genome.fa.s21.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  141  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44501398--44501493	21	4.4	21	76	7	84	3	40	18	37	1.67
44506948--44507188	25	9.2	25	70	19	127	38	0	18	42	1.56
44506948--44507293	9	38.6	9	66	18	152	36	1	17	44	1.59
44507017--44507068	19	2.8	19	85	2	70	32	1	19	46	1.61
44507014--44507185	46	3.7	46	69	16	129	37	1	18	43	1.57
44507001--44507218	16	13.8	16	70	18	109	35	0	17	45	1.55
44507106--44507293	79	2.3	80	80	6	202	34	2	17	45	1.63
44509404--44509934	261	2.0	261	95	0	945	34	21	17	27	1.95
44509800--44510034	115	2.0	115	92	0	389	34	20	16	29	1.94
44510660--44510709	20	2.5	21	83	6	68	48	38	0	14	1.44
44510859--44510927	7	9.9	7	78	7	52	36	44	2	15	1.62
44510865--44510907	23	1.9	22	85	4	59	34	46	2	16	1.60
44511284--44511427	75	1.9	77	84	5	195	29	25	25	20	1.99
44511527--44511697	72	2.4	72	81	2	191	26	23	22	26	2.00
44516762--44516907	41	3.6	41	94	1	249	19	30	20	30	1.97
44516755--44516932	82	2.2	82	81	5	216	24	28	19	27	1.99
44518606--44518664	28	2.0	31	83	9	79	50	5	0	44	1.24
44524247--44524341	33	2.9	34	72	12	108	20	43	12	24	1.86
44524607--44524741	48	2.8	48	93	3	227	48	13	8	30	1.71
44528889--44528980	46	2.0	46	93	4	161	26	4	30	39	1.75
44528889--44528997	46	2.5	44	85	11	147	28	3	31	36	1.75
44529142--44529178	18	2.2	16	90	9	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44529209--44529281	23	3.0	23	70	18	65	47	6	2	42	1.44
44529190--44529291	51	1.9	52	86	9	145	46	7	2	43	1.48
44529284--44529347	32	2.0	32	81	0	74	48	3	0	48	1.17
44530715--44530818	49	2.1	49	89	0	154	50	10	8	30	1.67
44532515--44532580	28	2.4	28	100	0	132	43	25	19	10	1.83
44533511--44533551	18	2.2	19	91	8	66	48	19	0	31	1.49
44533697--44533757	25	2.4	25	97	0	113	42	19	8	29	1.80
44533826--44533850	10	2.5	10	100	0	50	44	28	8	20	1.79
44537251--44537281	16	1.9	16	93	0	53	80	3	0	16	0.83
44538204--44538246	14	3.3	13	84	9	52	69	0	23	6	1.12
44538210--44538252	12	3.3	13	87	6	52	65	0	23	11	1.25
44538204--44538278	33	2.3	33	81	11	91	70	0	20	9	1.14
44538237--44538312	21	3.6	21	73	7	57	68	2	22	6	1.25
44538224--44538278	12	4.8	12	76	15	53	70	0	18	10	1.15
44543821--44543854	4	8.5	4	100	0	68	0	23	0	76	0.79
44544142--44544185	17	2.6	17	75	13	54	63	2	0	34	1.07
44544153--44544200	23	2.0	25	84	8	64	64	0	0	35	0.94
44544598--44544635	17	2.2	17	90	0	58	26	0	2	71	1.00
44550383--44550410	3	9.3	3	100	0	56	67	0	32	0	0.91
44552889--44552996	46	2.4	44	86	6	137	37	26	4	30	1.77
44560047--44560074	2	14.0	2	100	0	56	50	0	0	50	1.00
44561884--44561941	28	2.1	28	100	0	116	65	10	10	13	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44567752--44568012	89	2.9	90	80	8	275	38	16	11	33	1.84
44568032--44568274	88	2.8	88	73	7	228	33	9	18	38	1.83
44574741--44574797	30	1.9	30	85	0	78	52	17	3	26	1.60
44575097--44575151	23	2.4	22	75	16	58	32	1	1	63	1.15
44575750--44575901	76	2.0	76	100	0	304	36	18	6	38	1.77
44580575--44580638	28	2.3	28	100	0	128	34	18	20	26	1.96
44581122--44581274	69	2.2	69	82	2	173	33	25	20	19	1.96
44581188--44581320	69	1.9	69	83	3	169	34	23	21	20	1.97
44581702--44581854	56	2.7	57	83	4	193	35	17	12	33	1.88
44606304--44606377	33	2.3	31	80	13	78	35	8	4	52	1.50
44610932--44610968	6	6.7	6	82	17	53	72	13	0	13	1.11
44610929--44610968	21	1.9	21	100	0	80	75	12	0	12	1.06
44610938--44610970	15	2.2	15	100	0	66	75	12	0	12	1.04
44611854--44611891	7	5.7	7	84	9	53	76	0	7	15	1.01
44611855--44611899	20	2.2	21	92	4	74	75	0	6	17	1.01
44611854--44611891	13	2.8	13	88	4	58	76	0	7	15	1.01
