genome.fa.s21.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  152  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47867296--47867358	6	11.6	5	83	12	56	14	1	7	76	1.08
47870299--47870385	44	2.0	44	82	11	106	49	2	2	45	1.27
47870331--47870399	18	3.6	19	78	11	70	56	1	0	42	1.08
47873541--47873596	19	2.9	20	80	12	64	35	3	3	57	1.34
47873626--47873682	10	5.7	10	81	6	53	28	1	3	66	1.18
47873738--47873784	19	2.5	19	77	19	53	31	6	4	57	1.43
47875614--47875679	3	21.7	3	90	3	96	33	4	0	62	1.16
47888467--47889921	96	15.0	96	89	3	1886	32	24	20	22	1.98
47889190--47889536	50	7.1	50	70	9	182	33	25	19	21	1.97
47889691--47889863	49	3.5	48	69	7	132	33	23	20	22	1.97
47891332--47891379	3	15.7	3	86	4	60	33	6	0	60	1.22
47899110--47899146	18	2.1	18	94	0	65	64	0	5	29	1.15
47899949--47900057	41	2.6	41	94	1	182	27	21	28	22	1.99
47914948--47915014	33	2.0	33	97	0	125	31	23	10	34	1.89
47915813--47915863	28	1.9	25	88	8	66	43	0	5	50	1.26
47918557--47918713	80	2.0	79	94	1	278	15	26	21	37	1.92
47918756--47918839	25	3.3	25	83	8	98	17	25	21	35	1.95
47921749--47921781	15	2.2	15	100	0	66	57	0	0	42	0.98
47921788--47921847	9	6.4	9	73	7	57	68	0	0	31	0.90
47921771--47921845	37	2.0	38	94	2	134	60	0	0	40	0.97
47921801--47921828	11	2.5	11	100	0	56	57	0	0	42	0.99
47921788--47921885	44	2.2	43	85	10	128	66	0	2	31	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47921847--47921872	11	2.4	11	100	0	52	53	0	7	38	1.30
47950343--47950424	31	2.7	31	84	7	105	32	9	10	46	1.72
47955306--47955352	25	1.9	24	82	4	58	55	2	2	40	1.24
47957688--47957720	14	2.3	15	90	10	52	36	0	0	63	0.95
47973349--47973386	20	1.9	20	88	0	58	18	13	0	68	1.21
47976577--47976624	13	3.4	14	77	13	53	54	0	0	45	0.99
47977054--47977103	10	5.1	10	79	11	50	52	4	0	44	1.20
47977056--47977103	19	2.5	20	79	3	53	52	4	0	43	1.20
47977107--47977145	20	2.0	20	90	5	62	64	7	0	28	1.21
47978362--47978472	32	3.3	34	75	12	93	28	32	0	37	1.64
47979534--47979579	18	2.4	18	85	10	56	45	0	6	47	1.28
47985630--47985672	18	2.4	18	84	7	52	55	0	2	41	1.12
47985778--47985816	20	2.0	20	94	0	69	51	10	10	28	1.68
47989313--47989369	19	3.1	19	79	5	80	36	12	0	50	1.40
47989626--47989682	19	3.1	19	79	5	80	50	0	12	36	1.40
47990238--47990296	27	2.2	27	84	0	73	15	27	27	30	1.96
47990339--47990400	27	2.4	27	91	5	101	46	0	11	41	1.39
47991429--47991512	43	2.0	43	88	4	125	45	8	8	38	1.65
47997695--47997781	31	2.7	32	78	16	99	28	1	8	62	1.31
47997821--47997865	21	2.2	20	84	11	56	20	6	2	71	1.20
47998460--47998585	63	2.0	63	92	0	207	27	21	17	33	1.96
48000274--48000321	18	2.6	17	81	18	53	45	6	4	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48005915--48006007	46	2.0	46	93	0	159	31	2	21	45	1.64
48022042--48022079	17	2.2	18	85	4	51	63	2	23	10	1.39
48022061--48022115	12	4.6	12	73	15	51	63	0	23	12	1.29
48035954--48036167	69	3.1	69	85	1	259	18	21	23	35	1.95
48042621--48042674	24	2.2	24	96	0	99	31	25	24	18	1.97
48042613--48042692	24	3.3	23	81	14	74	35	22	23	18	1.96
48042705--48042752	25	1.9	25	86	0	69	43	20	18	16	1.88
48042727--48042855	64	2.0	64	82	5	154	33	22	20	23	1.97
48063035--48063083	25	1.9	26	84	12	66	53	6	2	38	1.38
48063091--48063117	5	5.4	5	100	0	54	59	0	0	40	0.98
48074086--48074141	15	3.7	15	82	0	76	46	14	39	0	1.44
48074089--48074233	48	3.0	50	85	9	160	49	15	34	0	1.45
48074127--48074215	30	2.9	30	88	5	115	50	17	31	0	1.47
48074091--48074239	18	9.1	18	71	20	121	50	15	34	0	1.44
48084096--48084168	19	3.8	19	96	0	137	36	16	9	36	1.81
48084831--48084891	30	2.0	30	100	0	122	37	13	6	42	1.70
