genome.fa.s21.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  115  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36106070--36106166	48	2.0	48	100	0	194	36	22	20	20	1.96
36109573--36109606	16	2.1	16	89	10	52	67	0	8	23	1.18
36116039--36116133	47	2.0	46	91	2	154	36	11	3	48	1.55
36116667--36116726	30	2.0	29	90	3	93	60	11	1	26	1.41
36125804--36125854	26	2.0	25	88	3	75	23	5	3	66	1.30
36131864--36131996	44	3.0	44	83	7	180	24	14	28	33	1.94
36131954--36132495	264	2.1	264	94	0	949	28	18	25	28	1.98
36132776--36132891	45	2.6	45	74	15	114	35	19	18	25	1.95
36134620--36134670	26	2.0	25	88	3	75	23	5	3	66	1.30
36140994--36141191	50	3.8	50	82	4	207	27	21	27	23	1.99
36150743--36150774	7	4.6	7	100	0	64	28	31	12	28	1.93
36152398--36152488	47	2.0	46	93	6	157	48	10	26	14	1.77
36159338--36159476	39	3.6	39	84	5	156	43	18	5	32	1.74
36159868--36159982	58	2.0	58	94	0	203	34	23	7	33	1.84
36162699--36162726	10	2.8	10	100	0	56	17	17	0	64	1.30
36164549--36164585	9	4.3	9	86	13	60	56	10	0	32	1.34
36164551--36164588	16	2.4	16	95	0	67	55	10	0	34	1.34
36164658--36164699	16	2.6	16	88	0	57	45	4	2	47	1.36
36164673--36164727	22	2.5	22	84	0	74	43	1	1	52	1.22
36165364--36165392	3	9.7	3	100	0	58	34	0	65	0	0.93
36175491--36175548	30	1.9	30	96	0	107	34	3	22	39	1.71
36185895--36185936	13	3.2	13	82	0	57	33	21	4	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36186920--36187030	41	2.7	40	77	12	109	28	26	18	27	1.98
36187002--36187118	43	2.7	43	91	0	189	23	27	16	32	1.96
36187241--36187333	30	3.1	30	77	1	105	51	15	7	25	1.69
36188430--36188691	45	5.8	45	79	7	210	21	16	13	48	1.80
36188430--36188686	90	2.9	90	80	4	243	21	16	13	47	1.81
36188430--36188691	135	1.9	135	81	6	316	21	16	13	48	1.80
36206103--36206141	19	2.1	19	85	9	53	74	5	5	15	1.17
36214277--36214389	56	2.0	56	89	3	174	34	9	32	23	1.87
36224106--36224152	19	2.5	19	82	0	58	23	8	27	40	1.83
36241727--36241786	30	2.0	30	100	0	120	43	23	3	30	1.70
36241731--36241791	15	3.9	16	70	12	56	47	19	1	31	1.59
36245037--36245337	44	6.8	44	90	2	426	24	24	21	29	1.99
36255167--36255246	40	2.0	40	90	4	126	17	27	15	40	1.89
36261887--36261935	15	3.3	15	76	21	50	51	2	2	44	1.24
36263603--36263696	48	2.0	48	87	4	136	20	14	24	40	1.90
36266153--36266246	48	2.0	48	89	4	145	19	14	25	40	1.90
36269509--36269632	42	3.0	42	85	7	164	29	15	25	29	1.96
36282161--36282186	13	2.0	13	100	0	52	76	0	0	23	0.78
36283278--36283357	33	2.4	33	83	4	90	16	26	16	41	1.89
36283446--36283482	7	5.3	7	100	0	74	27	27	0	45	1.54
36291715--36291830	32	3.6	32	92	0	169	38	18	19	22	1.93
36291836--36291885	26	1.9	26	95	0	91	34	30	22	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36292024--36292145	24	5.1	24	82	2	113	45	19	6	27	1.75
36292024--36292145	48	2.5	48	82	0	136	45	19	6	27	1.75
36292165--36292660	27	18.4	27	82	4	513	25	22	18	34	1.96
36292593--36292683	27	3.4	27	84	0	119	19	17	19	42	1.89
36297456--36297821	43	8.6	43	75	13	341	22	17	25	33	1.96
36297459--36297821	85	4.3	85	95	1	597	22	17	25	34	1.96
36299843--36299896	27	2.0	28	85	3	74	44	3	9	42	1.54
36300783--36301031	43	5.8	43	91	1	383	26	32	18	22	1.97
36301232--36301290	18	3.3	18	63	13	50	40	10	6	42	1.65
36306022--36306078	30	1.9	30	88	0	87	14	24	15	45	1.83
36306368--36306400	13	2.5	13	95	0	57	30	9	6	54	1.56
36306888--36306946	7	8.4	7	88	0	91	32	49	0	18	1.48
36306880--36306952	21	3.5	21	81	7	85	31	45	0	23	1.53
36306989--36307028	20	2.0	20	85	9	55	37	45	0	17	1.49
36307246--36307282	14	2.6	14	86	0	56	45	27	0	27	1.54
36307654--36307815	41	4.0	41	92	0	279	28	30	22	18	1.97
