genome.fa.s21.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  162  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50641840--50641884	23	2.0	23	82	8	56	33	26	0	40	1.57
50642029--50642057	3	9.7	3	100	0	58	65	0	0	34	0.93
50643053--50643078	3	8.7	3	100	0	52	65	0	0	34	0.93
50643682--50643741	26	2.2	27	85	5	77	61	3	3	31	1.28
50643778--50643822	16	2.8	16	77	12	56	57	0	2	40	1.11
50643887--50643941	22	2.5	22	76	8	58	58	3	9	29	1.46
50658642--50658985	172	2.0	173	93	0	591	40	14	10	34	1.80
50662384--50662418	17	2.1	17	94	0	61	62	14	0	22	1.31
50666691--50666720	11	2.7	11	89	0	51	66	6	6	20	1.38
50671001--50671200	40	5.0	40	79	1	213	20	27	17	35	1.95
50671001--50671191	79	2.4	80	83	3	242	19	27	17	35	1.95
50671804--50671961	80	2.0	80	92	0	262	23	21	28	26	1.99
50672483--50672541	29	2.1	29	81	9	68	55	3	3	37	1.33
50673945--50674013	28	2.5	28	86	9	97	63	5	7	23	1.42
50674314--50674395	19	4.0	19	78	17	92	1	25	20	52	1.54
50674332--50674380	25	2.0	25	91	0	80	2	22	24	51	1.59
50677015--50677062	18	2.7	18	96	0	87	35	12	12	39	1.81
50677486--50677658	72	2.4	72	79	5	215	26	6	12	54	1.62
50679942--50680014	28	2.6	28	78	10	85	36	2	4	56	1.33
50683395--50683492	47	2.1	46	98	1	187	42	16	8	32	1.77
50685648--50685792	23	6.3	23	79	3	103	42	26	17	12	1.85
50685665--50685805	46	3.1	45	85	6	167	42	27	19	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50685650--50685785	69	2.0	69	83	2	175	42	26	18	12	1.86
50685665--50685805	23	6.1	23	80	0	120	42	27	19	10	1.84
50690053--50690096	23	1.9	22	82	17	54	36	25	0	38	1.56
50690149--50690234	45	1.9	45	90	0	136	37	24	12	25	1.91
50690238--50690422	101	1.8	101	86	5	266	33	26	16	23	1.95
50696516--50696635	46	2.6	46	83	6	154	19	21	15	44	1.87
50696516--50696780	45	5.8	45	73	8	153	21	19	15	43	1.88
50711837--50711889	13	4.1	13	80	0	61	30	7	20	41	1.80
50715318--50715394	25	3.2	23	78	14	84	33	0	5	61	1.19
50722748--50722778	9	3.4	9	90	0	53	25	12	22	38	1.90
50722832--50722877	9	5.1	9	94	0	83	45	13	10	30	1.77
50724390--50724896	99	5.1	100	88	0	723	31	21	21	25	1.98
50724390--50724870	50	9.7	50	68	0	255	30	21	21	25	1.98
50724903--50725201	44	6.9	43	75	12	229	28	19	24	28	1.98
50726883--50726956	25	3.0	25	80	5	89	35	0	4	60	1.15
50728601--50728626	13	2.0	13	100	0	52	30	7	23	38	1.83
50729984--50730042	29	2.0	29	96	0	109	57	8	3	30	1.45
50739535--50739677	63	2.3	63	85	4	182	32	31	7	27	1.85
50742393--50742470	34	2.4	33	78	8	88	37	7	12	42	1.72
50745536--50745615	41	2.0	41	85	5	108	37	25	0	37	1.56
50746656--50746755	5	20.4	5	90	7	161	59	1	0	40	1.04
50748888--50748944	21	2.6	21	83	5	69	35	26	22	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50748888--50748936	21	2.3	21	85	0	71	32	24	24	18	1.97
50749504--50749570	34	1.9	35	87	3	100	34	7	11	46	1.69
50749551--50749636	33	2.6	32	76	5	91	26	9	17	46	1.78
50749648--50749699	18	2.7	20	74	17	56	36	3	0	59	1.16
50750663--50750698	16	2.2	16	90	0	54	0	36	0	63	0.94
50750928--50750984	8	6.8	8	75	11	51	57	0	0	42	0.98
50750930--50750987	30	2.0	28	90	6	89	53	0	0	46	1.00
50750938--50750978	20	2.0	22	90	9	68	53	0	0	46	1.00
50753554--50753702	69	2.2	69	92	0	244	42	16	15	25	1.88
50754298--50754392	43	2.2	43	84	0	127	26	26	16	30	1.97
50757037--50757195	41	3.9	41	89	1	221	36	24	18	20	1.95
50757301--50757549	4	62.2	4	99	0	480	25	24	0	50	1.50
50758755--50758786	13	2.5	13	100	0	64	40	18	6	34	1.76
50764982--50765039	3	20.3	3	92	7	95	68	0	31	0	0.89
50765144--50765262	60	2.0	60	94	0	211	33	0	12	53	1.39
50767841--50767874	18	1.9	18	94	5	61	26	5	0	67	1.13
