genome.fa.s21.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  171  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53309939--53310060	44	2.8	44	83	5	131	31	17	23	27	1.97
53310139--53310287	76	2.0	76	85	5	203	26	24	24	24	2.00
53310215--53310496	89	3.2	87	85	4	350	29	25	24	21	1.99
53310215--53310528	89	3.5	88	82	4	344	28	25	24	21	1.99
53312769--53312839	3	23.3	3	91	2	115	35	1	0	63	1.03
53314845--53314956	46	2.4	46	87	0	161	31	26	18	23	1.98
53314842--53314955	23	5.0	23	82	4	131	31	26	19	22	1.98
53321747--53321773	11	2.5	11	100	0	54	48	0	0	51	1.00
53331565--53331607	3	14.3	3	100	0	86	65	0	0	34	0.93
53336360--53336398	8	4.9	8	84	9	53	7	10	41	41	1.68
53336519--53336699	94	1.9	94	84	2	238	27	21	19	30	1.98
53342919--53343138	64	3.6	61	81	13	265	54	2	8	34	1.44
53342956--53343052	29	3.3	28	74	16	88	53	1	8	37	1.38
53342920--53343125	66	3.3	64	81	14	211	54	2	8	34	1.44
53344715--53344823	45	2.4	45	81	1	112	28	23	17	30	1.97
53344754--53344921	86	2.0	86	82	0	210	25	23	20	30	1.98
53345082--53345195	45	2.6	44	78	1	129	26	25	19	28	1.98
53344942--53345169	96	2.5	95	78	7	220	28	20	17	33	1.95
53345416--53345530	44	2.6	44	81	8	119	31	23	18	26	1.97
53345451--53345543	44	2.1	44	91	0	150	29	21	18	31	1.97
53346412--53346452	16	2.4	16	84	8	55	0	17	0	82	0.66
53346409--53346476	30	2.3	30	87	9	97	0	22	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53346409--53346475	22	3.1	22	82	2	82	0	22	0	77	0.77
53346427--53346476	16	3.3	16	84	15	63	0	22	0	78	0.76
53351055--53351084	6	5.0	6	100	0	60	33	0	16	50	1.46
53351075--53351275	64	3.2	61	84	9	241	54	1	10	33	1.46
53355165--53355215	23	2.2	23	89	0	75	39	17	9	33	1.83
53358062--53358209	25	6.4	25	77	15	106	18	25	18	37	1.93
53358064--53358151	44	2.0	44	88	0	131	20	26	18	35	1.95
53358089--53358125	19	1.9	19	100	0	74	21	29	16	32	1.95
53358145--53358213	22	3.1	22	89	0	111	17	23	17	42	1.89
53358062--53358207	69	2.1	68	80	14	158	18	25	18	37	1.93
53368662--53368705	23	1.9	23	85	0	61	43	20	2	34	1.64
53376997--53377073	38	2.0	38	94	0	136	49	22	16	11	1.78
53378362--53378426	29	2.2	31	89	8	100	53	7	7	30	1.57
53380281--53380326	3	15.7	3	95	4	85	69	0	0	30	0.89
53395127--53395155	15	1.9	15	100	0	58	13	6	24	55	1.63
53397172--53397209	19	2.0	19	94	0	67	34	26	7	31	1.85
53397540--53397673	54	2.5	55	82	9	161	43	1	34	20	1.61
53399288--53399352	33	2.0	33	82	11	80	58	6	3	32	1.38
53405688--53405727	19	2.0	19	85	9	53	65	0	0	35	0.93
53405690--53405736	19	2.3	20	78	7	51	70	2	2	25	1.10
53406858--53406882	7	3.6	7	100	0	50	52	0	0	48	1.00
53407124--53407182	21	2.6	22	78	19	68	57	1	0	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53407120--53407179	25	2.4	27	78	16	74	61	1	0	36	1.06
53407209--53407250	19	2.2	19	83	8	50	73	2	0	23	0.94
53420787--53420943	42	3.8	41	78	5	145	17	21	19	42	1.90
53428749--53428783	17	2.1	18	89	10	56	34	22	5	37	1.78
53429293--53429331	16	2.4	16	82	0	51	46	10	10	33	1.72
53437997--53438039	18	2.4	18	80	3	61	58	2	0	39	1.11
53447798--53447855	31	1.9	30	82	10	73	46	1	1	50	1.22
53459133--53459160	13	2.2	13	100	0	56	64	0	14	21	1.29
53459686--53459758	26	2.8	26	83	6	78	19	19	21	39	1.92
53462898--53462988	39	2.3	39	92	0	146	45	20	4	29	1.71
53467240--53467305	31	2.1	31	83	5	80	33	3	0	63	1.10
53467219--53467401	40	4.5	40	91	4	278	38	2	0	59	1.10
53467305--53467366	16	4.4	16	66	26	50	40	1	0	58	1.08
53468919--53468964	19	2.4	19	85	10	58	52	8	0	39	1.33
53468914--53468970	18	3.1	19	82	12	66	52	7	0	40	1.28
53491429--53491461	16	2.1	16	88	11	50	6	15	0	78	0.93
