genome.fa.s21.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  169  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52665120--52665162	13	3.2	13	81	12	59	34	0	18	46	1.50
52665129--52665466	9	37.4	9	67	18	150	32	1	20	46	1.58
52665113--52665159	15	3.3	15	82	11	71	36	0	17	46	1.48
52665113--52665187	28	2.7	27	89	6	105	33	0	20	46	1.51
52665165--52665465	17	17.7	17	64	22	84	32	1	19	46	1.59
52665191--52665445	47	5.1	46	76	17	188	32	1	19	46	1.58
52665182--52665364	60	3.2	59	70	17	163	31	1	20	45	1.61
52665341--52665495	47	3.0	51	86	11	192	34	1	19	45	1.59
52665528--52665648	9	13.3	9	70	8	66	36	0	15	47	1.46
52668133--52668192	23	2.5	24	86	5	95	25	13	15	46	1.81
52670124--52670370	7	34.7	7	67	9	79	44	31	0	23	1.59
52670124--52670162	17	2.5	16	84	16	55	35	38	0	25	1.56
52670202--52670236	15	2.4	15	90	4	54	45	31	0	22	1.53
52670238--52670273	15	2.5	15	86	4	56	47	33	0	19	1.50
52670200--52670357	49	3.2	50	79	7	126	46	29	0	23	1.57
52670239--52670359	49	2.4	49	83	1	143	47	28	0	23	1.58
52670651--52670756	40	2.6	39	83	5	149	26	25	21	26	2.00
52673845--52673902	24	2.4	25	80	11	66	53	5	5	36	1.46
52677706--52677751	19	2.2	21	77	11	51	30	0	32	36	1.58
52677753--52678031	138	2.0	138	98	0	540	30	15	20	34	1.93
52688365--52688661	158	1.9	158	86	4	429	56	9	7	26	1.57
52688633--52688682	24	2.0	25	96	3	93	50	16	0	34	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52688676--52688996	158	2.1	154	88	4	459	27	9	9	53	1.63
52689569--52689604	18	2.0	18	100	0	72	44	5	0	50	1.25
52711692--52711731	6	6.7	6	100	0	80	32	0	0	67	0.91
52712404--52712494	45	2.0	46	86	2	130	45	4	1	49	1.29
52713883--52713925	22	2.0	21	86	9	59	53	2	6	37	1.41
52715737--52715787	20	2.5	20	78	6	50	29	5	7	56	1.51
52727305--52727389	41	2.0	42	88	6	129	32	15	1	50	1.51
52730557--52730607	13	3.9	13	78	0	57	31	9	23	35	1.87
52730557--52730607	26	2.0	26	84	0	66	31	9	23	35	1.87
52731065--52731111	13	3.7	13	91	2	69	31	8	14	44	1.76
52731683--52731724	19	2.1	19	86	8	57	35	2	4	57	1.33
52736348--52736394	2	23.5	2	91	0	76	0	48	4	46	1.21
52741200--52741230	3	10.3	3	92	0	53	32	0	64	3	1.09
52744193--52744406	9	22.2	9	68	14	101	59	2	2	35	1.24
52744265--52744315	19	2.7	19	93	6	86	64	1	0	33	1.05
52744321--52744368	22	2.1	22	84	7	60	58	2	2	37	1.22
52744869--52744967	9	10.8	9	70	18	62	36	2	2	59	1.20
52744930--52744983	20	2.9	19	81	10	58	38	1	1	57	1.20
52750552--52750603	27	1.9	27	88	0	77	21	5	30	42	1.76
52754654--52754679	6	4.3	6	100	0	52	53	15	15	15	1.73
52764486--52764607	51	2.4	51	93	4	201	27	29	0	42	1.56
52764608--52764674	10	6.5	10	72	6	53	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52764609--52764674	32	2.1	32	100	0	132	33	0	0	66	0.92
52764622--52764667	22	2.1	21	84	4	56	30	0	0	69	0.89
52765755--52765779	7	3.6	7	100	0	50	28	0	12	60	1.32
52766431--52766465	18	1.9	18	88	0	52	25	34	8	31	1.86
52766867--52767051	71	2.6	71	93	0	325	37	3	14	45	1.61
52767054--52767149	29	3.3	29	92	1	156	45	25	0	29	1.53
52769174--52769224	14	3.3	15	78	15	50	68	1	1	27	1.11
52784677--52784754	38	2.0	38	85	5	102	43	10	8	37	1.70
52792327--52792352	13	2.0	13	100	0	52	46	15	7	30	1.74
52794209--52794237	5	5.8	5	100	0	58	82	0	0	17	0.66
52804344--52804632	129	2.2	129	91	0	470	30	19	18	31	1.96
52820883--52820915	15	2.2	15	94	0	57	63	12	0	24	1.28
52821088--52821148	26	2.2	27	80	11	70	60	6	4	27	1.42
52821368--52821414	3	15.3	3	82	4	58	70	0	2	27	0.99
52821368--52821405	16	2.4	16	91	4	60	73	0	0	26	0.83
52821368--52821418	25	2.0	25	88	0	75	70	0	1	27	0.98
