genome.fa.s21.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  113  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35581824--35582203	25	15.0	25	77	10	218	46	20	0	33	1.55
35581839--35582170	41	8.4	40	75	18	204	46	20	0	32	1.55
35581864--35582199	16	21.0	16	73	18	242	47	19	0	33	1.53
35587800--35588160	43	8.4	43	86	1	420	26	19	29	23	1.98
35587824--35588160	85	3.9	85	84	3	426	26	19	29	24	1.98
35587818--35588160	128	2.7	127	86	2	445	25	20	30	23	1.99
35588333--35588385	27	2.0	27	85	7	72	50	3	1	43	1.30
35588380--35588418	20	1.9	21	89	5	62	35	12	0	51	1.40
35588380--35588426	21	2.2	21	85	7	60	36	12	0	51	1.40
35588525--35588561	18	2.1	18	90	5	58	24	10	8	56	1.60
35598195--35598242	13	3.6	13	73	15	53	20	8	0	70	1.12
35598233--35598268	18	1.9	18	88	5	54	19	13	2	63	1.41
35609782--35609818	19	2.0	18	89	5	56	32	24	8	35	1.85
35613887--35613948	23	2.6	25	85	14	96	16	9	22	51	1.73
35614460--35614492	10	3.5	10	92	8	52	63	6	6	24	1.40
35617312--35617338	11	2.5	11	100	0	54	22	7	18	51	1.70
35617391--35617440	7	7.0	7	77	4	55	36	0	4	60	1.16
35618823--35618961	47	3.0	47	65	17	119	44	3	5	46	1.42
35618920--35618980	28	2.2	28	85	5	81	45	0	3	50	1.17
35618829--35618980	44	3.4	42	69	20	110	44	3	3	48	1.37
35618801--35619005	91	2.2	91	88	0	293	44	4	4	46	1.43
35619021--35619911	120	7.4	120	97	0	1610	42	2	5	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35619266--35619317	15	3.6	15	80	12	56	44	0	1	53	1.11
35619384--35619435	15	3.6	15	80	12	56	44	0	1	53	1.11
35619513--35619555	15	2.8	16	79	10	54	44	0	2	53	1.13
35619021--35619916	358	2.5	361	95	1	1613	42	2	5	50	1.37
35619873--35619914	15	2.7	16	82	14	52	45	0	2	52	1.13
35619864--35619905	15	2.9	15	82	10	52	47	0	0	52	1.00
35620055--35620149	45	2.1	44	82	5	111	37	26	4	31	1.75
35620128--35620197	16	4.4	16	88	0	95	27	34	2	35	1.72
35623522--35623627	51	2.1	51	83	5	133	42	19	26	11	1.85
35624616--35624877	44	5.8	44	78	8	240	32	19	19	27	1.97
35624617--35624877	132	1.9	137	83	5	343	32	19	19	27	1.96
35625523--35625576	19	3.0	17	79	12	63	18	3	1	75	1.03
35638459--35638491	13	2.6	13	90	4	50	69	6	18	6	1.30
35642109--35642166	27	2.1	28	87	9	84	58	6	0	34	1.25
35642125--35642189	27	2.4	28	82	14	82	61	7	4	26	1.43
35643482--35643530	16	3.1	16	93	0	80	40	6	32	20	1.77
35643510--35643606	44	2.2	44	85	5	124	34	5	26	34	1.79
35643762--35643798	16	2.2	17	86	13	51	59	0	0	40	0.97
35643755--35643794	14	2.9	15	82	14	50	52	0	0	47	1.00
35643881--35644202	37	8.3	37	66	20	115	52	4	1	41	1.30
35643935--35643975	21	1.9	22	85	5	57	60	2	0	36	1.10
35643952--35643996	16	2.8	17	74	16	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35643782--35644000	102	2.2	102	94	2	388	51	3	1	43	1.27
35643884--35644202	119	2.7	115	92	6	516	52	4	1	41	1.30
35644102--35644136	18	1.9	18	88	11	54	62	0	2	34	1.10
35644107--35644149	18	2.3	19	80	12	52	60	0	2	37	1.10
35644167--35644211	21	2.2	21	96	4	83	53	11	0	35	1.37
35651732--35651765	17	2.0	17	94	0	59	38	11	14	35	1.83
35654086--35654116	7	4.4	7	100	0	62	0	25	0	74	0.82
35654044--35654122	28	2.9	28	75	16	74	2	22	3	70	1.15
35655409--35655445	19	1.9	19	94	0	65	62	2	0	35	1.10
35655409--35655453	19	2.5	17	86	13	56	60	2	0	37	1.09
35656348--35656380	14	2.5	13	90	9	57	30	0	9	60	1.27
35656660--35656721	14	4.4	14	73	15	56	69	1	11	17	1.26
35656759--35656784	11	2.4	11	100	0	52	50	7	42	0	1.31
35657443--35657474	3	10.7	3	93	0	55	37	0	0	62	0.95
35660944--35660999	16	3.5	16	77	0	67	33	5	30	30	1.80
35661469--35661493	12	2.1	12	100	0	50	32	8	32	28	1.86