53493065--53493115	18	2.8	18	91	5	77	33	1	0	64	1.05
53493071--53493121	18	2.7	19	84	6	68	31	1	0	66	1.03
53493243--53493309	20	3.3	20	77	6	55	37	1	2	58	1.23
53497393--53497439	23	2.0	23	100	0	94	29	14	8	46	1.74
53505276--53505390	25	4.6	25	74	8	90	31	20	22	26	1.98
53505281--53505391	50	2.2	50	85	0	141	31	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53505697--53505735	16	2.5	15	84	15	53	35	15	0	48	1.45
53505704--53505737	16	2.1	17	94	5	61	29	20	0	50	1.49
53513503--53513563	31	2.0	31	86	0	86	29	24	11	34	1.91
53518899--53518960	30	2.1	30	93	0	106	56	14	3	25	1.53
53521319--53521357	3	13.0	3	94	0	69	33	2	0	64	1.08
53521408--53521478	35	2.0	35	88	0	106	39	12	1	46	1.51
53521497--53521581	44	2.0	43	85	2	116	34	14	4	47	1.65
53525085--53526154	534	2.0	534	98	0	2086	30	16	18	33	1.94
53526837--53526887	26	2.0	26	84	0	66	78	1	11	7	1.04
53527752--53527781	15	2.1	15	93	6	53	66	0	20	13	1.24
53529040--53529892	175	4.9	175	92	0	1388	31	17	20	29	1.96
53531518--53531559	3	14.0	3	94	0	75	33	2	0	64	1.07
53531604--53531681	36	2.1	37	85	2	104	41	15	1	42	1.55
53531684--53531785	44	2.3	44	77	6	98	37	12	2	47	1.57
53531703--53531786	44	1.9	43	85	2	114	35	14	2	47	1.57
53537059--53537088	10	2.9	10	95	5	51	20	3	0	76	0.92
53537975--53538039	28	2.3	28	75	0	67	26	0	23	50	1.49
53538595--53538639	20	2.2	21	84	4	56	13	2	20	64	1.38
53544467--53544494	13	2.2	13	100	0	56	42	0	7	50	1.30
53559679--53559709	16	1.9	16	93	0	53	77	6	3	12	1.08
53575481--53575578	23	4.3	23	93	2	171	32	26	20	20	1.97
53575481--53575578	45	2.2	46	92	3	171	32	26	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53575665--53575693	8	3.6	8	100	0	58	34	27	13	24	1.93
53578100--53578157	31	1.9	31	86	10	84	50	5	15	29	1.66
53578628--53578668	12	3.4	13	80	16	52	36	19	36	7	1.80
53582591--53582621	10	3.2	10	95	4	55	51	6	0	41	1.27
53585311--53585415	41	2.6	41	95	0	192	25	20	25	28	1.99
53588390--53588414	12	2.1	12	100	0	50	48	16	16	20	1.82
53589199--53589269	22	3.1	22	62	18	54	45	11	4	39	1.60
53589175--53589269	47	2.0	47	100	0	190	46	10	4	38	1.58
53589176--53589249	23	3.2	23	65	24	64	48	9	4	37	1.55
53589175--53589249	25	3.1	25	63	18	68	48	9	4	38	1.54
53589494--53589543	21	2.5	20	90	6	82	20	28	10	42	1.84
53592346--53592398	16	3.2	16	94	5	97	24	0	37	37	1.56
53592379--53592469	45	2.0	45	85	2	121	27	6	28	37	1.82
53592634--53592668	18	2.0	17	88	5	52	54	0	0	45	0.99
53592617--53593316	120	5.8	120	88	7	1037	48	4	2	44	1.37
53593109--53593166	16	3.7	15	86	6	80	51	0	0	48	1.00
53593093--53593166	31	2.4	31	84	10	91	51	1	0	47	1.09
53593114--53593176	18	3.8	18	74	23	57	50	1	0	47	1.10
53593142--53593286	47	3.2	46	72	16	156	49	3	2	44	1.30
53593140--53593262	44	2.7	43	71	17	106	48	2	2	46	1.28
53593264--53593297	16	2.1	16	89	10	52	50	5	0	44	1.26
53593538--53593668	66	2.0	66	93	0	226	35	20	10	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53598633--53598676	23	1.9	23	85	0	61	36	4	11	47	1.60
53598683--53598721	18	2.2	18	85	0	51	33	5	7	53	1.51
53600456--53600505	17	2.9	17	72	3	55	60	2	2	36	1.20
53600469--53600512	22	2.0	22	82	8	54	54	2	2	40	1.25
53604700--53604778	39	2.0	39	97	0	149	30	10	13	45	1.77
53610970--53611003	3	11.7	3	93	6	61	35	0	29	35	1.58
53613662--53613701	19	2.0	20	90	4	64	32	15	2	50	1.57
53627171--53627427	121	2.2	113	86	7	338	43	12	14	28	1.83
53627505--53628028	111	4.6	110	82	9	610	29	17	14	39	1.89
53628982--53629041	19	3.0	20	76	18	54	25	8	0	66	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211