genome.fa.s21.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  198  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61157012--61157070	30	2.0	30	83	6	75	37	1	0	61	1.07
61158771--61158821	26	2.0	26	88	7	77	25	11	35	27	1.91
61164579--61164615	5	7.4	5	93	0	65	78	0	18	2	0.87
61165299--61165338	21	1.9	21	85	10	55	65	15	5	15	1.44
61166315--61166377	33	2.0	33	84	6	85	44	1	0	53	1.10
61166875--61166936	30	2.1	30	90	0	97	14	29	14	41	1.85
61167655--61167878	117	1.9	117	82	3	281	27	17	23	31	1.97
61169339--61169412	34	2.2	34	82	4	87	29	0	4	66	1.10
61172836--61172907	26	2.7	26	85	6	83	52	2	2	41	1.30
61181928--61182475	90	6.1	90	95	0	853	25	24	23	27	2.00
61183643--61183983	51	6.7	51	93	0	504	26	29	17	26	1.98
61184032--61184079	21	2.3	21	92	0	78	45	12	37	4	1.61
61185647--61185776	64	2.0	65	98	1	253	31	13	18	36	1.90
61190195--61190228	18	1.9	17	88	5	50	50	8	35	5	1.58
61197340--61197424	26	3.3	26	76	23	106	15	7	15	62	1.52
61197324--61197429	52	2.0	52	100	0	212	16	5	15	62	1.51
61203935--61203988	27	2.1	27	93	6	94	44	25	22	7	1.79
61215179--61215256	41	1.9	41	84	5	104	37	21	0	41	1.54
61226690--61226727	9	3.7	10	86	13	51	55	2	0	42	1.14
61226690--61226727	5	7.4	5	88	8	51	55	2	0	42	1.14
61228555--61228689	42	3.2	42	64	14	114	37	27	6	28	1.82
61228549--61228718	85	2.0	85	100	0	340	36	25	8	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61233934--61233985	27	1.9	27	100	0	104	21	26	26	25	1.99
61239313--61239375	26	2.4	26	84	5	74	31	25	28	14	1.95
61244516--61244554	13	2.9	13	88	3	51	76	5	12	5	1.11
61245207--61245569	49	7.6	49	65	9	158	22	20	25	31	1.98
61245106--61245631	96	5.4	95	80	5	486	22	21	24	31	1.98
61250552--61250580	13	2.1	14	93	6	51	65	0	0	34	0.93
61268549--61268619	31	2.3	31	78	7	81	42	2	0	54	1.14
61268718--61268750	12	3.0	11	91	8	50	42	0	9	48	1.35
61271620--61271778	43	3.7	42	84	5	176	24	17	25	32	1.97
61285596--61285684	45	2.0	44	91	2	142	30	22	10	37	1.87
61290571--61290623	24	2.2	24	89	3	79	43	1	3	50	1.30
61301727--61301782	18	3.1	18	76	10	60	41	1	1	55	1.21
61313729--61313808	42	1.9	42	82	10	101	46	3	1	48	1.28
61318973--61319134	81	2.0	81	100	0	324	38	4	9	46	1.59
61320647--61320697	27	2.0	27	81	14	63	56	7	3	31	1.46
61333847--61334038	105	1.8	105	81	2	242	27	23	14	34	1.93
61338003--61338060	26	2.2	26	96	0	107	25	13	6	53	1.65
61354705--61354749	19	2.3	20	92	7	83	53	8	15	22	1.69
61356982--61357035	25	2.2	25	80	9	58	74	7	1	16	1.14
61358279--61358309	12	2.5	13	94	5	55	32	6	45	16	1.72
61364615--61364702	18	5.1	18	85	10	130	32	14	23	28	1.94
61364615--61364702	33	2.6	34	94	3	151	32	14	23	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61371321--61371381	32	1.9	32	83	12	81	44	4	1	49	1.33
61374539--61374636	45	2.2	45	83	8	121	26	6	7	60	1.47
61380737--61380787	14	3.8	13	76	10	50	23	1	1	72	1.05
61382335--61382374	13	3.2	13	76	23	50	80	0	20	0	0.72
61383221--61383255	18	2.0	17	94	5	61	74	0	14	11	1.08
61395203--61395781	44	13.2	43	62	12	147	25	24	24	25	2.00
61395189--61395811	88	7.1	88	88	0	861	25	23	25	25	2.00
61395500--61395634	43	3.1	43	61	19	98	25	24	25	23	2.00
61396035--61396175	44	3.2	44	83	6	144	28	24	20	26	1.99
61396078--61396189	44	2.5	44	85	2	145	25	21	18	33	1.96
61401422--61401475	27	2.0	28	92	3	92	20	22	29	27	1.98
61401310--61401500	104	1.8	105	93	1	330	22	18	27	31	1.97
61403212--61403250	16	2.3	16	86	8	51	48	2	0	48	1.15
61403224--61403289	7	8.6	7	76	18	53	43	1	1	53	1.19
61403234--61403302	32	2.2	32	79	7	79	47	1	2	47	1.25
61405157--61405207	13	3.9	13	77	10	59	37	0	1	60	1.08
