genome.fa.s21.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  104  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32426819--32427253	23	19.0	23	73	11	297	39	23	6	30	1.80
32426970--32427250	114	2.5	114	94	0	472	39	23	6	30	1.79
32426819--32427174	160	2.2	160	92	1	597	39	23	6	30	1.80
32430588--32430815	41	5.6	41	74	4	185	30	26	17	25	1.98
32430591--32430806	81	2.7	80	81	2	227	29	27	18	25	1.98
32430885--32430977	40	2.4	40	83	7	120	26	21	17	34	1.95
32430915--32431017	40	2.5	41	76	9	104	24	19	17	38	1.92
32441853--32442078	41	5.5	41	88	0	317	23	20	23	32	1.98
32442261--32442285	12	2.1	12	100	0	50	52	8	0	40	1.31
32453547--32453611	33	2.0	33	90	0	103	40	12	26	21	1.88
32454016--32454166	40	3.8	39	79	8	171	41	18	18	21	1.91
32454226--32454317	41	2.2	41	81	11	107	27	18	25	29	1.98
32454745--32454793	7	6.9	7	86	4	71	16	0	32	51	1.45
32454748--32454789	22	2.0	21	90	4	66	16	0	33	50	1.46
32454830--32454881	7	7.3	7	81	12	61	15	0	36	48	1.45
32454745--32454880	14	9.4	14	73	17	91	18	0	33	47	1.54
32454926--32455099	14	12.2	14	70	8	73	21	1	31	44	1.62
32455016--32455076	21	2.9	22	80	9	65	16	1	42	39	1.58
32454925--32455092	86	2.0	85	80	5	187	22	1	31	44	1.63
32458025--32458208	40	4.6	40	82	6	196	23	20	27	28	1.99
32458025--32458205	80	2.3	81	83	9	221	23	20	27	27	1.99
32458106--32458255	40	3.8	38	80	8	122	24	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32465926--32466110	40	4.6	40	81	7	189	23	20	27	28	1.99
32465926--32466169	40	6.1	39	76	12	115	24	20	27	26	1.99
32472338--32472402	33	2.0	33	90	0	103	40	12	26	21	1.88
32472807--32472957	40	3.8	39	79	8	171	41	18	18	21	1.91
32473536--32473592	7	7.9	7	88	3	78	15	0	33	50	1.44
32473536--32473673	7	19.0	7	72	16	52	18	0	34	47	1.54
32473718--32473891	14	12.2	14	70	8	82	21	1	32	44	1.62
32473808--32473868	21	2.9	22	80	9	65	16	1	42	39	1.58
32473717--32473885	86	2.0	85	80	5	189	21	1	31	44	1.63
32473723--32473892	7	23.9	7	68	10	58	20	1	33	44	1.62
32475328--32475360	10	3.4	10	83	8	50	12	12	3	72	1.23
32478786--32478959	43	4.1	43	78	2	127	25	16	28	30	1.96
32481860--32481929	30	2.3	30	90	0	104	28	21	14	35	1.92
32482712--32483069	149	2.4	148	91	4	585	30	10	6	51	1.63
32483822--32483863	21	2.0	21	85	0	57	16	0	11	71	1.14
32489051--32489097	20	2.3	20	85	0	58	31	6	17	44	1.73
32489138--32489190	20	2.7	20	100	0	106	24	22	24	28	2.00
32491045--32491086	21	2.0	21	100	0	84	33	4	4	57	1.41
32496467--32496543	3	25.0	3	76	5	73	29	3	3	62	1.31
32501628--32501678	26	1.9	27	84	4	68	80	7	5	5	1.02
32502588--32502637	7	7.1	7	78	15	50	68	0	20	12	1.21
32503894--32504594	88	8.0	88	91	1	1055	24	25	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32504589--32504699	44	2.5	44	80	2	134	30	22	21	25	1.99
32504959--32505001	21	2.0	21	95	0	77	34	34	9	20	1.85
32504975--32505005	15	2.1	15	93	0	53	35	32	9	22	1.87
32506009--32506085	3	25.3	3	74	12	68	29	2	3	63	1.25
32507624--32507673	19	2.6	19	93	3	82	58	2	10	30	1.42
32509034--32509087	25	2.2	25	86	6	74	61	7	1	29	1.34
32513037--32513426	207	1.9	207	86	2	559	34	17	13	34	1.89
32518869--32518970	45	2.3	45	84	3	145	24	11	17	46	1.82
32518892--32518992	45	2.2	45	84	3	123	24	15	15	43	1.86
32534676--32534720	18	2.5	17	83	16	56	73	2	2	22	1.05
32545891--32545963	13	5.5	13	80	8	76	34	23	2	39	1.69
32549082--32549220	40	3.5	40	84	0	170	38	18	31	11	1.87
32555826--32555875	22	2.5	20	80	9	57	36	24	0	40	1.55
32555826--32555871	21	2.1	21	88	4	65	34	21	0	43	1.53
32560266--32560302	5	7.6	5	87	6	58	21	0	2	75	0.92
32560268--32560298	9	3.3	9	91	8	53	19	0	3	77	0.90
