genome.fa.s21.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  157  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49316834--49317028	98	2.0	98	94	0	345	36	24	10	28	1.89
49324232--49324276	19	2.2	20	80	11	56	40	15	17	26	1.90
49327113--49327170	30	1.9	30	96	0	107	48	5	6	39	1.52
49331048--49331080	14	2.4	14	100	0	66	33	45	15	6	1.70
49336123--49336154	14	2.3	14	100	0	64	31	46	15	6	1.71
49336815--49336880	21	2.9	23	79	18	68	21	0	12	66	1.23
49342297--49342461	54	3.0	55	68	8	140	24	27	23	24	2.00
49342236--49342398	55	3.0	55	67	5	141	20	26	25	27	1.99
49342236--49342461	109	2.1	109	87	1	319	22	26	24	26	2.00
49343610--49343684	34	2.2	35	78	7	82	34	24	18	22	1.96
49350603--49350655	3	17.3	3	77	11	54	28	1	3	66	1.20
49354490--49354585	45	2.2	45	81	5	115	32	21	16	29	1.96
49354505--49354589	45	1.9	44	87	2	125	29	23	17	29	1.97
49354699--49354806	44	2.5	44	81	6	121	33	22	17	26	1.96
49354462--49354997	218	2.5	217	85	3	684	29	24	17	28	1.98
49354884--49355239	169	2.1	170	87	4	511	27	24	18	29	1.98
49355186--49355685	128	3.9	128	94	0	849	23	25	20	30	1.99
49356992--49357041	7	7.1	7	88	11	68	16	16	0	68	1.22
49357899--49357934	17	2.1	17	89	0	54	0	22	0	77	0.76
49357930--49358017	6	14.7	6	75	11	65	14	5	11	68	1.38
49357981--49358019	20	2.0	20	100	0	78	15	7	10	66	1.43
49357942--49358017	28	2.8	26	80	7	98	14	6	13	65	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49366996--49367024	6	4.8	6	100	0	58	0	51	13	34	1.42
49368582--49368626	24	1.9	23	81	4	54	24	2	20	53	1.57
49374526--49374622	49	2.0	48	91	2	158	19	15	22	42	1.89
49375878--49375974	49	2.0	49	85	2	133	22	14	20	42	1.88
49379038--49379131	48	2.0	48	85	8	129	40	26	12	20	1.88
49381551--49381644	48	2.0	48	87	8	138	40	27	12	19	1.88
49384785--49384832	23	2.1	23	100	0	96	39	31	8	20	1.82
49385377--49385476	50	2.0	50	100	0	200	34	12	12	42	1.79
49385377--49385517	50	2.8	48	87	10	153	33	11	10	44	1.75
49388013--49388047	16	2.1	17	94	5	63	11	0	2	85	0.69
49391585--49391643	25	2.5	24	76	10	61	25	3	6	64	1.34
49393722--49393753	16	2.0	16	93	0	55	40	12	6	40	1.68
49394864--49394943	33	2.5	32	82	6	92	42	13	36	7	1.73
49394859--49394943	30	2.7	30	80	5	89	41	15	35	8	1.77
49399448--49399494	24	1.9	25	82	4	60	34	21	21	23	1.97
49400955--49401059	41	2.6	41	90	0	156	18	19	27	35	1.94
49409781--49409855	25	2.9	25	79	15	73	33	22	22	21	1.97
49410998--49411056	31	1.9	31	83	10	77	27	10	1	61	1.38
49427736--49427814	35	2.3	35	95	0	140	34	7	15	43	1.75
49429935--49429971	15	2.5	15	95	0	65	13	24	16	45	1.83
49431108--49431137	3	10.0	3	100	0	60	0	33	0	66	0.92
49443868--49443904	9	4.1	9	89	0	56	48	8	8	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49453106--49453141	18	2.0	18	94	0	63	58	5	22	13	1.56
49457991--49458360	69	5.4	69	75	10	256	24	20	24	30	1.98
49458202--49458494	68	4.3	68	70	10	202	21	20	27	29	1.98
49458141--49458426	136	2.1	137	83	0	376	22	20	26	30	1.98
49462890--49463043	42	3.7	41	82	8	170	18	16	15	49	1.80
49462891--49463059	21	8.1	21	75	6	137	18	17	15	47	1.82
49470378--49470490	21	5.4	21	75	12	79	20	19	16	43	1.88
49470378--49470465	42	2.1	42	80	0	95	22	19	14	43	1.87
49472189--49472270	37	2.2	37	91	0	128	15	12	32	39	1.85
49477537--49477601	32	2.1	32	97	2	123	47	12	9	30	1.72
49485501--49485552	23	2.4	22	81	15	63	25	1	3	69	1.16
49488600--49488624	4	6.2	4	100	0	50	24	0	0	76	0.80
49496403--49496434	13	2.5	13	100	0	64	53	9	9	28	1.64
49496417--49496475	31	1.9	31	100	0	118	49	15	15	20	1.80
49501707--49501754	20	2.3	21	78	7	62	52	2	2	43	1.24
