genome.fa.s21.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  36  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10538768--10538825	17	3.6	17	73	19	61	37	1	1	58	1.18
10541106--10541266	87	1.9	86	83	6	209	27	14	21	37	1.92
10549889--10549962	36	2.1	36	86	0	103	29	13	17	39	1.88
10556237--10556261	12	2.1	12	100	0	50	84	0	0	16	0.63
10557169--10557202	14	2.4	14	100	0	68	32	14	26	26	1.95
10570234--10570281	24	2.0	24	84	4	62	27	18	2	52	1.57
10573845--10573965	59	2.1	59	92	3	199	44	15	8	31	1.76
10573953--10573985	13	2.5	13	90	0	57	45	0	0	54	0.99
10577358--10577387	16	1.9	15	93	6	51	43	23	0	33	1.54
10583020--10583061	19	2.2	19	86	0	57	35	21	14	28	1.92
10589440--10589490	21	2.3	21	80	6	57	43	11	15	29	1.82
10590717--10590752	10	3.3	11	88	11	56	80	8	11	0	0.90
10594455--10594507	23	2.2	24	93	3	90	45	1	7	45	1.42
10608488--10608545	24	2.5	24	72	11	57	56	6	29	6	1.51
10617236--10617265	15	2.1	14	93	6	51	33	23	13	30	1.93
10617346--10617394	25	2.0	25	83	0	62	32	14	20	32	1.92
10622842--10622890	24	2.0	24	84	0	62	8	26	38	26	1.84
10624473--10624785	155	2.0	154	88	3	459	41	14	10	33	1.79
10625947--10625996	23	2.2	23	89	7	75	44	0	8	48	1.32
10626038--10626509	158	3.0	158	88	0	714	38	10	9	41	1.71
10626627--10626716	45	2.0	45	100	0	180	37	17	11	33	1.85
10628222--10628271	13	3.8	13	79	7	57	20	8	14	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10640335--10640398	19	3.3	19	79	20	71	45	0	1	53	1.10
10640361--10640416	19	3.1	19	84	5	62	44	1	0	53	1.11
10640586--10640625	17	2.3	18	86	4	55	45	2	2	50	1.28
10644521--10644555	16	2.3	16	90	9	56	62	2	5	28	1.32
10645353--10645395	18	2.4	17	85	14	52	46	0	2	51	1.13
10645363--10645417	17	3.1	17	84	12	58	45	3	0	50	1.19
10645363--10645418	18	3.1	18	85	12	62	44	3	0	51	1.18
10645477--10645526	23	2.2	23	85	7	66	44	2	8	46	1.44
10645650--10645689	17	2.3	18	86	4	55	45	2	2	50	1.28
10645564--10646041	157	3.0	158	87	3	698	37	10	9	42	1.71
10645955--10645992	17	2.2	18	85	4	51	44	0	5	50	1.24
10648350--10648428	34	2.3	33	78	8	86	26	25	20	27	1.99
10648374--10648445	34	2.1	34	84	5	92	30	22	20	26	1.98
10648898--10649349	27	16.8	26	81	6	431	20	14	21	43	1.87
10648909--10649349	81	5.5	80	84	4	539	19	15	20	44	1.87
10659802--10659843	19	2.2	19	95	0	75	45	16	16	21	1.86
10665452--10665555	50	2.1	50	85	0	136	26	22	25	25	2.00
10665449--10666002	267	2.1	267	89	0	840	28	19	24	26	1.99
10666015--10666441	44	9.9	43	68	14	236	30	19	22	27	1.98
10666064--10666344	84	3.3	82	74	11	251	28	19	23	28	1.98
10666012--10666441	173	2.5	172	78	9	480	30	19	22	26	1.98
10667073--10667122	17	3.1	16	83	8	57	6	6	10	78	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10676570--10676608	18	2.1	19	85	4	53	35	0	5	58	1.20
10677044--10677127	32	2.6	31	80	10	80	19	2	32	46	1.62
10677462--10677514	19	2.7	19	75	13	54	20	0	30	49	1.50
10680021--10680063	20	2.2	20	88	12	63	6	11	13	67	1.41
10689683--10689713	14	2.2	14	94	0	53	61	12	3	22	1.46
10690128--10690170	19	2.3	19	83	0	50	27	23	18	30	1.98
10690251--10690325	27	2.8	27	91	0	123	33	34	16	16	1.90
10695484--10695523	20	2.0	21	90	5	64	30	5	2	62	1.29
10702652--10702856	100	2.0	100	100	0	410	35	13	10	40	1.80
10703950--10703986	17	2.2	18	85	9	51	10	13	0	75	1.04
10704005--10704047	19	2.2	19	87	4	59	6	18	2	72	1.19
10707128--10707227	45	2.2	43	83	10	128	23	27	12	38	1.90
10709712--10709838	45	2.9	44	88	3	193	22	20	22	35	1.96
10709672--10709854	88	2.1	88	85	0	240	22	20	22	33	1.97
10713729--10713789	30	2.0	30	100	0	122	26	9	9	54	1.64
10713943--10713981	20	2.0	20	85	10	53	12	17	0	69	1.19