35668552--35668731	75	2.5	71	80	7	211	41	4	12	42	1.62
35668929--35668981	18	2.9	18	85	0	61	16	56	1	24	1.50
35668944--35668987	6	7.3	6	94	0	61	20	59	0	20	1.39
35677267--35677424	41	3.8	39	74	12	111	23	13	27	34	1.93
35682303--35682353	15	3.6	14	80	15	61	74	1	11	11	1.15
35693380--35693538	29	5.5	29	87	3	221	27	16	22	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35693380--35693541	87	1.9	87	88	2	245	27	16	22	34	1.95
35695427--35695457	13	2.4	13	88	0	53	22	29	6	41	1.78
35699443--35700792	674	2.0	675	98	0	2594	31	11	19	36	1.88
35705923--35706020	31	3.2	30	76	8	92	44	12	9	33	1.73
35708247--35708333	37	2.4	37	84	1	122	40	31	13	14	1.86
35707814--35709191	688	2.0	688	96	0	2558	39	21	14	24	1.91
35713142--35713189	21	2.3	21	88	0	69	22	29	25	22	1.99
35713541--35713587	21	2.3	21	85	7	62	46	4	8	40	1.54
35715490--35715572	27	3.3	25	75	12	80	18	25	21	34	1.96
35716879--35716958	34	2.4	34	93	4	135	16	28	31	23	1.96
35746460--35746548	32	2.8	33	87	5	137	21	22	39	16	1.92
35748798--35748942	78	1.9	78	82	0	182	33	20	15	30	1.93
35751641--35751712	36	2.0	36	97	0	135	41	6	11	40	1.67
35766581--35766731	22	7.6	19	69	20	87	59	0	2	37	1.11
35766595--35766712	11	11.4	11	72	19	85	59	0	3	37	1.14
35766581--35766729	39	3.7	40	87	6	221	59	0	2	37	1.11
35766581--35766730	41	3.7	40	89	5	212	60	0	2	37	1.11
35766697--35766742	17	2.7	17	82	0	56	63	0	0	36	0.95
35766749--35766780	5	6.2	5	92	7	55	0	43	56	0	0.99
35771634--35771833	25	8.2	25	76	14	202	50	5	8	36	1.55
35771625--35771790	23	7.0	23	77	14	167	50	7	9	33	1.61
35771625--35771807	48	3.8	48	97	0	348	50	6	8	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35775346--35775393	26	1.9	25	84	16	64	45	0	2	52	1.12
35775472--35775682	66	3.4	63	69	21	192	41	3	6	48	1.44
35775434--35775726	120	2.4	120	94	3	502	42	2	4	49	1.38
35775559--35775610	15	3.6	15	80	12	56	44	0	1	53	1.11
35775688--35775729	15	2.7	16	82	14	52	45	0	2	52	1.13
35775679--35775720	15	2.9	15	82	10	52	47	0	0	52	1.00
35775864--35775898	16	2.2	16	100	0	70	57	11	0	31	1.34
35775935--35775969	18	2.0	17	88	5	52	45	0	0	54	0.99
35776205--35776240	16	2.2	16	100	0	72	38	36	0	25	1.56
35796315--35796403	44	2.0	44	95	0	160	23	26	4	44	1.72
35816902--35817121	110	2.0	111	96	0	406	53	8	5	32	1.53
35816991--35817051	23	2.7	23	84	0	68	62	1	6	29	1.30
35819108--35819133	13	2.0	13	100	0	52	23	23	15	38	1.92
35822616--35822655	20	2.0	20	85	5	53	30	5	0	65	1.14
35823343--35823443	49	2.1	49	92	0	166	24	24	6	43	1.79
35824748--35824791	15	2.8	17	74	19	51	22	22	0	54	1.45
35824733--35824818	43	2.0	43	86	0	118	22	24	2	51	1.60
35832602--35832687	43	2.0	43	83	0	109	24	22	1	52	1.54
35833357--35833400	19	2.4	18	80	3	52	34	13	0	52	1.41
35833810--35833844	15	2.2	16	90	5	54	0	20	2	77	0.90
35834812--35834861	25	1.9	27	84	8	68	66	0	2	32	1.03
35849161--35849388	29	7.9	29	81	2	237	25	14	21	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35855293--35855340	17	2.8	17	74	0	51	64	8	2	25	1.32
35856761--35856790	11	2.9	10	90	9	51	16	0	43	40	1.48
35862881--35863047	29	5.8	29	84	0	208	24	16	20	38	1.92
35862883--35863243	58	6.4	57	78	11	280	25	16	19	37	1.93
35862881--35863047	87	1.9	87	86	2	237	24	16	20	38	1.92
35863060--35863259	29	6.8	29	82	2	247	27	17	19	35	1.94
35862925--35863172	136	1.8	136	82	6	324	24	17	20	38	1.93
35862955--35863157	106	1.9	108	84	6	279	22	18	19	39	1.92
35863060--35863259	88	2.3	88	85	2	258	27	17	19	35	1.94
35863060--35863261	59	3.4	58	83	2	251	27	17	19	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211