genome.fa.s21.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  150  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47240500--47240609	53	2.1	54	85	1	150	29	21	9	40	1.84
47252264--47252365	22	4.3	24	76	15	97	39	17	24	18	1.92
47253193--47253224	16	1.9	17	93	6	57	3	18	3	75	1.08
47268395--47268438	19	2.4	19	85	11	56	9	27	4	59	1.48
47272744--47272774	16	1.9	16	93	0	53	67	0	0	32	0.91
47274346--47274494	40	3.7	40	79	3	172	24	20	24	30	1.99
47274646--47275913	132	9.6	132	95	0	2249	29	25	16	27	1.97
47274646--47275913	394	3.2	394	97	0	2331	29	25	16	27	1.97
47287933--47287963	16	1.9	16	93	0	53	67	0	0	32	0.91
47292134--47292362	68	3.4	68	79	0	242	26	20	13	38	1.91
47293435--47293528	49	1.9	49	86	0	134	24	25	7	42	1.80
47292710--47294495	892	2.0	893	90	1	2848	35	22	12	29	1.91
47295846--47295931	43	2.0	43	86	4	120	25	19	0	54	1.44
47299706--47299743	19	2.0	20	89	5	60	7	7	5	78	1.07
47303000--47303085	42	2.0	42	88	4	129	43	23	12	20	1.86
47309923--47310021	40	2.5	40	88	3	146	36	19	28	16	1.93
47309945--47310002	20	2.9	20	74	7	64	31	18	32	17	1.94
47309960--47310021	20	3.1	20	72	9	63	35	19	32	12	1.90
47312472--47312517	21	2.2	21	85	11	60	52	4	2	41	1.33
47317450--47317516	33	2.0	33	100	0	134	37	17	8	35	1.82
47323082--47323186	26	4.0	26	86	0	129	20	20	22	37	1.95
47352457--47352934	5	95.6	5	97	0	740	20	4	19	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47361195--47361229	18	1.9	18	94	0	61	28	5	25	40	1.78
47361403--47361427	5	5.0	5	100	0	50	40	0	0	60	0.97
47364791--47364834	21	2.0	21	82	13	52	31	2	2	63	1.19
47366629--47366911	149	1.9	149	86	0	404	42	14	12	31	1.82
47367663--47367755	28	3.4	28	83	5	118	30	18	24	26	1.98
47377422--47377463	17	2.5	17	85	11	59	47	0	9	42	1.36
47387714--47387752	12	3.2	12	86	13	62	82	0	7	10	0.86
47398864--47399064	31	6.5	31	85	1	251	31	8	17	42	1.79
47398864--47399070	92	2.2	93	85	1	238	31	8	17	42	1.78
47399188--47399299	43	2.6	43	87	7	163	24	15	27	33	1.95
47401661--47401772	45	2.5	44	81	7	127	38	12	22	26	1.90
47404864--47404908	22	2.0	22	100	0	90	17	17	35	28	1.93
47404892--47404989	48	2.0	48	100	0	196	16	20	31	31	1.95
47405181--47405207	13	2.1	13	100	0	54	55	14	14	14	1.70
47407386--47407566	61	2.9	61	81	6	195	42	16	3	37	1.65
47408647--47408770	60	2.0	61	82	1	151	37	6	16	40	1.74
47413045--47413192	43	3.4	43	92	0	260	27	33	17	21	1.96
47413049--47413212	86	1.9	86	89	0	256	30	31	17	20	1.96
47416912--47417018	40	2.7	40	84	5	119	25	27	20	27	1.99
47416918--47417085	80	2.1	80	81	5	189	27	27	19	25	1.99
47416958--47417131	80	2.2	80	83	10	214	28	27	20	24	1.99
47416955--47417085	40	3.3	40	88	2	192	29	27	19	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47420156--47420286	40	3.3	40	85	2	183	23	18	27	30	1.98
47424346--47424535	41	4.6	41	91	0	308	29	27	22	20	1.99
47424796--47424864	23	3.0	23	91	0	111	39	2	14	43	1.60
47429510--47429568	25	2.4	24	77	5	64	18	23	16	40	1.91
47430262--47430298	15	2.6	14	87	8	56	8	8	8	75	1.19
47430264--47430296	15	2.2	15	94	0	57	6	9	6	78	1.08
47434160--47434199	19	2.0	21	85	9	57	42	10	10	37	1.72
47434408--47434457	20	2.6	20	81	15	61	28	20	8	44	1.79
47436180--47436235	29	1.9	29	100	0	112	33	21	1	42	1.63
47437909--47437950	22	1.9	22	90	0	66	14	14	26	45	1.83
47438032--47438138	43	2.5	43	89	3	153	29	27	21	21	1.98
47440608--47440637	15	2.0	15	93	0	51	43	10	0	46	1.37
47442295--47442568	149	1.8	148	94	2	487	32	15	16	35	1.90
47441950--47442765	274	2.9	277	90	3	1259	31	16	15	36	1.90
47442442--47442693	125	2.0	126	97	0	479	32	15	16	35	1.90
