genome.fa.s21.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  155  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48722604--48722639	18	2.0	18	100	0	72	27	27	5	38	1.79
48723072--48723119	25	1.9	25	100	0	96	45	0	14	39	1.45
48723165--48723757	23	26.1	23	77	13	561	49	23	0	27	1.51
48723190--48723310	22	5.4	22	75	17	90	48	25	0	25	1.51
48723158--48723757	68	8.8	67	80	12	472	48	24	0	27	1.51
48723162--48723757	91	6.6	89	85	8	710	48	23	0	27	1.51
48723207--48723748	159	3.4	158	84	8	624	48	24	0	26	1.51
48726995--48727370	124	3.0	124	88	1	558	34	21	14	29	1.94
48728964--48729038	25	2.8	27	80	10	82	46	4	0	49	1.20
48731343--48731377	17	2.1	17	89	10	54	0	25	0	74	0.82
48731343--48731377	13	2.6	14	91	8	56	0	25	0	74	0.82
48733917--48733945	13	2.1	14	93	6	51	68	6	0	24	1.13
48742268--48742346	38	2.1	39	83	7	99	39	16	22	21	1.92
48748296--48748403	42	2.6	41	89	2	171	36	22	16	25	1.94
48750521--48750601	39	2.1	39	84	6	103	49	16	17	17	1.80
48751435--48752736	75	17.1	76	86	2	1615	27	17	19	34	1.95
48751437--48752700	151	8.3	150	84	5	1468	27	17	19	34	1.95
48753069--48753147	30	2.6	30	88	4	115	35	24	1	39	1.63
48753677--48753710	16	2.1	17	88	5	52	82	0	17	0	0.67
48760219--48760269	3	17.0	3	100	0	102	66	0	0	33	0.92
48767338--48767905	126	4.5	125	85	4	759	30	18	22	28	1.97
48771078--48771554	22	22.1	22	81	7	471	27	0	28	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48771078--48771554	43	11.0	42	81	6	465	27	0	28	44	1.57
48772099--48772141	18	2.4	18	84	0	59	46	9	27	16	1.77
48772952--48772989	20	1.9	20	84	10	51	55	7	2	34	1.43
48773930--48774027	51	1.9	51	85	8	137	46	3	23	26	1.66
48774026--48774062	16	2.4	16	91	8	60	45	0	37	16	1.47
48788563--48788632	12	5.8	12	73	17	56	28	1	2	67	1.14
48788560--48788629	34	2.0	35	94	5	124	31	2	2	62	1.24
48789958--48789997	20	2.0	20	90	0	62	30	10	10	50	1.69
48789944--48790009	35	1.9	34	84	6	89	34	7	10	46	1.67
48804168--48804853	217	3.2	217	90	1	1108	28	21	20	29	1.98
48804163--48804763	44	13.8	43	71	15	310	28	22	19	29	1.98
48817450--48817479	14	2.1	14	93	0	51	6	23	26	43	1.78
48820459--48820538	41	2.0	41	97	0	151	33	3	23	38	1.73
48822911--48822989	39	2.0	39	97	0	149	44	13	10	31	1.78
48844552--48844589	20	1.9	20	88	0	58	28	7	13	50	1.69
48847081--48847113	12	2.8	12	100	0	66	51	6	42	0	1.26
48849716--48849837	46	2.6	45	85	5	163	28	22	19	29	1.98
48850238--48850272	15	2.3	15	90	9	54	51	22	0	25	1.48
48850938--48851303	41	8.9	41	86	2	448	34	27	18	20	1.95
48850977--48851286	82	3.8	82	96	0	550	34	27	17	20	1.95
48851416--48851596	64	2.9	63	89	8	262	41	17	8	32	1.79
48861057--48861108	26	2.0	26	96	0	95	28	3	17	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48863282--48863408	25	5.1	25	92	1	211	19	29	16	33	1.94
48863486--48863747	127	2.1	127	98	1	508	24	21	22	30	1.99
48863858--48864292	43	10.1	43	81	2	381	26	29	16	27	1.97
48869405--48869432	14	2.0	14	100	0	56	50	0	0	50	1.00
48869895--48869935	21	2.0	21	90	0	64	31	46	0	21	1.52
48869905--48869935	14	2.2	14	94	0	53	32	48	0	19	1.49
48869906--48869967	21	3.0	21	83	2	63	35	45	0	19	1.51
48869954--48869991	14	2.7	15	88	12	62	42	31	0	26	1.56
48870239--48870342	14	7.3	14	71	12	68	44	34	0	20	1.58
48870300--48870337	15	2.6	15	83	4	51	44	39	0	15	1.47
48870295--48870342	22	2.2	21	81	3	60	47	31	0	20	1.50
48870581--48870784	41	5.0	41	88	0	309	29	28	22	19	1.98
48870848--48870975	40	3.2	38	78	12	125	21	25	21	32	1.98
48870866--48870975	40	2.7	40	85	4	141	22	24	21	30	1.99
48873927--48874597	333	2.0	334	98	0	1290	39	22	7	29	1.82