48086723--48086767	13	3.5	13	76	11	56	42	8	15	33	1.78
48088445--48088832	192	2.0	192	99	0	767	31	14	25	28	1.94
48089734--48089794	26	2.3	26	88	0	86	29	19	18	32	1.95
48089800--48089926	54	2.4	54	90	0	191	29	19	12	38	1.89
48090177--48090229	23	2.3	23	90	6	81	20	16	15	47	1.83
48090539--48090576	19	2.0	20	89	5	60	10	42	15	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48100217--48100263	9	5.2	9	77	10	51	61	0	0	38	0.96
48100216--48100254	18	2.0	20	90	9	64	58	0	0	41	0.98
48101386--48101439	19	2.8	19	91	0	90	38	9	14	37	1.79
48101418--48101462	23	2.0	23	91	4	74	37	4	17	40	1.70
48101428--48101472	23	2.0	23	86	4	65	33	4	15	46	1.66
48104470--48104525	10	5.3	11	77	16	55	51	0	3	44	1.18
48104759--48104805	11	4.3	11	83	8	60	42	2	0	55	1.12
48104774--48104807	10	3.2	10	88	12	50	44	0	0	55	0.99
48104766--48104807	21	2.0	22	90	4	68	42	0	0	57	0.99
48112174--48112246	27	2.6	28	83	12	105	47	8	0	43	1.33
48112291--48112391	27	3.7	27	78	5	89	27	25	28	17	1.98
48112474--48112513	11	3.7	11	83	6	55	72	0	27	0	0.85
48112473--48112511	21	1.9	20	89	5	60	71	0	28	0	0.86
48112645--48112686	19	2.2	20	86	4	59	28	0	19	52	1.46
48113461--48113498	18	2.1	18	95	0	67	34	7	47	10	1.67
48117645--48117674	16	1.9	15	93	6	51	26	3	0	70	1.03
48118244--48118362	4	28.8	4	71	21	61	0	30	0	68	1.02
48118237--48118335	27	3.6	27	75	19	80	1	30	0	68	0.96
48118234--48118334	10	9.5	11	72	17	63	0	30	0	68	0.96
48118403--48118500	27	3.6	27	95	0	169	15	27	29	27	1.96
48118576--48118628	27	2.0	27	92	7	90	50	0	9	39	1.35
48118792--48118826	17	2.1	17	94	0	61	57	11	8	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48126709--48126754	18	2.6	18	92	0	74	21	23	10	43	1.84
48129800--48129909	37	2.8	41	78	9	129	37	23	15	23	1.93
48130736--48130798	8	6.9	9	74	13	58	1	20	6	71	1.16
48130804--48130842	18	2.2	18	86	4	53	30	5	2	61	1.31
48132846--48132888	13	3.5	13	75	18	56	48	13	0	37	1.43
48132846--48132890	23	2.0	23	100	0	90	48	13	0	37	1.42
48132848--48132897	23	2.2	23	92	0	82	54	12	0	34	1.38
48132907--48132955	18	2.7	18	90	0	71	51	6	8	34	1.57
48134470--48134498	5	5.8	5	100	0	58	41	0	0	58	0.98
48134520--48134586	24	2.8	23	82	13	73	74	4	19	1	1.07
48134544--48134586	13	3.5	12	81	15	52	76	0	20	2	0.89
48135881--48135927	24	2.0	24	84	16	62	31	0	17	51	1.46
48145359--48145392	6	5.5	6	86	6	50	11	2	2	82	0.89
48146706--48146749	6	8.2	6	80	19	53	47	18	0	34	1.49
48146702--48146747	20	2.2	21	92	7	85	47	19	0	32	1.50
48146712--48146741	15	2.1	14	93	6	51	46	20	0	33	1.51
48146702--48146748	11	4.5	11	87	12	73	46	19	0	34	1.50
48146729--48146784	27	2.1	27	93	0	94	57	10	5	26	1.54
48147334--48147366	15	2.2	15	89	10	50	69	0	9	21	1.15
48148747--48148991	121	2.0	121	97	0	463	28	16	21	33	1.95
48149409--48149451	18	2.7	15	77	19	50	32	27	11	27	1.92
48149415--48149472	18	3.4	18	88	6	77	37	24	8	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48159251--48159310	20	3.0	20	78	4	68	35	0	6	58	1.24
48159668--48159802	9	14.6	9	71	17	64	45	1	1	51	1.19
48159702--48159797	19	5.3	18	72	15	72	45	1	2	51	1.20
48159715--48159765	26	2.0	24	85	7	66	49	1	1	47	1.24
48159660--48159809	20	7.3	20	72	15	78	44	1	2	52	1.20
48159771--48159809	12	3.6	12	74	25	50	53	0	0	46	1.00
48160147--48160182	2	18.0	2	100	0	72	0	50	0	50	1.00
48160253--48160306	20	2.6	21	81	16	67	40	0	7	51	1.30
48160565--48160647	43	1.9	43	100	0	166	42	12	12	33	1.79
48162550--48162610	20	3.1	19	75	13	61	39	11	8	40	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211