genome.fa.s21.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  42  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12372026--12372084	21	2.8	20	89	7	82	66	3	10	20	1.36
12372010--12372055	15	3.4	14	80	17	60	69	2	8	19	1.25
12372026--12372084	10	5.6	10	86	11	82	66	3	10	20	1.36
12372562--12372590	6	4.8	6	100	0	58	17	13	0	68	1.20
12372556--12372604	18	2.8	18	78	12	57	10	12	0	77	0.99
12377536--12377560	13	1.9	13	100	0	50	36	0	8	56	1.29
12378532--12378565	3	11.3	3	100	0	68	35	64	0	0	0.94
12378660--12378844	96	1.9	95	82	5	230	45	18	18	17	1.86
12379249--12379283	17	2.1	18	89	10	56	48	2	5	42	1.41
12379574--12379641	30	2.3	30	82	2	84	22	26	23	27	1.99
12379774--12379817	9	4.8	9	77	5	52	22	40	2	34	1.67
12383037--12383071	17	2.1	17	100	0	70	31	28	17	22	1.96
12391496--12391558	25	2.5	24	79	5	63	36	20	15	26	1.93
12396439--12396479	21	2.0	21	90	4	66	63	21	0	14	1.30
12398221--12398256	6	6.0	6	86	0	54	47	2	19	30	1.64
12398222--12398257	18	2.0	18	94	0	63	44	2	22	30	1.67
12407601--12407701	36	2.9	34	75	5	105	27	24	17	29	1.98
12407786--12407832	20	2.3	19	80	20	51	53	8	6	31	1.57
12409357--12409451	50	1.9	50	89	4	147	49	5	12	32	1.63
12412351--12412551	40	5.0	40	86	4	235	22	20	6	50	1.71
12415733--12415775	18	2.4	18	84	0	50	39	18	6	34	1.78
12419787--12419823	15	2.5	15	90	0	56	24	2	8	64	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12419862--12419895	15	2.3	15	90	10	52	23	8	0	67	1.18
12420657--12420721	32	2.1	32	97	2	123	47	12	9	30	1.72
12443283--12443638	103	3.5	103	94	0	606	18	19	29	32	1.96
12453606--12453684	37	2.1	37	90	0	122	26	30	18	24	1.98
12453803--12454216	47	8.7	47	92	2	659	28	30	8	32	1.87
12453803--12454216	142	2.9	142	93	1	670	28	30	8	32	1.87
12457788--12458137	40	8.8	40	91	1	522	26	29	20	23	1.99
12459301--12459379	37	2.1	37	90	0	122	25	31	18	24	1.98
12459498--12459908	47	8.7	47	93	2	666	28	30	8	32	1.87
12459498--12459908	139	2.9	140	92	2	655	28	30	8	32	1.87
12459498--12459908	186	2.2	188	92	2	675	28	30	8	32	1.87
12465665--12465703	17	2.2	18	86	4	53	53	2	0	43	1.14
12466250--12466284	17	2.1	17	88	0	52	34	5	0	60	1.21
12476853--12477379	110	4.8	110	91	1	803	30	15	18	34	1.93
12483880--12483912	2	16.5	2	100	0	66	0	51	0	48	1.00
12490538--12490653	57	2.0	57	100	0	232	31	15	12	41	1.84
12499035--12499074	21	1.9	21	94	0	71	37	10	5	47	1.59
12500431--12500468	19	2.0	20	84	5	51	63	7	0	28	1.23
12503179--12503260	26	3.1	26	82	3	83	18	8	8	64	1.46
12509690--12509733	19	2.3	19	96	0	79	29	6	25	38	1.81
12522668--12522894	50	4.4	50	82	4	222	27	21	28	22	1.99
12532884--12532970	40	2.2	40	82	0	102	34	8	17	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12533161--12533633	45	10.7	45	77	9	425	23	17	17	41	1.90
12533362--12533436	33	2.3	33	90	0	123	24	17	21	37	1.94
12533428--12533454	6	4.5	6	100	0	54	18	18	14	48	1.82
12536312--12536393	35	2.3	36	83	6	105	17	13	28	41	1.87
12542830--12542923	42	2.3	42	80	9	111	21	30	32	14	1.94
12547276--12547343	29	2.3	30	77	10	77	22	16	20	41	1.90
12547283--12547338	29	1.9	29	85	7	78	25	16	19	39	1.91
12548241--12548265	12	2.1	12	100	0	50	24	36	24	16	1.94
12548425--12548501	9	8.4	9	84	8	93	41	27	9	22	1.83
12548435--12548501	28	2.4	27	75	7	55	41	26	8	22	1.83
12548502--12548527	7	3.7	7	100	0	52	11	0	0	88	0.52
12549907--12549932	6	4.3	6	100	0	52	50	0	0	50	1.00
12579438--12579475	15	2.5	16	83	12	53	36	0	13	50	1.42
12580517--12580632	54	2.1	54	100	0	232	38	5	16	39	1.71
12583152--12583339	45	4.2	45	81	5	213	37	25	13	23	1.92
12585970--12586007	3	12.7	3	100	0	76	68	0	31	0	0.90