48879441--48879504	20	3.2	20	70	12	60	39	15	28	17	1.90
48879492--48879536	20	2.2	20	88	0	72	40	13	28	17	1.88
48879492--48879558	20	3.3	20	80	0	62	38	16	28	16	1.90
48890049--48890194	41	3.6	41	82	3	170	29	23	19	26	1.99
48893124--48893199	23	3.3	23	96	0	143	31	26	21	21	1.98
48893286--48893314	8	3.6	8	100	0	58	34	27	13	24	1.93
48893433--48893471	18	2.2	17	86	13	53	46	20	0	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48900470--48900545	23	3.3	23	96	0	143	31	26	21	21	1.98
48900631--48900659	8	3.6	8	100	0	58	34	27	13	24	1.93
48900778--48900816	18	2.2	17	86	13	53	46	20	0	33	1.51
48907860--48907885	5	5.2	5	100	0	52	80	0	19	0	0.71
48911908--48911994	25	3.6	23	74	9	66	32	21	24	21	1.98
48911976--48912043	25	2.8	25	75	6	68	30	19	29	20	1.97
48918346--48918397	21	2.6	21	90	6	81	38	15	11	34	1.83
48918741--48919231	44	11.2	44	82	2	538	29	24	15	30	1.95
48919128--48919848	88	8.2	88	93	0	1190	23	27	23	25	2.00
48925489--48925516	12	2.3	12	100	0	56	25	32	25	17	1.97
48927963--48928025	19	3.2	20	88	11	94	34	20	9	34	1.85
48927972--48928025	19	2.8	19	97	0	99	35	20	11	33	1.88
48930589--48930856	30	9.0	30	77	8	253	23	25	11	39	1.88
48930595--48930853	59	4.4	59	76	8	274	23	26	10	39	1.87
48930600--48930880	89	3.2	89	91	2	447	24	24	11	40	1.87
48933198--48933235	20	1.9	20	94	0	67	10	28	18	42	1.83
48936646--48936783	49	2.8	49	91	0	213	33	24	15	26	1.95
48937961--48938034	23	3.2	23	86	0	112	29	28	18	22	1.98
48949468--48949559	45	2.0	45	95	0	166	36	5	0	57	1.22
48965762--48965787	12	2.2	12	100	0	52	7	15	30	46	1.74
48965779--48965867	44	2.0	44	84	2	115	34	17	24	22	1.96
48965967--48966047	41	2.0	41	85	0	108	23	18	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48965997--48966290	41	7.2	41	81	1	295	22	21	24	31	1.98
48965997--48966290	82	3.6	81	82	4	329	22	21	24	31	1.98
48969684--48969728	22	2.0	22	91	0	72	48	15	2	33	1.57
48973545--48973793	50	4.8	50	85	4	284	20	29	24	26	1.99
48973544--48973793	100	2.4	104	88	6	357	20	29	24	26	1.99
48973888--48973919	13	2.5	13	94	0	55	56	12	0	31	1.37
48976213--48976257	22	2.0	22	91	0	72	48	15	2	33	1.57
48978765--48979055	43	6.8	43	84	2	379	21	19	30	28	1.97
48978704--48979055	86	4.1	84	81	6	361	23	17	29	29	1.97
48984633--48984687	25	2.2	25	83	3	67	21	27	18	32	1.96
48984675--48984731	26	2.3	26	75	6	64	28	21	17	33	1.96
48991021--48991060	15	2.7	15	88	3	55	50	0	5	45	1.23
48996711--48996761	26	1.9	26	84	11	68	56	5	11	25	1.57
48999944--49000011	34	2.0	34	85	5	93	32	23	23	20	1.98
49001194--49001470	68	4.1	68	82	2	333	38	16	20	24	1.93
49006141--49006243	9	11.4	9	80	8	111	41	22	8	27	1.83
49006141--49006248	27	4.0	27	87	1	135	41	22	9	26	1.84
49006346--49006389	18	2.4	18	88	0	61	13	2	43	40	1.57
49008330--49008734	202	2.0	202	94	0	702	25	14	21	38	1.91
49010308--49010369	19	3.1	19	75	24	65	41	1	1	54	1.19
49013815--49013953	40	3.5	41	73	11	130	30	22	17	29	1.97
49014806--49014844	19	2.1	19	85	9	53	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49014812--49014857	19	2.3	20	81	7	58	0	23	4	71	1.03
49022373--49022398	2	13.0	2	100	0	52	50	0	0	50	1.00
49024883--49024920	6	6.3	6	93	0	67	18	0	44	36	1.50
49024994--49025268	96	2.9	94	81	4	334	38	3	16	41	1.66
49025307--49025719	126	3.3	126	90	0	648	32	18	21	27	1.97
49029001--49029046	21	2.2	21	88	0	65	6	26	39	28	1.81
49029007--49029061	21	2.6	22	80	8	60	10	18	40	30	1.85
49029303--49029345	18	2.4	18	88	0	59	44	9	27	18	1.80
49033393--49033658	41	6.5	41	92	2	428	21	19	30	28	1.98
49033393--49033727	82	4.1	81	88	3	345	22	19	28	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211