44612627--44613084	44	10.6	43	73	6	318	27	18	24	29	1.98
44612671--44613046	85	4.4	85	72	7	283	27	17	24	30	1.97
44612626--44613046	129	3.3	129	94	0	743	27	17	24	30	1.97
44614851--44614924	33	2.3	32	79	9	78	35	9	2	52	1.48
44620649--44620681	11	3.1	11	86	4	50	60	12	0	27	1.32
44624885--44624916	15	2.0	17	88	11	50	62	9	0	28	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44625075--44625114	19	2.0	20	85	4	55	47	2	12	37	1.55
44627613--44627664	27	1.9	27	100	0	104	46	13	26	13	1.80
44629914--44629959	23	1.9	25	82	8	60	36	4	8	50	1.53
44642288--44642323	18	2.0	18	100	0	72	22	27	33	16	1.95
44648079--44648142	21	3.0	21	86	0	101	17	26	17	39	1.91
44648997--44649067	30	2.4	30	80	0	88	28	19	29	22	1.98
44649428--44649514	42	2.1	42	100	0	174	31	6	19	42	1.77
44649823--44649880	19	3.1	18	77	15	64	39	6	10	43	1.66
44650376--44650441	31	2.1	31	91	0	105	43	16	21	18	1.87
44663572--44663596	2	12.5	2	100	0	50	48	0	0	52	1.00
44673203--44673243	13	3.1	14	75	10	50	19	14	17	48	1.81
44673441--44673482	20	2.2	20	87	8	61	28	0	11	59	1.33
44674498--44674542	15	3.0	15	81	9	56	64	4	0	31	1.13
44676146--44676191	16	2.6	18	78	21	53	0	17	23	58	1.38
44676628--44676656	14	2.0	15	93	6	51	37	6	13	41	1.72
44682824--44682848	13	1.9	13	100	0	50	24	32	28	16	1.96
44682756--44684116	680	2.0	680	93	0	2299	20	16	28	34	1.94
44684422--44684450	14	2.0	15	93	6	51	34	6	17	41	1.76
44685559--44685615	26	2.1	27	83	3	71	47	0	1	50	1.11
44685604--44685656	20	2.5	21	81	9	72	33	0	3	62	1.13
44699879--44699911	11	2.8	12	86	9	50	24	15	6	54	1.63
44712269--44712453	40	4.7	40	80	6	207	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44712324--44712486	79	2.1	79	81	6	188	26	20	26	25	1.99
44713912--44713945	12	2.8	12	90	0	50	35	26	35	2	1.72
44723051--44723111	25	2.4	25	88	0	86	24	19	22	32	1.97
44728673--44728716	5	9.0	5	85	9	56	22	0	0	77	0.77
44728673--44728723	18	3.0	16	83	13	59	21	1	0	76	0.88
44728684--44728732	13	3.8	13	82	12	50	18	6	0	75	1.00
44732770--44732856	38	2.2	38	81	4	102	18	19	26	35	1.95
44750151--44750195	20	2.2	20	84	0	54	68	6	0	24	1.13
44750592--44750634	20	2.2	20	91	0	68	39	20	9	30	1.84
44750968--44751074	19	5.8	18	69	18	60	50	3	2	42	1.34
44751487--44751526	19	2.1	19	85	0	53	37	2	5	55	1.35
44752266--44752301	15	2.4	15	100	0	72	33	22	19	25	1.97
44768073--44768107	9	3.9	9	100	0	70	0	54	11	34	1.37
44773636--44773676	20	2.0	21	85	4	57	48	4	2	43	1.37
44780387--44781444	531	2.0	531	98	0	2044	28	23	13	34	1.92
44784122--44784150	9	3.2	9	100	0	58	20	20	10	48	1.79
44784330--44784453	25	4.9	25	78	13	105	31	24	25	19	1.98
44784331--44784453	50	2.5	50	81	6	151	31	24	24	19	1.98
44790634--44790709	19	3.7	21	75	8	75	5	30	13	51	1.62
44793213--44793274	6	10.0	6	93	6	106	35	0	48	16	1.46
44793213--44793274	25	2.5	25	94	5	108	35	0	48	16	1.46
44793213--44793299	31	2.8	31	91	1	131	35	1	44	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44793281--44793465	60	3.1	59	75	11	225	34	4	48	13	1.62
44793254--44793433	58	3.1	58	74	13	197	33	5	46	15	1.67
44793254--44793473	118	1.9	118	96	1	406	34	4	47	14	1.63
44797070--44797111	22	2.0	22	85	4	59	66	2	0	30	1.04
44797357--44797405	21	2.3	21	92	0	80	28	40	10	20	1.85
44797531--44797556	2	13.0	2	100	0	52	50	0	0	50	1.00
44799178--44799271	10	9.9	9	68	15	55	31	4	3	60	1.32
44799129--44799232	10	10.4	10	68	18	65	29	2	1	65	1.18
44808871--44808902	12	2.6	13	85	14	50	0	18	0	81	0.70
44810795--44810836	18	2.3	19	80	19	54	64	2	0	33	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211