genome.fa.s21.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  122  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38673707--38673758	4	13.0	4	90	8	79	71	0	28	0	0.87
38675771--38675980	13	15.8	13	68	20	114	34	20	2	42	1.66
38675802--38675929	27	4.8	27	65	21	81	34	17	3	45	1.64
38675771--38675987	120	1.8	120	92	2	373	34	19	2	42	1.66
38675771--38675992	40	5.6	40	89	1	320	34	20	2	42	1.66
38678091--38678124	17	2.0	17	94	0	59	17	8	38	35	1.81
38678240--38678381	71	2.0	71	97	0	266	24	6	23	45	1.76
38689370--38689490	40	3.2	38	75	13	97	27	22	17	33	1.96
38689368--38689532	75	2.2	76	83	1	197	24	21	19	33	1.97
38694877--38694983	53	2.0	53	100	0	214	33	14	16	34	1.90
38695570--38695671	51	2.0	51	100	0	204	35	11	9	43	1.75
38696892--38696916	13	1.9	13	100	0	50	16	16	32	36	1.90
38705713--38705766	27	2.0	27	96	0	99	42	7	3	46	1.49
38708651--38708736	28	3.1	28	76	6	84	31	20	16	31	1.95
38710105--38710175	28	2.5	28	82	8	74	33	14	21	30	1.92
38710957--38710994	18	2.1	19	85	14	53	47	0	23	28	1.52
38711636--38711732	35	2.8	33	75	14	90	23	23	19	32	1.97
38713766--38713833	19	3.4	19	76	11	66	47	1	0	51	1.09
38713839--38713901	30	2.2	26	79	20	65	55	1	0	42	1.09
38727354--38727493	68	2.1	68	95	0	253	25	7	22	45	1.77
38728839--38728946	51	2.1	51	93	3	182	42	9	15	32	1.79
38732011--38732080	26	2.6	26	88	6	97	41	20	20	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38732011--38732097	27	3.3	26	83	6	86	42	18	18	20	1.89
38732274--38732348	26	2.9	26	87	0	105	16	21	22	40	1.91
38732456--38732517	28	2.2	28	88	0	88	24	22	22	30	1.99
38732474--38732552	28	2.8	28	86	0	104	21	26	25	26	1.99
38737052--38737163	34	3.4	33	80	12	122	40	0	9	49	1.42
38737224--38737869	126	5.1	126	92	1	1046	36	18	17	27	1.94
38737224--38737869	251	2.6	252	92	1	1055	36	18	17	27	1.94
38740827--38740883	25	2.3	23	78	18	62	50	3	1	43	1.29
38743077--38743141	30	2.2	30	88	0	94	35	4	30	29	1.78
38743938--38743989	22	2.4	22	83	6	61	55	11	7	25	1.61
38743972--38744009	17	2.2	17	86	9	51	63	7	7	21	1.47
38746863--38746921	19	3.1	20	74	18	63	35	28	20	15	1.93
38746866--38746953	38	2.3	38	86	3	115	30	26	23	19	1.98
38748071--38748206	25	5.4	25	74	7	123	33	19	12	33	1.90
38748050--38748221	50	3.4	49	80	7	150	34	21	14	29	1.93
38748136--38748216	25	3.2	24	68	16	58	32	24	12	30	1.92
38756023--38756117	27	3.3	29	80	7	88	28	18	20	32	1.96
38756188--38756297	32	3.5	31	67	14	91	24	30	15	30	1.96
38756180--38756381	61	3.3	61	82	2	235	29	25	14	30	1.95
38756504--38756645	53	2.7	53	83	4	169	29	25	12	32	1.93
38763502--38763528	14	1.9	14	100	0	54	25	0	0	74	0.83
38765026--38765052	14	1.9	14	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38779247--38779284	19	2.0	19	85	10	51	21	42	0	36	1.53
38791348--38791476	44	3.0	44	75	12	131	25	18	24	31	1.98
38795566--38795594	13	2.1	14	93	6	51	68	13	6	10	1.37
38797863--38797925	30	2.1	30	93	0	108	23	3	14	58	1.50
38802398--38802583	51	3.7	51	80	13	222	29	15	24	30	1.95
38803975--38804096	54	2.3	54	80	0	136	22	28	26	22	1.99
38806113--38806158	23	2.0	23	82	0	56	23	15	0	60	1.34
38810785--38810823	19	2.0	20	90	9	64	38	5	0	56	1.22
38812640--38812670	2	15.5	2	100	0	62	48	0	0	51	1.00
38815802--38815830	3	9.7	3	100	0	58	0	31	0	68	0.89
38822330--38822368	15	2.5	17	76	23	50	56	5	0	38	1.22
38826472--38826517	23	2.0	23	100	0	92	39	13	13	34	1.83
38829146--38829202	30	1.9	30	85	0	78	35	1	45	17	1.59
38831110--38831149	21	1.9	21	85	10	55	17	2	17	62	1.44
38832642--38832678	19	2.0	18	94	5	65	0	18	0	81	0.70
