genome.fa.s21.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  21  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6453711--6453769	30	2.0	30	82	0	73	22	54	10	13	1.69
6453756--6453850	33	2.7	35	80	9	113	21	53	6	18	1.66
6453830--6453902	30	2.4	30	84	4	94	15	54	12	17	1.70
6453888--6453942	21	2.6	21	83	11	76	20	58	7	14	1.60
6453830--6454271	72	6.2	72	78	10	440	19	54	9	16	1.70
6453861--6453942	42	2.0	42	85	4	112	18	56	8	17	1.65
6453960--6454015	21	2.7	21	78	10	60	19	58	10	10	1.60
6454032--6454107	12	6.6	12	74	8	59	27	53	5	13	1.60
6453474--6454039	243	2.3	243	87	1	803	18	54	9	18	1.70
6454032--6454127	36	2.7	36	93	3	158	26	53	7	13	1.66
6454061--6454127	21	3.5	21	71	23	74	26	52	7	13	1.67
6454064--6454148	18	4.6	18	68	4	62	24	52	8	14	1.68
6454294--6454354	30	2.0	30	83	0	77	13	55	13	18	1.68
6454311--6454396	42	2.0	41	82	8	102	11	55	15	17	1.68
6454356--6454420	30	2.2	30	100	0	130	13	50	12	23	1.75
6454068--6454424	168	2.1	168	84	1	464	18	52	11	17	1.73
6456430--6456470	17	2.5	17	92	4	66	51	7	4	36	1.51
6456457--6456498	21	2.0	21	86	9	59	57	2	0	40	1.12
6463793--6463828	12	3.2	12	85	14	51	27	0	0	72	0.85
6464571--6464626	26	2.2	26	93	6	98	50	12	7	30	1.67
6465568--6465736	59	2.9	58	88	6	229	26	12	23	38	1.90
6473790--6473923	30	4.7	29	70	18	120	36	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6473792--6473949	43	3.7	42	89	9	232	36	1	0	60	1.12
6473811--6473931	11	11.2	12	73	25	87	38	2	0	59	1.11
6475563--6475726	43	3.8	43	89	2	231	27	29	19	23	1.98
6475563--6475726	86	1.9	87	91	1	267	27	29	19	23	1.98
6475742--6475789	20	2.4	19	80	13	53	43	2	0	54	1.12
6478330--6478485	41	3.9	41	81	2	181	33	27	19	19	1.96
6478507--6478641	40	3.4	40	82	5	159	18	19	22	39	1.93
6485728--6485874	33	4.4	32	70	9	96	27	24	15	31	1.96
6485702--6485892	101	1.9	101	89	2	294	28	24	15	31	1.95
6505488--6505520	2	16.5	2	100	0	66	48	0	0	51	1.00
6510031--6510095	32	2.1	32	94	2	114	47	10	9	32	1.70
6516209--6516273	32	2.1	32	94	2	114	47	10	9	32	1.70
6520570--6520594	13	1.9	13	100	0	50	48	20	8	24	1.76
6520835--6520919	41	2.0	42	90	2	136	35	18	17	28	1.94
6522531--6522597	27	2.4	27	78	9	73	52	2	0	44	1.16
6524108--6524163	27	2.0	29	83	10	73	26	0	21	51	1.48
6527894--6527926	5	6.4	5	96	3	57	78	0	0	21	0.75
6534642--6534677	6	6.0	6	96	0	54	0	22	33	44	1.53
6551597--6551633	18	2.1	18	90	10	58	43	5	0	51	1.24
6564155--6564288	45	3.0	45	90	2	198	26	20	10	42	1.84
6575911--6575941	16	1.9	16	93	0	53	54	0	6	38	1.26
6575881--6575944	33	2.0	34	81	9	80	53	3	4	39	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6577385--6577449	19	3.3	19	72	12	60	66	4	1	27	1.20
6577385--6577472	39	2.2	40	84	9	110	65	4	2	27	1.23
6586501--6586634	68	2.0	69	87	1	198	29	10	20	39	1.86
6599385--6599414	14	2.2	13	94	5	51	30	0	0	70	0.88
6599393--6599450	27	2.3	24	80	11	64	34	0	3	62	1.12
6602347--6602390	21	2.1	21	100	0	88	38	9	13	38	1.77
6602346--6602401	21	2.8	19	87	10	85	37	8	16	37	1.80
6602359--6602424	23	3.0	23	82	12	77	37	6	16	39	1.74
6602390--6602434	23	2.0	23	86	4	65	33	4	15	46	1.66
6602597--6602635	19	2.0	21	85	10	55	15	10	5	69	1.34
6606310--6606752	132	3.4	130	84	8	562	28	20	25	25	1.99
6606705--6606975	44	6.2	44	72	11	182	27	21	23	27	1.99
6607133--6607176	21	2.1	21	100	0	88	38	9	13	38	1.77
6607132--6607184	21	2.7	19	86	11	79	35	9	15	39	1.79
6607134--6607213	21	3.8	21	82	14	76	35	7	16	41	1.76
