genome.fa.s21.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  178  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55291316--55291348	11	3.1	11	86	4	50	90	9	0	0	0.44
55293112--55293432	44	7.3	44	63	17	130	30	18	23	28	1.97
55293030--55293793	132	5.8	132	91	1	1210	29	17	23	29	1.97
55294117--55294209	19	4.9	19	89	0	132	39	9	12	37	1.77
55294521--55294565	21	2.1	21	84	8	56	22	6	0	71	1.09
55298013--55299698	132	12.8	132	93	0	2773	27	23	18	30	1.97
55299748--55299885	44	3.2	43	69	11	136	25	26	23	25	2.00
55299696--55299931	88	2.7	88	94	0	418	23	22	25	27	2.00
55302033--55302069	8	4.8	8	81	18	51	13	0	2	83	0.74
55302035--55302075	7	5.6	7	86	11	55	12	0	4	82	0.81
55302043--55302100	30	2.0	27	77	12	53	10	0	10	79	0.94
55302029--55302075	23	2.0	24	91	4	78	12	0	6	80	0.88
55302009--55302091	23	3.7	22	72	19	64	10	2	8	78	1.05
55302021--55302099	16	5.3	15	80	11	90	10	1	10	78	1.02
55302013--55302099	44	2.0	45	82	11	108	10	2	9	78	1.06
55304126--55304168	19	2.3	17	78	21	50	41	13	23	20	1.88
55313884--55313921	18	2.1	18	95	0	67	0	55	0	44	0.99
55313981--55314030	25	2.0	25	88	0	73	4	30	4	62	1.32
55317363--55317415	15	3.2	15	80	17	52	54	1	1	41	1.22
55317446--55317484	20	2.0	20	94	0	69	48	0	2	48	1.15
55317583--55317622	20	2.0	20	90	0	62	50	12	10	27	1.72
55317571--55317637	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55317606--55317645	14	2.9	14	84	0	53	42	17	7	32	1.77
55317725--55317753	13	2.1	14	93	6	51	31	13	17	37	1.89
55319411--55319478	31	2.2	31	89	0	100	41	5	16	36	1.72
55322746--55322849	34	3.0	34	79	14	97	64	4	4	25	1.33
55322779--55322830	3	17.0	3	88	4	77	63	1	1	32	1.16
55325643--55326155	89	5.8	89	83	1	600	22	23	23	31	1.99
55326360--55326391	16	2.0	16	100	0	64	31	6	18	43	1.75
55327061--55327347	93	3.0	93	89	2	430	48	7	16	27	1.73
55332985--55333063	3	26.0	3	92	2	95	58	0	7	34	1.27
55335794--55335824	13	2.4	13	100	0	62	54	19	12	12	1.70
55335919--55336109	41	4.7	41	80	1	204	25	21	21	30	1.99
55335901--55336109	82	2.6	81	83	2	249	25	20	22	32	1.98
55336420--55336580	43	3.7	43	82	6	166	21	20	29	28	1.98
55336420--55336580	86	1.9	85	81	10	193	21	20	29	28	1.98
55348047--55348097	25	2.0	25	92	0	84	45	0	0	54	0.99
55350379--55350421	16	2.7	16	85	7	52	37	2	0	60	1.10
55355217--55355269	22	2.5	21	84	3	61	73	5	3	16	1.17
55357577--55357605	13	2.2	13	100	0	58	13	0	37	48	1.43
55362407--55362440	13	2.5	14	85	9	52	14	14	17	52	1.74
55366987--55367064	19	3.7	21	84	14	99	38	8	15	37	1.79
55367267--55367311	23	2.0	23	86	0	63	22	0	11	66	1.22
55368610--55368641	7	4.6	7	100	0	64	71	0	15	12	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55371537--55371562	12	2.2	12	100	0	52	26	19	0	53	1.45
55376513--55376560	18	2.7	18	78	12	53	43	0	12	43	1.42
55376886--55377123	41	5.8	41	96	1	433	26	19	23	31	1.98
55376886--55377165	123	2.3	123	90	3	440	27	19	23	29	1.98
55384549--55384786	41	5.8	41	97	1	442	26	19	23	30	1.98
55384549--55384828	123	2.3	123	90	3	449	27	20	23	29	1.99
55391767--55392066	42	7.3	42	77	8	242	23	19	25	33	1.97
55391791--55392104	82	3.9	82	86	7	353	23	20	24	31	1.98
55391791--55392104	40	7.7	40	81	7	337	23	20	24	31	1.98
55391786--55392104	122	2.6	122	89	2	469	23	20	24	31	1.98
55392193--55392409	99	2.2	99	88	0	308	27	19	21	31	1.97
55392133--55392409	100	2.8	100	83	1	342	26	19	23	31	1.98
55392133--55392513	50	7.6	50	68	8	184	26	19	23	30	1.98
55392493--55392531	18	2.2	18	100	0	78	23	23	28	25	1.99
55392559--55392739	50	3.6	50	68	3	139	26	20	22	30	1.98
55392511--55392754	100	2.4	100	86	1	337	25	23	20	30	1.99