38836199--38836239	20	2.0	20	100	0	82	39	14	26	19	1.90
38836482--38836551	25	2.8	25	80	4	79	21	22	25	30	1.99
38837104--38837180	38	2.0	38	94	0	136	32	9	11	46	1.72
38843606--38843660	23	2.4	23	84	0	65	23	18	20	38	1.93
38849085--38849134	17	2.7	20	78	18	70	10	0	44	46	1.37
38853724--38853773	17	2.7	20	78	18	70	10	0	44	46	1.37
38859584--38859668	30	3.0	29	83	11	106	43	7	22	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38859584--38859669	25	3.0	30	85	9	110	43	6	23	26	1.79
38861835--38861956	27	4.5	27	81	0	118	27	20	15	36	1.93
38861835--38861956	54	2.3	54	82	0	136	27	20	15	36	1.93
38867440--38867497	28	2.0	28	83	3	71	39	1	22	36	1.64
38867836--38868084	50	4.8	50	85	3	300	25	21	30	22	1.99
38870323--38870380	21	2.8	21	74	10	64	34	17	31	17	1.93
38870365--38870408	21	2.2	20	83	4	52	47	15	18	18	1.83
38870488--38870575	24	3.7	24	96	0	158	20	27	7	44	1.79
38873254--38873305	27	1.9	27	84	7	70	26	30	13	28	1.94
38874994--38875054	26	2.3	26	82	0	77	31	27	14	26	1.95
38877647--38877711	32	2.1	32	82	2	78	41	9	4	44	1.57
38882149--38882184	18	2.1	18	89	5	56	61	0	2	36	1.11
38884458--38884517	21	2.9	21	85	5	77	60	3	1	35	1.23
38888702--38888738	17	2.2	16	90	4	56	0	16	5	78	0.93
38888726--38888789	33	2.0	32	87	9	94	7	10	4	76	1.14
38888684--38888804	49	2.5	50	81	9	135	9	10	5	74	1.22
38888800--38888855	23	2.4	24	85	11	73	39	0	3	57	1.16
38888800--38888890	23	4.3	22	69	25	70	41	0	2	56	1.12
38888999--38889044	20	2.5	19	83	13	60	52	2	2	43	1.25
38889152--38889199	10	4.6	10	78	19	53	60	2	0	37	1.09
38889192--38889289	10	10.2	9	70	14	54	76	5	8	10	1.15
38889223--38889300	20	4.1	19	75	9	86	74	6	12	6	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38889206--38889297	38	2.4	37	80	10	98	77	6	9	6	1.13
38893512--38893554	6	6.7	6	82	12	50	27	0	4	67	1.10
38893512--38893559	13	3.7	13	81	10	62	27	0	6	66	1.15
38896986--38897035	20	2.5	21	75	18	54	48	4	0	48	1.20
38897385--38897437	18	2.8	18	80	13	54	24	1	0	73	0.93
38897506--38897618	10	12.0	10	68	23	52	38	2	4	54	1.34
38897507--38897560	18	3.1	17	79	10	63	38	0	3	57	1.17
38897637--38897682	21	2.2	20	80	3	56	32	2	0	65	1.05
38899565--38899608	5	8.8	5	85	9	63	40	20	2	36	1.65
38900294--38900359	30	2.3	28	84	7	87	21	43	21	13	1.86
38900313--38900384	29	2.5	29	81	6	83	25	38	19	16	1.92
38901514--38901550	18	2.1	18	89	0	56	29	8	13	48	1.71
38905820--38906034	51	4.2	51	92	0	340	32	15	23	29	1.95
38905813--38906059	51	5.1	46	86	7	250	31	16	21	30	1.95
38905973--38906065	44	2.1	44	97	0	177	31	15	22	31	1.94
38908972--38909027	28	2.1	27	90	6	87	60	16	3	19	1.49
38913874--38913926	15	3.5	15	85	7	63	77	3	0	18	0.92
38913884--38913943	28	2.2	26	82	11	68	78	3	0	18	0.89
38913884--38913945	6	10.3	6	76	10	56	77	3	0	19	0.90
38913871--38913925	16	3.5	16	87	5	67	78	3	0	18	0.90
38913900--38913925	8	3.2	8	100	0	52	88	0	0	11	0.52
38913876--38913971	18	5.8	17	75	21	55	71	2	2	23	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38913974--38914047	19	3.9	18	76	16	62	63	1	2	32	1.17
38913974--38914066	29	3.3	26	76	21	73	63	1	3	32	1.17
38913985--38914067	29	2.9	28	80	16	91	63	2	2	31	1.20
38929068--38929126	7	8.1	7	77	20	59	71	3	0	25	1.02
38929068--38929126	29	2.0	29	87	12	86	71	3	0	25	1.02
38929066--38929139	22	3.4	22	80	12	82	72	4	1	21	1.08
38930071--38930114	22	2.0	21	82	4	52	22	9	0	68	1.18
38930303--38930353	14	3.8	13	85	12	59	41	37	5	15	1.72
38930295--38930332	20	1.9	20	88	0	58	39	39	7	13	1.73
38930309--38930353	14	3.3	14	87	12	67	42	37	6	13	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211