genome.fa.s21.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  108  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33896246--33896343	19	4.8	19	83	9	115	39	16	7	36	1.76
33896280--33896342	21	3.1	21	88	9	103	39	14	7	38	1.75
33900840--33901016	90	2.0	88	86	2	246	33	27	16	23	1.96
33900833--33901020	45	4.2	45	83	5	204	32	27	17	22	1.96
33907311--33907488	28	6.5	28	90	7	269	25	14	29	30	1.95
33907311--33907488	55	3.3	55	89	6	265	25	14	29	30	1.95
33913054--33913105	23	2.5	20	82	17	77	55	7	19	17	1.65
33913058--33913102	23	2.0	23	100	0	90	53	8	17	20	1.70
33915381--33915531	27	5.6	27	95	1	248	26	13	29	30	1.94
33915381--33915531	82	1.9	81	91	1	248	26	13	29	30	1.94
33915381--33915531	55	2.8	54	93	1	248	26	13	29	30	1.94
33918169--33918218	23	2.1	23	85	3	64	42	18	22	18	1.90
33920465--33920500	19	1.9	18	88	5	54	22	0	2	75	0.94
33934681--33934734	24	2.2	24	93	0	90	31	18	16	33	1.93
33936365--33936407	17	2.5	17	88	0	68	30	32	16	20	1.95
33939433--33939461	11	2.7	11	94	5	51	31	20	10	37	1.86
33942508--33942601	25	3.7	25	84	5	109	24	18	23	34	1.96
33945876--33945909	17	2.0	17	88	0	50	23	8	0	67	1.18
33948103--33948149	24	1.9	25	82	4	60	42	4	25	27	1.73
33950756--33950801	23	2.0	23	95	0	83	34	15	17	32	1.91
33951266--33951300	18	1.9	18	88	0	52	20	5	11	62	1.48
33956188--33957166	384	2.5	384	83	6	1168	28	12	18	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33958870--33958930	30	2.0	30	90	0	95	29	27	21	21	1.98
33959271--33959314	17	2.6	16	85	7	61	40	2	0	56	1.11
33959256--33959312	22	2.7	20	77	17	60	42	1	1	54	1.21
33963296--33963372	29	2.7	29	87	0	109	27	24	9	38	1.85
33965860--33965889	14	2.1	14	93	0	51	16	43	0	40	1.48
33968359--33968402	22	2.0	21	83	12	54	40	0	0	59	0.98
33979759--33979791	17	1.9	17	88	11	50	3	33	6	57	1.38
33984086--33984262	50	3.4	50	83	4	183	22	29	21	26	1.99
33985049--33985102	28	1.9	28	96	0	99	38	16	20	24	1.92
33985556--33985680	42	3.0	42	84	6	164	14	19	16	50	1.78
33988112--33988185	38	1.9	38	83	5	96	32	4	33	29	1.76
33997650--33997683	16	2.2	15	89	5	50	44	8	2	44	1.50
34000416--34000520	20	5.2	20	72	0	84	11	33	19	36	1.87
34003992--34004233	50	4.7	50	77	4	173	24	26	20	28	1.99
34006740--34006824	43	2.0	43	85	0	116	29	23	2	44	1.66
34007592--34007620	3	9.7	3	100	0	58	31	0	0	68	0.89
34016804--34016857	26	2.1	26	92	0	90	37	29	12	20	1.90
34016816--34016857	14	3.1	14	75	25	54	38	28	11	21	1.89
34022554--34022587	17	2.0	17	100	0	68	58	5	11	23	1.55
34032368--34032409	20	2.1	20	100	0	84	28	21	19	30	1.97
34033317--34033354	20	1.9	20	89	10	60	60	5	0	34	1.19
34045002--34045060	29	2.0	29	100	0	118	20	20	16	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34046399--34046432	17	2.0	17	94	0	59	58	5	8	26	1.51
34046889--34046941	18	2.9	18	75	10	54	26	30	3	39	1.74
34052229--34052275	22	2.3	19	85	14	58	44	2	0	53	1.12
34052231--34052272	16	2.7	15	79	20	50	45	2	0	52	1.13
34060668--34060711	22	2.0	21	83	12	54	40	0	0	59	0.98
34070118--34070151	17	2.0	17	94	0	59	58	8	11	20	1.59
34083787--34083850	24	2.8	22	72	9	74	50	21	10	17	1.77
34084136--34084217	25	3.3	24	81	6	83	23	21	24	30	1.99
34096431--34096621	50	3.7	50	84	5	222	24	20	29	24	1.99
34102113--34102360	101	2.5	101	91	1	390	28	25	14	31	1.95
34109344--34109428	27	3.2	26	83	6	107	44	8	24	22	1.80
34116973--34116997	10	2.5	10	100	0	50	72	8	0	20	1.10
34121679--34121739	26	2.4	26	86	2	79	39	14	11	34	1.82
34131752--34131799	10	4.6	10	80	10	51	60	4	0	35	1.16
34137426--34137464	17	2.3	17	86	0	51	7	20	35	35	1.81
34140234--34140496	40	6.6	40	87	3	316	26	28	20	24	1.99