12590359--12590422	30	2.1	30	85	0	92	29	14	23	32	1.94
12593174--12593238	20	3.2	21	84	6	80	50	10	9	29	1.68
12593247--12593341	41	2.3	40	92	1	154	40	12	6	41	1.68
12593256--12593322	20	3.3	20	68	12	55	44	8	4	41	1.56
12593275--12593341	20	3.3	20	69	10	64	41	10	5	41	1.64
12593346--12593446	40	2.5	39	77	17	100	36	14	4	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12593375--12593502	60	2.1	60	85	2	168	33	14	8	43	1.75
12593375--12593460	20	4.3	19	73	15	68	34	13	6	44	1.72
12593595--12593641	20	2.3	20	81	0	67	36	8	12	42	1.74
12593678--12593832	20	7.8	20	72	2	78	37	18	6	37	1.77
12593790--12593841	20	2.6	20	84	0	68	36	21	3	38	1.72
12593873--12594020	20	7.4	19	74	11	100	38	15	6	39	1.74
12593873--12594010	40	3.5	40	82	5	154	39	14	6	39	1.72
12593668--12594027	195	1.8	195	81	5	442	36	19	7	36	1.80
12594089--12594130	21	2.0	21	86	4	59	47	4	7	40	1.52
12594097--12594141	21	2.2	21	84	4	56	48	6	6	37	1.56
12594310--12594368	20	3.0	20	77	7	66	40	10	10	38	1.73
12596712--12596930	116	1.9	115	85	0	303	29	11	20	38	1.87
12602208--12602288	34	2.5	31	84	7	108	44	0	13	41	1.44
12602369--12602765	126	3.2	124	86	5	539	37	16	17	29	1.92
12606092--12606129	18	2.1	18	95	0	67	42	7	26	23	1.81
12607699--12607765	21	3.2	21	76	4	55	19	20	16	43	1.88
12607731--12607843	42	2.7	42	82	6	131	16	22	19	41	1.90
12607791--12607843	21	2.5	21	75	9	63	13	24	20	41	1.88
12611828--12611922	33	3.0	33	79	10	110	38	5	4	51	1.44
12612618--12612967	124	2.8	124	95	0	621	29	17	21	32	1.96
12615437--12615489	19	2.8	19	83	13	65	30	20	5	43	1.75
12618620--12618680	27	2.3	27	97	0	113	45	16	24	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12623286--12623711	44	9.6	44	79	6	383	31	17	20	30	1.96
12623286--12623711	129	3.2	132	79	5	376	31	17	20	30	1.96
12623452--12623579	45	2.9	45	84	2	168	29	16	22	31	1.96
12625146--12625194	22	2.2	21	79	10	53	28	10	2	59	1.41
12627142--12627185	21	2.1	21	86	0	61	25	6	2	65	1.28
12627256--12627302	21	2.4	21	83	13	57	31	4	2	61	1.27
12627294--12627336	8	5.6	8	78	10	54	34	0	0	65	0.93
12627294--12627337	14	2.9	16	83	13	65	34	0	0	65	0.93
12629356--12629383	9	3.1	9	100	0	56	32	10	10	46	1.73
12630607--12630654	24	2.0	24	84	8	62	56	0	8	35	1.30
12650980--12651029	21	2.3	23	86	6	68	42	12	4	42	1.60
12650980--12651026	23	2.0	23	87	4	67	40	12	4	42	1.63
12656963--12656999	19	2.0	18	89	5	56	51	5	5	37	1.48
12659152--12659186	6	5.5	6	87	12	52	65	0	20	14	1.26
12662585--12662678	25	3.8	25	78	5	93	26	23	21	28	1.99
12669753--12669844	25	3.7	25	82	2	78	28	20	19	31	1.97
12671195--12671241	24	2.0	24	83	8	60	42	19	8	29	1.80
12676103--12676132	13	2.3	13	94	0	51	40	26	3	30	1.72
12681139--12681182	18	2.5	18	88	3	63	15	2	18	63	1.41
12684062--12684115	18	3.0	18	73	10	56	46	3	12	37	1.60
12684416--12684514	17	5.9	17	83	1	119	36	4	16	43	1.67
12684433--12684532	17	5.9	18	79	13	97	35	4	16	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12684464--12684561	17	5.9	16	73	19	69	31	6	15	46	1.70
12684425--12684541	34	3.5	34	80	5	105	35	5	15	44	1.69
12698833--12698888	21	2.6	22	88	5	89	28	32	8	30	1.88
12699331--12699381	27	1.9	27	84	4	68	15	9	11	62	1.53
12705302--12705488	51	3.7	51	72	11	159	33	25	16	25	1.95
12705300--12705484	101	1.8	101	85	3	264	33	25	16	24	1.96
12712089--12712653	127	4.5	126	89	2	811	30	17	23	29	1.97
12712089--12712657	253	2.3	249	90	3	865	30	17	23	29	1.97
12715828--12716540	65	11.0	65	88	3	913	26	0	28	45	1.56
12715828--12716540	43	16.5	43	84	3	848	26	0	28	45	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211