50771100--50771215	27	4.3	27	88	0	169	21	30	24	24	1.99
50776840--50776869	16	1.9	15	93	6	51	26	3	6	63	1.35
50782130--50782170	15	2.8	15	82	14	50	21	2	14	60	1.45
50786806--50786850	23	2.0	22	91	4	72	40	17	4	37	1.70
50786829--50786903	19	3.8	19	87	6	114	37	16	8	38	1.78
50786840--50786902	21	3.1	21	88	9	103	38	14	7	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50788820--50788854	2	17.5	2	93	0	61	48	0	51	0	1.00
50798179--50798229	19	2.8	19	77	16	54	68	1	1	27	1.11
50798173--50798230	24	2.3	25	82	11	66	70	3	1	24	1.12
50803662--50803699	18	2.1	19	85	14	53	44	18	0	36	1.50
50803714--50803753	19	2.1	19	90	4	62	37	2	0	60	1.11
50812570--50812715	54	2.9	49	82	16	174	47	8	8	34	1.66
50816581--50816626	11	4.2	11	97	0	83	17	6	26	50	1.70
50816616--50816679	18	3.6	18	85	4	94	25	10	25	39	1.88
50816594--50816679	9	9.2	9	87	5	84	23	10	25	40	1.86
50817910--50818020	42	2.6	42	79	0	132	41	18	23	16	1.90
50819258--50819298	21	2.0	21	90	0	64	39	12	12	36	1.80
50822767--50822963	98	2.0	98	94	0	349	37	24	10	27	1.88
50824254--50824366	19	5.8	19	83	4	154	33	15	11	38	1.84
50824254--50824365	40	2.8	40	91	2	174	33	15	11	39	1.83
50824584--50825382	44	18.5	43	70	14	342	27	22	19	30	1.98
50824583--50825404	217	3.8	217	92	0	1308	27	22	19	30	1.98
50826824--50826861	20	1.9	20	88	0	58	2	21	0	76	0.91
50830887--50831083	98	2.0	98	93	0	340	37	24	9	27	1.87
50832392--50832466	19	3.8	19	82	6	105	32	16	13	38	1.87
50832787--50832820	12	2.7	13	86	9	52	32	0	0	67	0.91
50836046--50836109	33	1.9	34	87	6	96	43	17	4	34	1.69
50836972--50837040	22	3.1	21	83	12	77	17	5	20	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50837003--50837054	23	2.3	23	100	0	104	21	7	25	46	1.77
50838243--50838335	23	4.0	23	84	14	127	51	9	8	30	1.64
50841811--50842019	92	2.3	92	85	6	264	44	3	4	47	1.39
50841947--50841994	24	1.9	25	87	8	71	43	0	2	54	1.12
50842035--50842327	120	2.4	120	93	2	482	41	3	5	49	1.40
50842289--50842330	15	2.7	16	82	14	52	45	0	2	52	1.13
50842280--50842321	15	2.9	15	82	10	52	47	0	0	52	1.00
50847869--50847911	22	2.0	22	86	4	61	32	13	23	30	1.93
50851016--50851095	39	2.1	39	92	0	133	31	12	28	27	1.93
50861816--50861857	3	14.0	3	100	0	84	66	0	0	33	0.92
50868272--50868324	25	2.2	24	90	10	81	16	20	22	39	1.92
50870161--50870219	23	2.6	23	82	10	68	40	16	5	37	1.71
50874880--50874946	34	1.9	35	85	8	93	44	10	8	35	1.70
50878716--50878743	2	14.0	2	100	0	56	50	0	0	50	1.00
50879584--50879624	20	2.0	21	90	9	66	36	0	14	48	1.44
50880993--50881047	28	2.0	27	82	10	67	38	3	0	58	1.16
50883423--50883449	10	2.7	10	100	0	54	22	0	7	70	1.12
50887879--50887944	31	2.1	31	86	10	91	37	1	13	46	1.53
50890955--50891236	50	5.7	49	73	8	221	23	17	23	35	1.95
50890957--50891249	98	2.9	100	83	5	351	23	18	22	34	1.96
50891366--50891586	44	4.8	44	68	12	129	27	22	19	30	1.98
50891315--50892169	142	6.0	142	92	0	1406	27	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50891508--50892198	44	14.8	43	66	19	259	27	20	19	32	1.96
50892286--50892625	131	2.7	125	84	3	421	24	22	20	32	1.98
50892649--50892912	87	3.1	85	80	6	311	25	22	21	29	1.99
50900404--50900439	17	2.1	17	100	0	72	50	16	11	22	1.77
50901769--50901815	21	2.3	21	85	10	62	36	0	8	55	1.31
50901831--50901915	10	8.6	10	69	13	52	45	0	2	51	1.13
50901798--50901931	57	2.3	56	82	10	146	44	0	3	51	1.24
50901831--50901946	46	2.6	42	78	15	117	45	0	1	52	1.10
50902111--50902152	16	2.6	16	84	0	57	26	21	4	47	1.70
50915396--50915467	28	2.8	24	82	17	76	70	5	23	0	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211