34148010--34148160	27	5.6	27	81	7	171	26	15	28	29	1.96
34148011--34148160	82	1.8	81	87	4	221	26	15	28	30	1.96
34154348--34154425	27	2.9	28	83	11	101	39	20	16	23	1.92
34155783--34155864	33	2.5	33	82	4	94	26	25	14	32	1.95
34155775--34156000	101	2.2	101	88	1	319	27	24	15	32	1.95
34159628--34159840	101	2.1	101	87	1	302	31	22	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34162688--34162717	15	2.0	15	93	0	51	56	10	6	26	1.57
34164435--34164593	79	2.0	79	100	0	318	54	5	13	26	1.60
34164629--34165015	191	2.0	191	96	0	711	36	16	9	38	1.81
34165743--34165772	14	2.1	14	93	0	51	40	0	43	16	1.48
34166076--34166115	14	2.8	15	85	11	57	27	20	22	30	1.98
34167787--34167914	35	3.6	35	89	1	193	21	9	27	42	1.83
34171420--34171635	75	2.9	73	87	6	301	20	38	3	37	1.69
34171592--34171635	21	2.0	22	86	4	63	25	38	0	36	1.56
34176229--34176389	43	3.8	42	82	6	191	32	21	18	27	1.96
34176228--34176385	86	1.8	86	85	5	221	32	21	18	27	1.96
34179219--34179260	18	2.3	18	88	8	59	14	38	9	38	1.78
34182193--34182222	15	2.0	15	93	0	51	56	10	6	26	1.57
34183464--34183491	14	2.0	14	100	0	56	28	21	7	42	1.79
34184994--34185082	45	2.0	45	93	0	151	32	21	17	28	1.96
34185101--34185279	51	3.5	50	76	4	189	31	27	16	24	1.96
34185103--34185309	101	2.0	101	82	4	247	30	28	15	25	1.96
34190384--34190570	51	3.7	50	79	4	214	31	27	16	24	1.96
34190383--34190566	101	1.8	101	89	3	289	32	27	16	24	1.96
34193515--34193594	39	2.1	39	100	0	160	33	12	7	46	1.70
34196891--34196978	37	2.3	38	94	5	153	47	2	13	36	1.56
34197805--34197862	9	6.4	9	89	0	89	41	22	10	25	1.85
34197805--34197862	18	3.2	18	95	0	98	41	22	10	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34197965--34197989	13	1.9	13	100	0	50	12	0	48	40	1.40
34201060--34201100	20	2.0	20	100	0	82	43	0	29	26	1.55
34201368--34201530	83	2.0	84	91	3	267	30	27	16	25	1.97
34201368--34201521	43	3.7	43	88	6	226	31	28	16	23	1.96
34201542--34201575	16	2.1	16	88	0	50	55	8	0	35	1.31
34203381--34203867	112	4.4	106	87	7	545	38	14	15	31	1.88
34203381--34203889	113	4.6	113	87	7	697	39	13	15	31	1.87
34203674--34203933	113	2.5	102	85	9	310	43	13	15	28	1.83
34204182--34204222	19	2.2	18	86	4	55	36	0	0	63	0.95
34205241--34205705	193	2.4	195	79	9	475	43	18	9	28	1.82
34207115--34207268	7	21.6	7	73	10	80	42	35	0	22	1.54
34207144--34207325	21	8.6	20	67	17	73	43	32	0	23	1.58
34207114--34207330	14	15.3	14	69	13	113	43	32	0	23	1.58
34207616--34207939	40	8.2	40	73	10	234	28	21	18	31	1.97
34207492--34207928	197	2.2	196	84	3	576	29	21	18	31	1.97
34208675--34208711	14	2.8	13	88	8	56	54	0	2	43	1.14
34208675--34208717	6	6.7	6	87	10	50	53	2	2	41	1.26
34213174--34213334	84	1.9	84	97	0	304	44	8	29	18	1.78
34215478--34215560	41	2.0	42	83	6	107	50	1	21	26	1.56
34220430--34220481	6	8.7	6	81	8	52	80	0	13	5	0.88
34220430--34220469	15	2.7	15	81	14	55	82	0	10	7	0.84
34243990--34244059	35	2.0	35	85	0	95	35	12	17	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34248813--34248880	25	2.7	25	83	0	82	27	20	19	32	1.97
34249120--34249153	17	2.1	17	88	5	52	52	8	0	38	1.33
34251814--34252074	61	4.3	61	80	3	301	28	26	13	32	1.93
34251832--34252067	122	1.9	122	86	1	339	28	27	11	32	1.92
34253518--34253557	20	2.0	20	100	0	80	30	25	5	40	1.77
34253575--34253619	25	2.0	23	83	16	58	20	24	31	24	1.98
34255484--34256163	341	2.0	341	97	0	1279	32	16	16	34	1.91
34261684--34261744	29	2.1	30	84	9	81	45	0	32	21	1.52
34265099--34265152	25	2.1	26	82	3	65	40	0	16	42	1.48
34270712--34270750	3	13.0	3	94	0	69	64	0	2	33	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211