genome.fa.s21.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  139  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43870215--43870293	39	2.0	39	90	4	124	36	12	17	32	1.88
43874001--43874186	68	2.6	68	85	6	237	37	6	10	45	1.65
43874506--43874567	30	2.1	30	93	0	106	24	3	12	59	1.48
43878942--43879001	26	2.2	28	82	14	81	21	13	11	53	1.71
43881303--43881455	72	2.1	72	90	0	234	37	19	12	30	1.89
43883491--43883547	26	2.2	25	79	11	62	57	1	15	24	1.48
43886893--43887020	39	3.3	39	88	0	193	35	18	10	34	1.86
43890184--43890263	31	2.6	31	81	0	88	28	15	13	42	1.85
43891993--43892047	21	2.6	22	80	8	69	25	10	32	30	1.90
43892262--43892317	15	4.0	15	73	17	57	55	0	0	44	0.99
43892272--43892334	26	2.5	25	82	10	83	58	1	0	39	1.07
43892267--43892465	59	3.3	59	71	14	201	54	3	1	40	1.27
43892245--43892484	120	2.0	120	97	0	453	51	4	2	42	1.33
43905477--43907425	652	3.0	652	95	0	3408	30	19	20	29	1.97
43908388--43908425	17	2.4	17	82	8	53	65	0	0	34	0.93
43909813--43909916	45	2.3	44	83	9	131	28	5	26	38	1.79
43910173--43910219	16	3.0	16	78	12	53	51	2	0	46	1.13
43910070--43910473	120	3.4	120	95	0	711	49	5	1	43	1.36
43910455--43910713	47	5.7	46	69	16	189	47	3	3	45	1.33
43910412--43910756	91	3.6	98	89	5	441	48	2	2	45	1.31
43910514--43910764	44	5.6	43	69	13	166	48	3	2	45	1.31
43910489--43910786	91	3.3	91	96	0	535	46	3	3	46	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43914091--43914259	84	2.0	85	89	6	263	36	7	12	43	1.71
43915291--43915365	23	3.3	23	80	14	93	53	21	8	17	1.69
43915464--43915508	18	2.5	18	96	0	81	55	22	8	13	1.65
43918819--43918862	21	2.1	21	100	0	88	43	13	9	34	1.76
43931400--43931497	28	3.5	28	80	6	117	50	15	16	18	1.79
43938916--43938983	21	3.1	21	70	15	57	32	22	8	36	1.85
43949777--43949819	23	1.9	23	90	4	70	44	0	0	55	0.99
43949981--43950020	21	2.0	20	86	13	57	67	2	0	30	1.04
43951721--43951759	6	6.3	6	91	5	51	76	0	0	23	0.78
43951722--43951758	13	2.8	13	87	0	56	78	0	0	21	0.75
43951722--43951759	19	2.0	19	89	0	58	78	0	0	21	0.74
43966118--43966233	18	6.8	18	81	9	136	30	23	14	31	1.94
43966127--43966171	14	3.0	14	83	9	54	28	20	20	31	1.97
43966116--43966222	35	3.1	34	83	14	132	29	23	14	31	1.95
43974388--43974431	12	3.7	11	80	14	52	52	0	2	45	1.13
43974370--43974460	28	3.1	31	73	23	88	50	0	2	47	1.13
43995134--43995212	18	4.4	18	72	16	67	63	2	0	34	1.08
43995358--43995391	14	2.6	13	90	9	52	52	0	0	47	1.00
43995336--43995398	20	3.5	20	77	18	66	52	0	0	47	1.00
43995376--43995480	45	2.5	44	79	15	116	51	1	1	44	1.23
43995519--43995560	20	2.1	20	91	8	68	38	2	0	59	1.10
43999794--43999848	9	6.2	9	81	10	69	40	21	10	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43999794--43999845	18	2.9	18	91	0	86	38	23	9	28	1.86
43999943--44000031	39	2.3	39	82	2	115	16	2	28	52	1.56
44000010--44000038	13	2.2	13	100	0	58	17	0	41	41	1.49
44006452--44006539	42	2.1	42	82	0	104	28	20	29	21	1.98
44011715--44011777	25	2.6	25	79	2	65	33	20	28	17	1.95
44023075--44023413	44	7.8	43	73	11	124	28	24	19	28	1.99
44023175--44023495	44	7.4	44	76	7	262	30	23	17	28	1.97
44023085--44023495	88	4.7	87	75	9	270	29	24	18	28	1.98
44024240--44024288	25	2.0	25	84	8	64	22	26	4	46	1.69
44024267--44024357	44	2.1	44	91	0	146	30	13	13	42	1.82
44026618--44026650	17	1.9	17	100	0	66	42	9	0	48	1.35
44027098--44027219	60	2.1	57	84	4	154	23	16	7	52	1.69
44036912--44036937	13	2.0	13	100	0	52	76	0	0	23	0.78
44050704--44050767	31	2.1	30	82	8	76	64	0	6	29	1.18
44052038--44052095	10	5.9	10	78	11	57	37	1	0	60	1.07
44052069--44052093	11	2.3	11	100	0	50	40	0	0	60	0.97
