genome.fa.s21.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  3  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994219--994251	10	3.2	11	87	12	52	39	0	0	60	0.97
995240--995296	17	3.1	17	77	22	53	68	5	0	26	1.11
999212--999239	2	14.0	2	100	0	56	50	0	0	50	1.00
1015874--1016244	89	4.0	95	86	7	471	49	15	6	28	1.69
1017330--1017360	3	10.3	3	92	0	53	3	67	0	29	1.06
1018909--1019039	66	2.0	66	90	3	210	32	25	15	25	1.95
1019438--1019478	21	2.0	20	90	4	64	36	0	0	63	0.95
1019424--1019478	20	3.2	18	73	24	55	34	0	0	65	0.93
1019444--1019485	20	2.1	19	86	8	57	40	2	0	57	1.12
1020879--1020923	4	11.5	4	85	4	65	44	0	2	53	1.13
1023287--1023344	30	2.0	29	86	10	82	31	8	12	48	1.70
1024483--1024523	19	2.0	21	86	9	59	73	2	2	21	1.07
1028331--1028376	21	2.2	21	84	7	58	56	4	6	32	1.45
1031974--1032017	23	2.0	22	86	4	61	25	4	9	61	1.45
1041505--1041568	30	2.1	32	82	8	80	31	10	10	46	1.74
1043557--1043599	21	2.0	21	86	0	59	51	4	2	41	1.35
1043576--1043627	26	2.0	26	92	0	86	48	3	1	46	1.31
1044032--1044065	2	17.0	2	93	0	59	50	2	0	47	1.16
1044719--1044754	8	4.4	8	89	3	54	41	2	0	55	1.14
1047198--1047543	173	2.0	173	95	0	620	31	16	21	30	1.95
1057004--1057089	31	2.8	31	80	1	102	26	15	15	43	1.86
1063701--1063770	11	6.6	11	76	17	60	38	2	0	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063684--1063796	10	11.5	10	66	16	58	34	1	0	63	1.05
1063684--1063796	40	2.8	41	89	5	187	34	1	0	63	1.05
1063776--1063817	19	2.2	19	83	8	50	38	0	0	61	0.96
1063775--1063818	20	2.3	19	88	4	61	36	0	0	63	0.95
1063690--1063818	40	3.2	40	80	9	138	36	1	0	62	1.05
1067002--1067071	35	2.1	33	84	10	88	35	11	15	37	1.84
1069900--1069969	27	2.6	27	81	0	95	27	31	32	8	1.87
1072223--1072256	14	2.4	14	85	0	50	26	0	23	50	1.50
1075958--1075984	7	3.9	7	100	0	54	88	0	0	11	0.50
1083036--1083114	41	1.9	40	85	10	106	59	1	2	36	1.19
1083052--1083122	34	2.0	34	81	10	81	61	1	1	35	1.13
1083004--1083113	21	5.2	21	71	16	77	57	3	3	35	1.34
1083396--1083443	21	2.1	23	88	11	73	62	0	2	35	1.07
1083382--1083445	21	3.0	21	69	28	53	57	1	3	37	1.24
1084798--1085088	160	1.8	158	96	2	539	33	24	17	24	1.96
1085110--1085512	72	5.5	72	86	4	488	33	22	17	27	1.96
1085110--1085479	145	2.5	145	87	3	494	33	22	17	27	1.96
1085159--1085512	145	2.4	145	86	1	505	33	22	17	26	1.96
1085548--1085754	72	2.8	73	80	9	240	30	21	17	29	1.97
1085548--1085784	72	3.1	73	77	10	219	32	20	17	29	1.96
1097014--1097123	41	2.7	41	80	8	116	58	3	3	34	1.33
1097059--1097125	19	3.4	19	78	13	73	62	1	1	34	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097423--1097472	17	2.6	20	75	15	52	68	0	4	28	1.08
1103793--1103863	3	23.7	3	80	11	83	33	2	1	61	1.19
1103819--1103855	19	1.9	19	100	0	74	32	0	0	67	0.91
1104096--1104151	27	2.1	27	83	6	69	37	8	5	48	1.58
1104351--1104417	31	2.2	31	81	5	73	26	4	2	65	1.26
1111755--1111808	4	13.5	4	96	0	99	25	0	24	50	1.50
1115768--1115877	31	3.5	31	76	7	98	41	13	5	39	1.68
1115794--1115896	31	3.4	30	77	4	107	40	16	2	39	1.63
1118863--1118924	28	2.3	28	81	8	76	43	0	0	56	0.99
1120827--1120880	9	5.8	9	82	2	63	53	9	3	33	1.50
1121355--1121390	11	3.2	12	88	11	58	47	0	52	0	1.00
1121493--1121544	12	4.2	12	83	11	61	25	1	0	73	0.94
1121491--1121530	16	2.5	17	80	19	50	20	2	0	77	0.88
1123031--1123145	57	2.0	58	84	5	153	48	4	18	28	1.67
1124617--1124696	30	2.7	30	86	0	115	47	11	7	33	1.67
1127282--1127308	2	13.5	2	100	0	54	51	0	0	48	1.00