36307863--36307983	39	3.1	38	79	4	134	23	21	19	34	1.96
36310987--36311047	24	2.5	25	81	2	70	36	8	11	44	1.71
36313277--36313320	20	2.2	20	91	0	70	20	13	25	40	1.89
36320997--36321040	17	2.6	17	88	0	61	4	22	2	70	1.17
36324566--36324607	20	2.2	19	95	4	75	23	4	14	57	1.56
36324826--36324928	26	4.0	26	86	5	118	24	14	25	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36324826--36324927	52	2.0	52	86	0	141	24	14	24	36	1.93
36325720--36325851	54	2.4	54	75	0	138	27	21	29	21	1.99
36335219--36335265	21	2.2	21	85	11	60	23	25	38	12	1.90
36335815--36335862	24	2.0	24	88	8	71	41	4	12	41	1.62
36343078--36343108	5	6.2	5	100	0	62	19	0	0	80	0.71
36357524--36358603	360	3.0	360	96	0	1998	34	18	13	33	1.90
36364560--36364759	41	5.0	41	82	3	228	20	29	15	35	1.93
36364560--36364759	40	5.0	40	83	3	181	20	29	15	35	1.93
36365919--36365952	12	2.9	12	86	4	52	32	0	0	67	0.91
36383872--36383973	52	2.0	51	83	11	129	41	7	11	39	1.71
36390068--36390105	16	2.3	17	82	17	53	52	13	7	26	1.67
36390076--36390105	15	1.9	16	93	6	53	53	16	6	23	1.66
36390803--36390841	17	2.3	17	86	0	51	43	30	7	17	1.77
36400201--36400446	27	9.2	27	85	3	293	45	22	17	15	1.85
36400796--36400861	28	2.4	28	94	0	114	22	24	25	27	2.00
36400796--36400890	28	3.4	29	86	2	97	21	25	26	27	1.99
36402643--36402737	48	2.0	48	89	0	145	40	26	17	15	1.90
36417015--36417047	12	2.8	12	95	0	57	27	15	12	45	1.81
36418888--36418994	29	3.8	28	74	10	92	37	14	26	22	1.92
36425668--36425764	28	3.1	32	77	21	114	25	21	24	27	1.99
36425869--36425940	26	2.8	26	91	0	108	45	23	16	13	1.83
36426109--36426376	27	9.9	27	82	2	290	20	14	19	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36427053--36427097	15	3.0	14	78	15	54	64	2	33	0	1.06
36427047--36427097	19	2.6	20	81	12	61	62	1	35	0	1.06
36427047--36427097	10	4.8	11	81	16	63	62	1	35	0	1.06
36428048--36428185	72	2.0	68	87	11	199	40	3	5	50	1.42
36429144--36429229	35	2.5	35	84	0	109	19	24	24	31	1.98
36432650--36432770	51	2.4	51	94	0	206	28	24	0	47	1.53
36433854--36433878	7	3.6	7	100	0	50	28	0	12	60	1.32
36434531--36434565	18	1.9	18	94	0	61	25	31	8	34	1.86
36434975--36435061	44	2.0	45	90	2	140	37	0	12	49	1.41
36435067--36435509	23	18.6	23	78	16	469	46	24	1	28	1.60
36435067--36435509	51	9.3	47	79	16	438	46	24	1	28	1.60
36435234--36435320	21	3.2	30	67	29	86	45	28	0	25	1.53
36435067--36435511	96	4.7	91	83	12	462	45	24	1	28	1.60
36435171--36435520	73	4.9	72	74	21	208	45	25	0	28	1.59
36438681--36439031	126	2.8	125	89	3	546	32	22	15	29	1.95
36443058--36443115	3	19.3	3	100	0	116	67	0	0	32	0.91
36448476--36448700	40	5.7	40	90	5	280	26	27	21	24	2.00
36448476--36448700	119	1.9	120	84	6	305	26	27	21	24	2.00
36456584--36456805	40	5.7	39	88	5	281	26	27	22	24	2.00
36456565--36456805	77	3.1	78	82	8	301	25	26	21	25	2.00
36471804--36471853	10	5.1	10	76	13	50	74	2	0	24	0.93
36474756--36474780	5	5.0	5	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36485890--36485937	20	2.4	20	79	6	53	29	14	14	41	1.85
36486338--36486388	23	2.3	22	90	6	77	21	3	0	74	0.98
36486983--36487010	12	2.3	12	100	0	56	35	7	0	57	1.26
36503332--36503368	15	2.5	15	95	4	67	37	13	18	29	1.90
36509159--36509187	3	9.7	3	100	0	58	31	0	0	68	0.89
36509279--36509340	31	2.0	31	100	0	124	32	9	16	41	1.80
36515438--36515499	31	2.0	31	100	0	124	32	9	16	41	1.80
36515799--36515824	3	8.7	3	100	0	52	30	0	0	69	0.89
36522948--36522978	4	7.8	4	100	0	62	0	22	0	77	0.77
36531606--36531709	54	1.9	54	86	0	145	33	22	19	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211