52821368--52821415	22	2.2	22	81	3	62	70	0	2	27	0.98
52821453--52821579	63	2.0	63	100	0	254	38	15	25	20	1.92
52822075--52822103	6	4.8	6	100	0	58	86	0	0	13	0.58
52823560--52823619	21	3.0	20	80	9	68	46	10	8	35	1.67
52823940--52823986	14	3.3	14	82	5	58	4	23	0	72	1.02
52825814--52825857	24	1.9	24	90	9	74	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52825924--52826100	66	2.9	59	87	11	273	45	9	5	40	1.59
52825954--52826122	66	2.5	66	97	1	311	47	8	4	39	1.54
52826111--52826152	16	2.6	16	92	0	66	42	7	2	47	1.43
52826126--52826181	23	2.5	23	82	2	69	44	1	1	51	1.22
52827571--52827599	14	2.0	15	93	6	51	48	6	6	37	1.57
52829592--52829648	17	3.4	17	74	13	55	17	7	1	73	1.14
52829592--52829648	16	3.4	16	78	9	60	17	7	1	73	1.14
52833106--52833135	14	2.1	14	93	0	51	30	16	26	26	1.97
52834116--52834657	132	4.1	132	86	1	755	29	18	25	27	1.98
52834648--52835130	181	2.7	180	86	4	668	30	17	21	30	1.97
52834788--52835094	96	3.3	94	68	17	255	31	17	22	28	1.97
52835753--52835799	21	2.2	21	85	7	60	17	4	2	76	1.04
52835749--52835805	16	3.5	15	77	13	60	15	7	1	75	1.10
52837436--52837475	20	2.0	20	90	0	62	27	10	12	50	1.72
52837421--52837487	34	1.9	35	90	3	109	31	8	13	46	1.74
52837415--52837491	14	5.0	15	71	20	52	33	9	14	42	1.77
52838184--52838220	9	4.1	9	89	0	56	45	10	10	32	1.74
52841082--52841120	20	2.1	19	90	9	62	30	0	20	48	1.50
52843834--52843937	49	2.1	49	89	0	154	30	8	10	50	1.67
52845720--52845817	44	2.2	46	90	3	155	36	29	4	29	1.76
52845727--52845817	46	2.0	44	91	4	146	38	29	4	27	1.76
52845797--52845849	16	3.3	16	91	0	88	20	32	5	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52848049--52848265	36	5.9	36	74	10	172	28	23	22	25	1.99
52848056--52848259	112	1.8	111	83	5	268	29	23	22	25	1.99
52859699--52859741	13	3.5	13	75	12	54	67	4	25	2	1.22
52859700--52859757	24	2.4	24	97	0	107	70	5	20	3	1.21
52859831--52860168	168	2.0	168	98	0	649	39	20	13	27	1.90
52874873--52874966	23	4.1	23	85	0	134	22	25	4	47	1.69
52875922--52875984	30	2.1	30	94	5	110	25	3	12	58	1.49
52876065--52876103	17	2.3	17	86	8	53	20	0	15	64	1.30
52877047--52877094	21	2.3	20	82	10	53	29	4	12	54	1.56
52879746--52879813	25	2.6	26	84	11	86	42	8	0	48	1.34
52879879--52879955	27	2.9	27	92	0	118	27	28	28	15	1.96
52879871--52879971	27	3.7	25	76	15	94	25	26	29	17	1.98
52880098--52880136	19	2.0	21	85	10	55	23	0	10	66	1.22
52880212--52880249	3	12.7	3	100	0	76	0	0	31	68	0.90
52903165--52903205	17	2.4	17	84	11	57	68	0	2	29	1.03
52904868--52904973	22	4.9	20	75	13	77	43	21	22	12	1.86
52905462--52905500	19	2.1	19	90	9	62	23	12	0	64	1.28
52908486--52908518	12	2.8	12	90	0	57	45	9	0	45	1.35
52921411--52921448	19	2.1	19	90	5	60	34	0	7	57	1.28
52921414--52921458	19	2.3	19	82	14	56	35	0	8	55	1.31
52924618--52924881	45	5.9	45	93	0	420	25	19	15	39	1.91
52924995--52925026	16	2.0	16	100	0	64	50	25	12	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52933556--52933585	15	2.0	15	93	0	51	30	26	10	33	1.89
52935925--52935961	9	4.1	9	92	0	65	29	10	13	45	1.77
52936705--52936729	7	3.6	7	100	0	50	60	0	0	40	0.97
52937362--52937402	19	2.1	19	86	4	55	9	21	14	53	1.70
52939477--52939681	5	40.8	5	66	24	87	21	3	17	57	1.55
52939486--52939561	22	3.8	21	77	19	83	23	1	15	59	1.44
52939486--52939598	59	1.9	59	96	0	208	22	1	16	59	1.46
52939633--52939668	18	1.9	19	88	5	56	22	2	16	58	1.51
52939530--52939681	44	3.6	42	77	16	149	21	4	17	55	1.59
52953654--52953686	14	2.3	15	94	5	59	75	0	24	0	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211