6607176--6607220	23	2.0	23	82	4	56	31	4	15	48	1.65
6607392--6607430	19	2.0	21	85	10	55	15	10	5	69	1.34
6615011--6615047	9	4.1	9	89	0	56	29	8	13	48	1.71
6623179--6623208	6	5.0	6	100	0	60	33	0	50	16	1.46
6639174--6639298	65	1.9	65	90	3	198	22	14	19	44	1.86
6640026--6640097	21	3.4	21	75	7	74	19	20	27	31	1.97
6640848--6641164	82	3.9	82	91	2	455	47	26	5	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6640874--6641207	82	4.2	77	90	1	281	49	24	6	20	1.71
6643933--6643992	30	2.0	31	87	9	88	21	6	16	55	1.64
6644038--6644078	22	1.9	22	85	5	57	36	0	21	41	1.54
6653445--6653593	54	2.8	54	87	2	228	42	23	15	18	1.89
6653450--6653606	81	1.9	81	84	0	206	43	22	15	18	1.88
6653445--6653595	27	5.6	27	83	0	185	42	23	15	18	1.88
6653773--6653865	26	3.6	26	91	0	141	23	22	19	34	1.96
6655219--6655255	17	2.1	18	90	5	58	43	5	5	45	1.49
6659499--6659641	42	3.5	41	69	13	105	72	4	11	11	1.27
6659534--6659599	21	3.2	20	77	12	53	78	3	7	10	1.05
6659567--6659600	10	3.4	10	84	15	52	88	2	8	0	0.62
6659567--6659600	9	3.6	9	88	11	50	88	2	8	0	0.62
6660073--6660154	39	2.1	39	97	0	155	18	19	19	42	1.89
6660529--6660561	7	4.7	7	89	10	50	69	0	15	15	1.19
6661744--6662654	175	5.2	175	89	2	1345	31	18	21	28	1.97
6661744--6662585	44	19.3	43	67	14	370	30	19	21	28	1.97
6664326--6664362	17	2.1	18	90	5	58	43	5	5	45	1.49
6665701--6665752	21	2.5	21	96	0	95	9	3	55	30	1.50
6674697--6674747	20	2.5	20	80	3	66	13	27	23	35	1.93
6679477--6679509	2	17.0	2	87	6	50	45	0	3	51	1.16
6679482--6679512	15	2.1	15	100	0	62	45	0	0	54	0.99
6684038--6684103	29	2.2	29	83	5	78	51	9	10	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6692376--6692420	22	2.0	22	82	4	54	42	4	4	48	1.43
6707006--6707126	53	2.2	53	76	12	122	46	3	1	48	1.28
6706989--6707152	80	2.0	83	81	10	196	45	2	3	48	1.31
6714957--6714985	15	1.9	15	100	0	58	6	17	27	48	1.72
6717641--6717673	16	2.0	17	88	5	50	51	9	0	39	1.34
6717768--6717822	21	2.7	20	75	5	56	63	10	0	25	1.27
6719259--6719287	13	2.1	14	93	6	51	31	0	0	68	0.89
6733236--6733303	29	2.3	29	82	0	82	63	1	7	27	1.30
6733487--6733560	28	2.6	28	84	0	103	47	6	20	25	1.74
6742395--6743586	88	13.6	88	90	1	1838	25	23	26	24	2.00
6742395--6743586	351	3.4	352	89	1	1840	25	23	26	24	2.00
6742395--6743582	439	2.7	439	90	1	1864	25	23	26	24	2.00
6753290--6753340	25	2.0	25	100	0	102	49	11	3	35	1.58
6759531--6759652	61	2.0	61	80	6	140	37	14	4	42	1.68
6762640--6762667	6	4.7	6	100	0	56	46	0	53	0	1.00
6765991--6766076	31	2.8	31	78	16	90	31	6	13	47	1.70
6767423--6767629	104	2.0	102	92	1	342	43	10	13	32	1.78
6772554--6772721	91	1.8	91	87	2	248	46	3	2	47	1.35
6772737--6773028	120	2.4	120	93	2	491	42	3	4	49	1.39
6772861--6772912	15	3.6	15	80	12	56	44	0	1	53	1.11
6772990--6773031	15	2.7	16	82	14	52	45	0	2	52	1.13
6772981--6773022	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6772965--6773290	166	2.0	162	92	5	554	46	5	3	44	1.42
6773147--6773201	24	2.2	26	81	12	71	45	0	1	52	1.11
6776786--6776818	18	1.9	17	88	11	50	54	6	3	36	1.41
6782723--6783090	32	11.5	32	83	4	411	41	16	10	31	1.82
6787981--6788024	22	2.0	22	95	0	79	27	11	22	38	1.88
6789428--6790107	32	20.8	32	79	6	650	41	16	11	31	1.83
6789428--6790107	96	6.9	96	82	6	776	41	16	11	31	1.83
6789428--6790107	64	10.4	64	84	5	727	41	16	11	31	1.83
6789548--6789642	46	2.1	46	100	0	190	42	14	10	32	1.80
6789522--6789674	78	2.0	78	84	2	200	41	15	10	32	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211