1127442--1127535	48	2.0	48	87	8	138	40	27	12	19	1.88
1132838--1132920	30	2.7	31	81	5	96	51	14	12	21	1.74
1137855--1137891	12	3.0	13	84	11	51	29	40	18	10	1.85
1139885--1139917	18	1.9	17	88	11	50	45	0	3	51	1.16
1140437--1140484	21	2.4	19	86	6	60	20	10	33	35	1.87
1145463--1145573	54	2.1	54	100	0	222	45	18	20	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1146469--1146510	21	2.0	21	86	9	59	45	2	0	52	1.13
1146685--1146724	13	3.1	13	82	13	55	40	17	7	35	1.78
1150266--1150626	162	2.2	162	88	2	530	31	10	27	29	1.90
1150408--1150542	57	2.4	57	91	0	216	30	11	28	28	1.92
1150443--1150661	105	2.1	105	81	3	253	32	11	27	28	1.91
1150465--1150680	105	2.1	105	84	3	274	32	12	27	28	1.92
1152097--1152146	25	2.0	24	84	3	64	56	20	6	18	1.62
1153392--1153453	23	2.7	22	80	9	72	38	38	6	16	1.74
1156245--1156499	132	1.9	134	89	3	399	46	11	12	29	1.77
1158643--1159809	227	5.2	227	82	8	1385	34	15	16	33	1.90
1158951--1159359	206	2.0	206	97	0	773	33	15	18	33	1.92
1158724--1159809	433	2.4	438	88	4	1515	34	15	16	33	1.90
1171089--1171132	23	2.0	22	86	13	63	45	2	2	50	1.27
1176834--1176862	7	4.3	7	95	4	51	0	10	0	89	0.48
1176829--1176864	18	1.9	19	94	5	65	0	13	0	86	0.58
1178730--1178769	17	2.4	17	80	16	55	40	0	0	60	0.97
1180590--1180660	30	2.3	30	95	2	124	26	26	18	28	1.98
1183612--1183812	93	2.2	93	81	5	219	27	18	27	26	1.98
1183731--1183962	75	3.1	75	87	1	295	29	21	27	21	1.99
1187856--1187894	18	2.2	18	90	0	60	38	5	15	41	1.69
1192936--1192984	21	2.4	21	79	3	55	34	26	10	28	1.89
1195014--1195080	29	2.3	29	82	7	82	41	16	7	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197976--1198002	14	1.9	14	100	0	54	37	7	25	29	1.83
1198158--1198206	21	2.4	21	86	3	64	34	32	10	22	1.88
1198614--1198659	24	1.9	24	81	0	56	45	6	2	45	1.41
1198700--1198748	21	2.3	23	82	10	59	57	2	0	40	1.10
1199264--1199463	51	3.9	51	76	3	188	34	26	13	26	1.93
1201530--1201568	20	1.9	20	84	5	51	51	0	33	15	1.44
1201583--1201717	67	2.0	67	94	0	234	27	17	12	42	1.85
1202918--1202984	29	2.3	29	82	7	82	41	16	7	34	1.76
1213193--1213228	4	9.5	4	88	11	58	50	0	0	50	1.00
1214490--1214527	20	1.9	20	84	10	51	57	0	13	28	1.36
1215179--1215262	31	2.7	31	75	8	91	40	10	10	38	1.75
1215558--1215589	6	5.3	6	92	0	55	18	28	37	15	1.92
1220402--1220476	29	2.5	30	80	4	89	36	12	10	41	1.77
1223028--1223066	18	2.2	18	90	0	60	43	17	7	30	1.77
1227596--1227667	20	3.5	20	78	14	74	63	0	2	33	1.08
1227622--1227670	24	2.0	24	84	7	64	61	0	4	34	1.15
1229357--1229384	13	2.2	13	100	0	56	32	14	25	28	1.94
1230428--1230463	15	2.4	15	90	0	54	55	2	25	16	1.55
1230673--1230714	20	2.2	20	91	4	68	61	0	0	38	0.96
1231319--1231343	13	1.9	13	100	0	50	64	0	0	36	0.94
1240095--1240141	22	2.1	22	100	0	94	17	25	17	40	1.90
1248520--1248582	31	2.0	31	81	6	74	31	15	12	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1253065--1253094	15	2.0	15	93	0	51	26	3	26	43	1.70
1264995--1265055	30	2.0	31	90	3	97	19	44	0	36	1.51
1265160--1265219	30	2.0	31	86	3	86	20	38	0	41	1.52
1269504--1269543	15	2.7	14	85	11	53	47	0	5	47	1.24
1271504--1271550	23	2.1	23	88	4	69	42	8	4	44	1.54
1272670--1272757	23	3.7	22	74	8	68	39	19	10	30	1.85
1272745--1272913	24	7.4	23	70	10	105	43	20	11	25	1.85
1272696--1272902	23	8.9	23	70	6	103	44	19	9	26	1.81
1272697--1272917	69	3.2	69	90	0	334	43	19	9	26	1.82
1274401--1274597	69	2.8	69	90	0	304	24	10	20	44	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211