32570424--32570671	128	1.9	128	89	0	379	33	17	23	25	1.96
32570814--32571219	44	9.4	42	71	10	187	29	18	23	28	1.98
32570664--32571179	218	2.4	217	88	0	726	29	18	24	27	1.98
32577710--32577775	5	14.0	5	72	12	50	21	0	6	72	1.05
32577712--32577768	18	3.1	18	92	7	89	21	0	7	71	1.08
32590830--32590887	10	6.2	10	78	13	61	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32590830--32590887	17	3.1	19	80	12	75	68	0	0	31	0.89
32590830--32590888	9	6.4	9	81	11	75	67	0	0	32	0.91
32590830--32590891	19	3.4	18	82	10	81	67	0	0	32	0.91
32592309--32592358	21	2.4	21	86	6	66	44	0	4	52	1.20
32605569--32605624	14	4.0	14	73	13	53	0	8	10	80	0.91
32605551--32605609	29	2.1	28	84	9	75	0	10	13	76	1.02
32609360--32609408	25	2.0	25	87	0	71	32	18	14	34	1.91
32612551--32612614	26	2.5	26	100	0	128	39	28	0	32	1.57
32626505--32626660	82	1.9	81	85	3	215	26	16	28	28	1.97
32626504--32626657	55	2.9	52	82	7	175	27	16	27	27	1.97
32626505--32626660	27	5.7	27	81	6	163	26	16	28	28	1.97
32626497--32626681	27	6.8	27	75	9	101	26	16	28	29	1.97
32626497--32626681	82	2.3	81	78	2	210	26	16	28	29	1.97
32634650--32634805	82	1.9	81	85	3	215	26	16	28	28	1.97
32634649--32634802	55	2.9	52	82	7	175	27	16	27	27	1.97
32634650--32634805	27	5.7	27	81	6	163	26	16	28	28	1.97
32634642--32634826	27	6.8	27	75	9	101	26	16	28	29	1.97
32634642--32634826	82	2.3	81	78	2	210	26	16	28	29	1.97
32653549--32653588	20	2.1	20	90	9	66	55	0	10	35	1.34
32665349--32665381	13	2.5	13	86	13	50	87	0	9	3	0.63
32669792--32669825	12	2.8	12	90	0	50	64	0	26	8	1.22
32676388--32676577	74	2.6	74	76	1	193	31	18	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32680970--32681211	50	4.7	50	81	5	220	24	26	20	28	1.99
32682445--32682792	57	6.1	57	80	7	277	35	21	14	27	1.93
32682477--32682784	28	10.9	28	78	6	300	35	22	15	26	1.94
32682477--32682784	141	2.2	141	82	4	361	35	22	15	26	1.94
32691971--32692066	47	2.0	47	100	0	192	34	16	10	38	1.83
32694505--32694535	15	2.1	15	100	0	62	29	12	19	38	1.89
32704072--32704213	51	2.8	51	86	4	216	30	25	16	27	1.96
32719848--32720040	51	3.8	49	81	5	224	29	24	15	30	1.96
32719848--32720040	101	1.9	102	89	1	298	29	24	15	30	1.96
32721827--32721901	37	2.0	37	94	0	132	25	18	10	45	1.82
32722395--32722429	15	2.3	15	95	0	61	25	11	2	60	1.45
32731527--32731556	15	2.0	15	93	0	51	13	13	3	70	1.30
32732230--32732254	12	2.1	12	100	0	50	56	8	8	28	1.57
32733110--32733142	16	2.1	16	88	5	50	54	15	12	18	1.71
32740719--32740758	18	2.2	19	90	4	64	50	0	22	27	1.50
32744560--32744598	17	2.3	17	90	0	60	76	2	0	20	0.90
32744575--32744631	20	2.9	20	86	2	71	66	1	1	29	1.12
32744568--32744623	19	3.0	19	82	12	71	69	1	0	28	0.98
32753225--32753632	203	2.0	206	88	3	610	31	20	13	35	1.91
32755212--32755312	49	2.1	49	88	3	150	46	11	8	32	1.72
32769606--32769685	27	2.9	27	82	8	81	30	22	13	33	1.93
32769607--32769735	28	4.6	28	83	4	138	27	24	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32770656--32770691	2	18.0	2	94	0	63	2	50	0	47	1.15
32777264--32777307	5	8.6	5	82	5	52	4	38	0	56	1.20
32778299--32778365	28	2.4	28	87	5	91	26	23	20	28	1.99
32782808--32784312	50	29.6	50	84	4	1911	23	30	19	26	1.98
32782808--32784312	306	4.9	302	86	3	1940	23	30	19	26	1.98
32782794--32784455	206	8.1	201	84	5	1833	24	29	19	26	1.98
32784275--32784409	54	2.4	56	85	3	202	28	25	17	28	1.97
32786006--32786080	37	2.0	37	100	0	150	44	18	5	32	1.72
32787042--32787095	26	2.1	26	100	0	108	62	7	0	29	1.22
32788661--32788910	124	2.0	124	98	1	484	26	16	27	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211