49501812--49501836	10	2.5	10	100	0	50	56	0	0	44	0.99
49501751--49501846	46	2.1	47	80	9	108	57	5	4	33	1.40
49501878--49501931	9	5.7	10	77	14	53	44	3	0	51	1.19
49501872--49501931	19	3.2	19	75	17	63	41	5	0	53	1.23
49510017--49510065	23	2.2	23	86	13	68	28	4	2	65	1.22
49512449--49512500	3	17.3	3	80	7	61	36	1	1	59	1.19
49524429--49524768	100	3.4	98	88	4	441	33	21	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49524438--49524722	50	5.7	50	71	5	184	32	20	21	24	1.98
49524493--49524768	50	5.5	50	72	3	198	33	22	20	23	1.97
49524743--49524794	26	2.0	26	100	0	104	34	26	19	19	1.95
49524806--49524921	49	2.3	50	83	5	155	30	20	21	27	1.98
49526578--49526629	3	17.3	3	80	7	52	40	1	0	57	1.10
49526574--49526626	12	4.3	12	85	7	63	41	1	0	56	1.10
49529390--49529599	91	2.3	91	82	9	268	32	15	24	27	1.95
49534474--49534510	3	12.3	3	100	0	74	67	0	32	0	0.91
49534633--49534698	18	3.6	18	80	11	80	31	0	4	63	1.14
49534633--49534699	19	3.7	18	79	13	66	31	0	5	62	1.19
49537171--49537205	4	8.8	4	93	0	61	28	0	20	51	1.47
49565340--49565379	16	2.5	16	91	0	62	32	35	7	25	1.84
49565554--49565579	2	13.0	2	100	0	52	50	50	0	0	1.00
49567919--49567953	3	11.7	3	100	0	70	68	0	0	31	0.90
49568011--49568050	3	13.3	3	100	0	80	67	0	0	32	0.91
49567919--49568133	101	2.1	101	97	0	403	63	4	7	25	1.39
49568029--49568216	83	2.3	83	99	0	367	62	5	9	23	1.45
49568195--49568234	3	13.3	3	100	0	80	67	0	0	32	0.91
49569875--49570287	44	9.6	43	73	9	168	28	21	19	30	1.98
49569880--49570118	129	1.9	129	84	1	327	30	22	18	29	1.97
49569865--49570292	88	5.0	85	73	11	347	28	20	19	31	1.97
49570048--49570290	128	1.9	128	83	9	316	27	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49569848--49570292	173	2.6	172	85	3	617	28	20	19	31	1.97
49570435--49570476	21	2.0	21	90	0	66	21	30	7	40	1.80
49570408--49570775	108	3.5	106	70	14	337	26	24	16	32	1.96
49570309--49570846	210	2.6	210	89	2	814	27	22	17	32	1.96
49570316--49570664	102	3.4	102	68	14	280	26	23	16	33	1.95
49570645--49570686	21	2.0	21	85	0	57	21	30	4	42	1.73
49572173--49572302	46	2.9	45	77	6	147	16	23	18	41	1.89
49575101--49575126	4	6.5	4	100	0	52	0	0	46	53	1.00
49575697--49575731	16	2.2	16	100	0	70	48	17	11	22	1.79
49577069--49577096	3	9.3	3	100	0	56	67	0	0	32	0.91
49577176--49577203	3	9.3	3	100	0	56	67	0	0	32	0.91
49581541--49582071	132	4.1	132	91	3	842	26	24	18	31	1.97
49582056--49582475	46	9.1	46	89	1	635	29	30	15	24	1.96
49583520--49583566	21	2.2	21	88	0	67	25	38	10	25	1.88
49583658--49583696	8	4.6	8	90	9	60	10	12	0	76	1.01
49583657--49583696	17	2.4	17	87	12	64	10	15	0	75	1.05
49584493--49584528	6	6.0	6	87	12	56	0	16	0	83	0.65
49584500--49584530	9	3.4	9	90	0	53	0	12	0	87	0.55
49584500--49584538	18	2.2	18	86	9	53	2	15	0	82	0.79
49584543--49584637	23	3.8	24	78	10	93	12	0	9	77	0.98
49584542--49584636	9	11.3	9	87	12	125	12	0	9	77	0.98
49585357--49585393	17	2.1	18	90	5	58	45	0	24	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49591128--49591171	19	2.3	18	82	17	54	20	4	2	72	1.13
49591842--49591883	21	2.0	21	85	0	57	23	9	28	38	1.86
49597890--49597920	10	3.0	10	95	4	53	67	3	0	29	1.06
49599482--49599511	15	1.9	16	93	6	53	43	0	6	50	1.28
49599906--49599991	43	2.0	43	86	8	122	53	1	18	26	1.52
49600556--49600582	13	2.1	13	100	0	54	37	14	14	33	1.88
49606920--49606960	7	5.9	7	100	0	82	29	12	29	29	1.93
49625465--49625986	22	24.0	22	79	7	541	26	0	29	43	1.59
49625465--49625978	43	11.9	43	79	6	540	26	0	29	43	1.59
49625465--49625986	65	8.0	64	80	10	460	26	0	29	43	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211