44052103--44052155	20	2.7	20	82	5	54	33	1	0	64	1.05
44052205--44052372	84	2.0	84	82	6	207	35	7	18	38	1.80
44052739--44052788	21	2.6	19	75	15	50	28	8	2	62	1.35
44055572--44055609	15	2.5	15	87	8	51	18	23	0	57	1.40
44057828--44058592	131	5.9	131	84	1	827	37	12	18	31	1.88
44063779--44063874	26	3.7	25	91	2	129	25	21	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44069539--44069580	16	2.6	16	81	11	59	42	11	11	33	1.78
44077377--44077452	35	2.2	35	90	2	118	27	3	7	60	1.42
44080691--44080876	40	4.7	40	87	5	243	24	22	26	26	2.00
44080691--44080909	80	2.7	79	79	10	241	26	21	26	26	1.99
44087939--44088230	43	6.8	43	89	0	404	29	30	18	21	1.97
44092948--44092972	13	1.9	13	100	0	50	32	8	4	56	1.47
44093535--44093592	26	2.1	27	84	6	73	41	41	0	17	1.49
44094214--44094497	41	7.0	41	89	2	351	27	30	23	18	1.98
44094214--44094497	122	2.3	123	91	1	464	27	30	23	18	1.98
44094214--44094497	82	3.5	82	90	1	428	27	30	23	18	1.98
44094540--44094666	40	3.2	39	75	5	130	25	19	19	35	1.95
44098032--44098093	31	2.1	29	85	11	81	27	3	0	69	1.04
44098048--44098093	16	3.0	15	78	6	56	30	2	0	67	1.03
44098063--44098136	37	2.0	38	94	2	132	37	1	0	60	1.05
44098076--44098136	11	6.2	11	74	18	55	40	1	0	57	1.08
44098108--44098176	32	2.2	32	84	2	86	34	0	1	63	1.03
44098070--44098176	37	3.1	36	84	11	118	34	0	0	63	1.07
44098125--44098189	32	2.0	32	85	5	87	33	0	4	61	1.16
44100225--44100985	151	5.0	150	82	8	966	29	10	7	52	1.62
44100225--44100992	306	2.5	303	91	2	1236	30	10	7	52	1.62
44101320--44101500	10	16.9	10	69	16	105	1	28	0	69	0.98
44101358--44101508	20	7.7	20	74	16	145	2	28	0	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44101322--44101508	44	4.1	43	73	19	114	2	29	0	68	1.01
44101358--44101491	54	2.5	54	87	3	191	2	28	0	69	1.00
44101320--44101498	54	3.3	54	75	12	170	1	29	0	69	0.98
44104455--44104491	6	6.5	6	87	6	51	81	0	0	18	0.70
44104455--44104492	16	2.3	17	90	4	60	78	0	0	21	0.74
44105724--44105866	50	2.8	50	83	1	178	27	22	28	21	1.99
44117539--44117585	14	3.4	14	80	13	62	25	2	0	72	0.96
44119135--44119168	18	1.9	17	88	5	50	26	0	2	70	1.01
44137341--44137383	8	5.1	8	84	15	52	83	0	16	0	0.64
44137341--44137381	19	2.2	19	86	8	57	85	0	14	0	0.60
44144023--44144076	25	2.3	24	81	9	67	37	1	7	53	1.40
44147050--44147092	22	2.0	22	81	9	52	67	6	2	23	1.27
44148660--44148699	20	2.1	18	86	9	53	67	0	7	25	1.16
44149595--44149695	42	2.4	43	83	5	125	26	18	22	31	1.97
44149596--44149695	43	2.4	42	83	5	121	27	19	22	32	1.97
44149550--44149708	43	3.7	42	72	10	117	26	17	25	30	1.97
44151027--44151146	60	2.0	60	98	0	231	33	9	28	29	1.88
44155446--44155482	2	18.5	2	100	0	74	48	51	0	0	1.00
44156648--44156751	52	2.0	52	92	0	172	36	25	12	25	1.91
44166227--44166265	16	2.4	16	86	0	60	48	2	12	35	1.55
44166278--44166331	25	2.2	24	83	12	65	51	1	9	37	1.45
44166278--44166331	27	2.1	27	86	6	76	51	1	9	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44167649--44167697	15	3.4	15	83	10	59	12	6	40	40	1.67
44168064--44168103	18	2.2	18	95	0	71	27	10	37	25	1.88
44168199--44168715	50	10.4	50	69	5	265	24	22	21	31	1.99
44168153--44168715	100	5.6	99	84	2	626	24	22	22	31	1.98
44168153--44168715	299	1.9	299	82	2	720	24	22	22	31	1.98
44168812--44169493	88	7.8	88	93	0	1143	22	24	25	27	2.00
44168812--44169493	351	1.9	352	93	0	1170	22	24	25	27	2.00
44175008--44175046	16	2.4	16	82	0	51	51	2	10	35	1.50
44175059--44175121	25	2.4	25	81	5	72	53	1	7	36	1.40
44175035--44175134	45	2.3	43	80	13	107	52	1	9	38	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211