61410826--61410881	25	2.2	25	96	0	103	42	10	26	19	1.84
61411205--61411261	26	2.1	27	83	3	71	66	3	29	0	1.08
61413289--61413358	36	1.9	36	88	5	106	37	4	14	44	1.65
61414184--61414238	21	2.6	21	85	8	67	41	1	0	56	1.10
61415346--61415378	15	2.1	17	88	11	52	69	3	0	27	1.03
61415598--61416220	105	5.9	105	83	4	729	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61415770--61415953	56	3.4	56	65	18	145	33	16	21	28	1.95
61415598--61416220	211	3.0	210	82	4	747	33	17	19	29	1.95
61417371--61417544	56	3.1	56	92	1	296	22	20	0	56	1.42
61417518--61417580	22	2.7	23	88	11	85	23	22	0	53	1.46
61417463--61417625	77	2.1	78	93	3	276	23	20	0	55	1.44
61417402--61417679	132	2.1	134	89	4	420	24	21	0	53	1.45
61417372--61417575	111	1.8	110	86	5	277	23	21	0	55	1.44
61417536--61417785	55	4.6	55	86	6	330	25	20	0	53	1.51
61417536--61417785	109	2.3	109	88	2	360	25	20	0	53	1.51
61417991--61418109	54	2.2	53	85	2	175	27	10	3	57	1.48
61418018--61418101	26	3.2	26	67	12	62	30	9	3	55	1.49
61422130--61423436	107	12.1	107	80	7	1141	31	17	17	33	1.94
61424889--61424930	15	2.9	15	82	10	52	52	0	0	47	1.00
61424915--61425102	61	3.1	61	67	14	181	48	7	1	42	1.41
61424880--61425175	120	2.5	120	94	1	522	49	5	2	43	1.37
61424880--61425174	59	4.9	59	67	16	196	49	5	2	43	1.37
61425190--61425438	91	2.7	91	96	0	446	46	2	3	46	1.33
61425678--61425723	20	2.2	22	88	7	69	45	0	0	54	0.99
61426800--61426860	23	2.7	23	94	0	104	14	19	21	44	1.86
61427800--61427854	15	3.7	15	76	13	51	30	1	0	67	1.01
61427814--61427858	8	5.9	8	75	19	51	33	2	0	64	1.06
61428122--61428164	11	3.9	11	78	9	52	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61428123--61428161	20	1.9	19	90	10	60	0	20	0	79	0.73
61428181--61428213	9	3.7	9	95	0	57	9	0	6	84	0.76
61428173--61428214	18	2.3	18	83	0	57	11	4	4	78	1.06
61432049--61432089	6	6.8	6	91	0	55	63	12	7	17	1.50
61432143--61432167	13	1.9	13	100	0	50	76	0	24	0	0.80
61434224--61434778	130	4.3	130	93	0	925	27	20	27	24	1.99
61434768--61434863	44	2.2	44	80	0	102	28	18	26	27	1.98
61434790--61434898	44	2.5	44	80	5	114	28	15	22	33	1.94
61434917--61435045	44	2.9	44	77	8	136	24	19	30	25	1.98
61435839--61435873	18	1.9	18	88	11	54	2	25	5	65	1.28
61438173--61438206	4	8.5	4	87	12	52	76	2	0	20	0.92
61441718--61441831	41	2.9	39	77	9	124	25	16	24	33	1.96
61442337--61442367	13	2.3	14	94	5	55	19	0	0	80	0.71
61443285--61443360	3	25.0	3	78	2	80	30	6	2	60	1.36
61444673--61444723	21	2.5	20	81	15	59	43	3	25	27	1.72
61446600--61446654	21	2.6	21	85	8	67	40	1	1	56	1.21
61447893--61447995	27	3.8	27	85	0	134	25	23	33	18	1.97
61447893--61447995	54	1.9	54	87	0	152	25	23	33	18	1.97
61448130--61448168	19	2.0	21	85	10	55	17	0	12	69	1.19
61448225--61448274	3	16.7	3	91	0	82	32	0	4	64	1.12
61449063--61449100	18	2.1	18	90	0	58	31	10	47	10	1.72
61450540--61450627	22	4.0	22	70	18	67	1	30	0	68	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61450519--61450598	36	2.2	38	84	6	103	1	28	0	70	0.96
61450581--61450638	27	2.1	27	90	6	91	0	39	0	60	0.97
61450520--61450622	32	3.1	31	73	17	91	0	31	0	67	0.97
61450770--61450832	26	2.4	27	91	2	110	47	0	7	44	1.32
61451700--61451730	15	2.0	16	93	6	55	32	3	0	64	1.09
61459323--61459348	6	4.3	6	100	0	52	0	19	0	80	0.71
61459473--61459527	25	2.1	26	83	10	67	30	12	12	43	1.80
61461543--61461594	20	2.5	20	75	6	50	46	5	1	46	1.38
61461580--61461666	31	2.9	30	75	10	86	45	1	1	51	1.16
61462708--61462770	20	3.2	20	70	17	67	41	3	4	50	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211