47442731--47442924	107	1.8	103	86	8	275	24	11	11	52	1.72
47442839--47443004	83	2.0	82	89	5	255	22	12	12	52	1.72
47443480--47443528	14	3.4	14	88	5	71	34	38	2	24	1.67
47443487--47443529	15	2.9	15	89	3	61	37	37	2	23	1.68
47443622--47443676	25	2.2	25	75	12	60	21	9	7	61	1.50
47443681--47443833	72	2.1	72	88	0	225	27	27	17	27	1.98
47443737--47444385	114	5.7	114	90	0	960	26	27	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47449177--47449217	20	2.0	20	85	4	55	36	2	7	53	1.42
47449277--47449311	18	2.0	17	88	5	52	45	0	0	54	0.99
47449201--47449448	120	2.1	120	100	0	496	43	2	5	48	1.38
47449397--47449431	18	2.0	17	88	5	52	45	0	0	54	0.99
47449667--47449734	16	4.2	16	96	0	127	38	35	0	26	1.57
47453505--47453623	60	2.0	59	82	9	143	31	21	9	37	1.85
47477290--47477341	19	2.7	19	90	0	86	36	11	13	38	1.81
47477335--47477380	21	2.1	23	84	8	60	36	4	15	43	1.66
47477570--47477614	23	2.0	23	81	0	54	22	0	15	62	1.33
47478049--47478091	23	1.9	22	90	4	68	34	6	2	55	1.39
47480814--47480857	11	3.9	11	79	5	52	36	0	4	59	1.18
47484436--47484545	37	2.9	38	79	8	125	31	24	20	23	1.98
47487768--47487847	39	2.1	39	100	0	160	35	23	7	33	1.83
47493951--47493990	17	2.4	17	88	12	64	27	2	0	70	1.01
47497881--47497946	6	11.0	6	82	6	62	45	6	31	16	1.72
47497855--47497946	12	7.7	12	74	13	64	45	5	29	19	1.72
47497855--47497946	36	2.6	36	82	3	105	45	5	29	19	1.72
47498254--47498387	70	1.9	70	93	0	232	41	8	4	45	1.56
47499940--47499988	20	2.3	21	80	16	57	40	0	2	57	1.10
47499959--47500027	25	2.8	24	72	14	59	33	0	1	65	1.02
47510314--47510375	28	2.4	25	84	12	81	17	17	16	48	1.82
47511930--47511995	4	16.2	4	96	3	123	27	0	24	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47512667--47512692	7	3.7	7	100	0	52	76	0	11	11	1.01
47512962--47513049	43	2.0	43	86	0	122	31	14	12	40	1.84
47514186--47514211	11	2.4	11	100	0	52	23	7	11	57	1.59
47515088--47515114	14	1.9	14	100	0	54	51	18	7	22	1.70
47517337--47517369	2	16.5	2	100	0	66	51	0	48	0	1.00
47517626--47517687	22	2.8	22	85	2	79	50	1	1	46	1.20
47517663--47517702	16	2.5	16	91	0	62	47	2	7	42	1.45
47517713--47517852	59	2.4	59	98	0	271	39	4	9	47	1.55
47517834--47517861	9	3.1	9	100	0	56	32	0	10	57	1.33
47522111--47522162	20	2.6	21	79	11	56	57	1	0	40	1.10
47527285--47527383	23	4.3	23	94	0	171	21	21	26	31	1.98
47534653--47534751	23	4.3	23	94	0	171	21	21	26	31	1.98
47536044--47536231	50	3.7	50	78	1	178	26	18	26	29	1.98
47538431--47538466	15	2.5	14	86	8	54	44	8	0	47	1.33
47541904--47541935	16	1.9	17	93	6	57	37	21	0	40	1.54
47546969--47547000	15	2.1	15	94	0	55	15	6	9	68	1.36
47548584--47548660	37	2.1	36	83	11	95	40	5	2	51	1.38
47548649--47548689	18	2.1	20	86	13	59	29	4	7	58	1.46
47550561--47550595	3	11.7	3	93	0	61	71	0	28	0	0.86
47550558--47550597	9	4.4	9	93	0	62	75	0	25	0	0.81
47555196--47555227	11	2.9	11	95	0	55	9	9	6	75	1.20
47569142--47569173	16	2.0	16	100	0	64	18	31	18	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47572813--47572855	17	2.6	17	82	14	54	18	6	0	74	1.04
47573201--47573267	29	2.3	29	82	5	82	20	16	20	41	1.90
47574071--47574188	41	2.9	38	79	15	98	19	31	27	22	1.98
47580867--47580900	16	2.1	16	94	0	59	29	0	32	38	1.58
47581136--47581170	18	2.0	17	88	5	52	54	0	0	45	0.99
47581030--47581336	157	1.9	158	93	1	528	45	2	5	46	1.40
47581309--47581620	38	8.4	37	64	21	127	52	4	1	42	1.29
47581294--47581449	18	8.0	18	67	24	77	53	1	1	42	1.19
47581309--47581509	61	3.3	61	72	14	200	52	3	1	42	1.29
47581264--47581790	120	4.5	117	83	11	658	52	3	1	42	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211