	85	0	57	54	4	4	35	1.42
34854342--34854396	19	2.7	21	83	11	87	36	10	10	41	1.75
34854333--34854384	21	2.5	20	79	20	61	34	15	7	42	1.75
34856564--34856611	14	3.5	14	85	2	71	16	0	4	79	0.89
34857517--34857586	25	2.8	25	86	0	95	25	24	18	31	1.98
34857632--34857714	13	6.4	13	77	5	69	45	2	19	32	1.63
34864444--34864478	14	2.5	15	86	13	56	28	0	11	60	1.32
34873094--34873138	20	2.2	20	84	4	54	51	6	4	37	1.49
34875377--34875413	19	1.9	19	89	10	58	16	24	32	27	1.96
34881847--34881894	15	3.2	15	75	0	51	45	10	14	29	1.78
34882981--34883044	22	2.9	21	79	4	65	43	15	21	18	1.87
34883050--34883302	96	2.6	96	81	3	294	36	19	20	22	1.95
34883050--34883302	32	7.9	32	82	5	260	36	19	20	22	1.95
34883474--34883546	24	3.1	23	84	5	92	47	26	6	19	1.74
34883575--34883948	27	13.9	27	83	3	418	23	18	21	37	1.94
34885819--34886042	111	2.0	111	100	0	448	35	1	21	41	1.64
34886022--34886068	21	2.1	21	84	11	58	55	0	29	14	1.40
34891170--34891231	29	2.1	29	100	0	124	20	27	12	38	1.90
34893163--34893232	34	2.1	34	100	0	140	30	8	17	44	1.78
34893421--34893466	21	2.2	21	84	0	56	26	10	28	34	1.90
34896507--34896549	21	2.1	21	83	8	54	30	6	23	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34901946--34902035	45	2.0	45	86	2	128	34	5	27	32	1.80
34902197--34902231	18	2.0	17	88	5	52	54	0	0	45	0.99
34902155--34902227	27	2.7	27	76	8	76	52	2	0	45	1.15
34902116--34902387	144	1.9	147	94	3	487	46	3	2	47	1.34
34902341--34902375	18	2.0	17	88	5	52	54	0	0	45	0.99
34902361--34902539	55	3.1	54	64	22	128	49	7	2	41	1.43
34902356--34902543	61	3.1	61	68	14	190	49	6	2	41	1.41
34902324--34902546	120	1.9	120	97	0	419	49	6	2	42	1.40
34902461--34902495	18	2.0	17	88	5	52	60	0	0	40	0.97
34902536--34902582	17	2.9	16	78	18	53	46	2	6	44	1.40
34902555--34902588	17	2.0	17	94	0	59	50	0	5	44	1.26
34902621--34902815	93	2.1	92	88	4	286	47	4	4	44	1.41
34907191--34907230	20	2.0	20	85	9	55	37	12	5	45	1.64
34909437--34909722	50	5.7	50	84	1	342	28	22	28	20	1.99
34916603--34916788	50	3.7	50	84	1	239	26	22	29	22	1.99
34916609--34916788	99	1.8	99	86	0	261	27	21	30	21	1.98
34933096--34933149	20	2.7	20	77	8	56	64	0	3	31	1.11
34936602--34936633	16	2.1	16	94	5	57	50	6	18	25	1.70
34939862--34940081	120	1.8	120	84	0	296	25	18	23	32	1.97
34944716--34944783	16	4.2	16	78	10	68	44	4	20	30	1.71
34944716--34944776	32	1.9	32	86	0	86	44	3	22	29	1.69
34944765--34944862	49	2.0	49	86	8	135	35	5	24	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34948713--34948779	35	1.9	35	82	11	84	55	1	7	35	1.37
34965739--34965769	15	2.1	15	100	0	62	32	22	6	38	1.80
34970261--34970525	103	2.6	104	90	3	417	29	29	20	19	1.97
34970853--34970917	30	2.2	29	81	8	76	30	27	6	35	1.81
34970860--34970917	30	1.9	30	85	0	80	31	24	6	37	1.82
34977750--34978014	103	2.6	104	90	3	417	29	29	20	19	1.97
34978342--34978406	30	2.2	29	81	8	76	30	27	6	35	1.81
34978349--34978406	30	1.9	30	85	0	80	31	24	6	37	1.82
34986055--34986098	21	2.0	22	91	4	72	40	0	20	38	1.53
34993246--34993274	15	1.9	15	100	0	58	82	3	0	13	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211