55399189--55399380	101	1.9	101	87	3	273	32	5	12	48	1.64
55402232--55402281	26	1.9	26	83	0	64	36	0	6	58	1.23
55402240--55402292	18	3.0	17	75	8	52	33	0	5	60	1.20
55402545--55402570	6	4.3	6	100	0	52	46	0	0	53	1.00
55407725--55407772	21	2.3	21	78	7	53	66	4	0	29	1.10
55408951--55409012	20	3.0	20	73	19	56	54	0	8	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55416134--55416694	302	1.9	302	87	0	827	28	12	25	32	1.93
55418226--55418263	13	2.9	14	84	11	53	18	13	15	52	1.74
55437007--55437045	17	2.4	16	84	16	53	15	5	0	79	0.90
55437830--55437874	16	2.7	16	89	6	63	46	11	0	42	1.39
55440198--55440252	28	1.9	29	92	3	94	32	7	12	47	1.69
55440395--55440479	31	2.8	30	78	5	100	40	12	11	35	1.80
55450197--55450224	5	5.6	5	100	0	56	0	17	0	82	0.68
55452344--55452378	7	5.0	7	89	0	52	65	2	0	31	1.07
55459792--55459838	16	2.8	17	87	12	62	76	0	2	21	0.89
55470241--55470287	24	2.0	24	100	0	94	44	21	17	17	1.86
55482693--55482748	23	2.3	26	87	9	82	44	1	1	51	1.22
55484635--55484681	23	2.0	23	92	8	78	57	2	0	40	1.11
55492080--55492135	22	2.6	22	83	8	62	23	0	37	39	1.55
55492292--55492343	14	3.7	14	81	0	59	23	0	30	46	1.53
55492292--55492401	14	7.7	14	71	15	55	26	1	26	45	1.64
55493919--55493952	12	2.7	13	86	4	52	23	5	8	61	1.47
55494452--55494521	23	3.0	23	79	4	95	18	14	24	42	1.87
55494589--55494631	14	3.3	14	78	18	56	34	6	11	46	1.67
55498500--55498655	43	3.6	43	86	1	215	22	12	27	37	1.90
55498476--55498652	86	2.1	86	84	7	227	25	10	25	37	1.88
55501526--55501570	19	2.3	19	84	3	54	57	2	0	40	1.11
55504402--55504435	17	1.9	18	88	5	52	35	14	8	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55506809--55506848	21	1.9	21	85	10	55	25	5	5	65	1.34
55511528--55511625	28	3.5	28	94	0	160	29	12	26	31	1.92
55512361--55513043	70	9.7	70	90	2	1048	24	13	19	43	1.86
55515552--55515800	50	4.8	50	85	4	284	20	29	24	26	1.99
55515551--55515800	100	2.4	104	88	6	357	20	29	24	26	1.99
55515895--55515926	13	2.5	13	94	0	55	56	12	0	31	1.37
55516138--55516195	30	1.9	30	89	0	89	31	24	3	41	1.71
55523151--55523399	50	4.8	50	85	4	284	20	29	24	26	1.99
55523150--55523399	100	2.4	104	88	6	357	20	29	24	26	1.99
55523494--55523525	13	2.5	13	94	0	55	56	12	0	31	1.37
55523737--55523794	30	1.9	30	89	0	89	31	24	3	41	1.71
55524871--55524914	24	1.9	24	86	9	65	29	34	0	36	1.58
55538712--55538736	13	1.9	13	100	0	50	64	0	0	36	0.94
55538704--55538748	22	2.0	22	83	8	56	57	0	0	42	0.98
55538846--55538928	13	6.2	15	71	20	60	51	1	1	45	1.16
55539663--55539704	21	2.0	21	100	0	84	28	14	9	47	1.75
55540922--55541087	42	4.1	41	78	9	162	39	20	16	23	1.92
55540923--55541087	84	2.0	79	83	8	206	39	20	16	23	1.92
55545321--55545430	3	36.7	3	74	3	96	33	5	0	60	1.26
55545305--55545408	36	2.9	34	80	11	109	32	5	0	60	1.27
55546090--55546408	110	2.9	109	85	4	412	32	15	18	32	1.93
55548355--55548640	50	5.7	50	86	0	401	19	30	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55548981--55549038	30	1.9	30	89	6	91	27	24	5	43	1.75
55553884--55553935	6	8.7	6	93	0	50	67	5	11	15	1.40
55553902--55553935	6	5.7	6	100	0	68	70	0	14	14	1.17
55554937--55555009	7	10.9	7	94	5	125	71	0	13	15	1.15
55554938--55555007	13	5.3	13	90	10	115	71	0	14	14	1.15
55554937--55555009	20	3.7	20	94	5	130	71	0	13	15	1.15
55556258--55556809	44	12.7	44	70	11	253	30	19	22	27	1.98
55556264--55556859	218	2.7	219	92	1	1000	30	19	22	27	1.98
55556611--55557083	175	2.7	173	78	5	398	31	19	22	26	1.98
55562694--55562808	1	115.0	1	68	0	68	84	7	6	1	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211