10713952--10714005	25	2.1	26	83	10	67	11	11	0	77	0.99
10714910--10714948	21	1.9	20	84	5	51	38	0	2	58	1.12
10717988--10718056	28	2.5	28	83	6	79	8	15	0	75	1.04
10718845--10718888	6	7.7	6	89	2	56	72	0	2	25	0.96
10718838--10718888	12	4.5	11	81	11	59	72	0	3	23	1.01
10718838--10718887	18	2.9	17	88	5	73	74	0	4	22	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10734700--10734948	69	3.6	69	86	0	309	19	22	23	34	1.96
10734894--10735012	59	2.0	59	80	3	132	21	22	19	36	1.95
10734953--10735165	69	3.1	69	79	0	237	21	19	20	38	1.94
10747705--10747741	18	2.1	17	90	5	56	56	10	10	21	1.64
10750491--10750525	3	11.7	3	100	0	70	68	0	0	31	0.90
10751002--10751063	29	2.1	31	87	6	92	25	3	4	66	1.27
10752713--10752751	3	13.0	3	94	0	69	30	0	2	66	1.05
10758542--10758601	31	2.0	30	90	3	93	33	11	16	38	1.85
10765645--10765684	20	2.0	20	85	9	55	55	2	2	40	1.27
10766854--10766885	11	2.9	11	90	0	55	31	3	46	18	1.65
10770929--10771020	18	5.1	18	90	0	148	34	17	20	27	1.95
10771553--10771595	11	4.0	11	84	3	61	30	2	46	20	1.63
10771553--10771595	21	2.0	21	90	4	68	30	2	46	20	1.63
10773857--10773935	32	2.5	31	84	10	90	41	12	16	29	1.85
10780789--10780860	33	2.2	33	92	0	117	36	13	9	40	1.78
10780826--10780927	44	2.3	44	91	0	159	37	9	13	39	1.78
10783415--10783726	174	1.8	172	85	2	446	50	13	7	29	1.68
10786861--10786899	14	2.8	14	80	0	51	35	10	12	41	1.77
10787143--10787192	20	2.4	21	90	6	75	46	2	2	50	1.24
10787363--10787455	44	2.1	45	86	6	127	37	27	3	31	1.73
10787437--10787472	16	2.2	16	95	0	63	27	30	5	36	1.80
10791569--10791603	16	2.2	16	100	0	70	25	34	0	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10791802--10791971	83	2.0	83	96	0	313	28	27	20	23	1.99
10798519--10798711	50	3.7	50	85	4	233	21	29	23	25	1.99
10798526--10798716	106	1.9	100	86	6	274	20	29	23	26	1.99
10798811--10798842	13	2.5	13	94	0	55	56	12	0	31	1.37
10799054--10799111	30	1.9	30	89	0	89	31	24	3	41	1.71
10800188--10800288	40	2.5	40	90	3	159	32	24	18	23	1.97
10803250--10803316	33	2.0	33	97	0	125	20	17	20	40	1.92
10807684--10807710	14	1.9	14	100	0	54	29	14	33	22	1.94
10808579--10808616	20	1.9	20	88	0	58	28	7	18	44	1.78
10809474--10809498	13	1.9	13	100	0	50	48	0	16	36	1.46
10811171--10811287	62	1.9	59	86	5	162	41	4	2	51	1.35
10815952--10815995	22	2.0	22	86	8	63	34	9	0	56	1.31
10815962--10816003	22	1.9	22	85	0	57	30	11	2	54	1.49
10815961--10816010	22	2.3	21	80	10	55	30	12	2	56	1.47
10816119--10816174	30	1.9	30	88	3	87	30	12	3	53	1.55
10820945--10820981	12	3.2	12	85	14	51	86	0	13	0	0.57
10820945--10820988	13	3.5	13	87	3	54	81	0	18	0	0.68
10821064--10821175	42	2.6	42	88	1	161	30	16	26	26	1.96
10822913--10823075	44	3.7	44	77	7	125	30	18	23	27	1.97
10823111--10823323	106	2.0	106	91	3	349	31	17	23	27	1.97
10823257--10823404	44	3.4	43	77	7	140	30	16	25	27	1.97
10823341--10823734	207	1.9	208	90	1	630	29	17	25	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10824148--10824182	18	1.9	18	94	0	61	48	42	0	8	1.33
10825419--10825474	22	2.5	22	91	0	94	30	7	3	58	1.42
10825593--10825648	30	1.9	30	85	3	78	32	12	3	51	1.56
10837336--10837389	15	3.3	15	74	18	54	44	0	1	53	1.11
10837421--10837463	13	2.9	16	83	16	58	48	0	0	51	1.00
10837587--10837631	17	2.6	17	82	0	54	60	0	0	40	0.97
10837901--10837942	21	2.0	21	86	9	59	40	4	0	54	1.21
10841950--10842048	23	4.3	23	93	0	162	31	27	21	20	1.98
10842274--10842312	18	2.2	17	86	13	53	46	20	0	33	1.51
10844165--10844191	14	1.9	14	100	0	54	29	14	33	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211