genome.fa.s21.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  151  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47581360--47581402	22	1.9	23	85	4	61	60	2	0	37	1.10
47581365--47581540	38	4.3	40	70	17	132	53	3	1	42	1.25
47581312--47581771	222	2.1	221	93	2	780	52	4	1	42	1.29
47581607--47581671	18	4.2	16	72	18	57	60	0	1	38	1.07
47581634--47581671	18	2.2	17	90	4	58	63	0	2	34	1.09
47581592--47581780	59	3.2	59	71	10	186	53	3	1	41	1.25
47584914--47584984	28	2.5	28	100	0	142	60	4	2	32	1.30
47584960--47585084	49	2.6	48	76	12	123	60	3	6	30	1.38
47585590--47585729	21	6.8	21	71	17	73	34	5	0	60	1.24
47585634--47585732	10	9.7	10	72	12	60	32	4	0	63	1.13
47585690--47585758	33	2.1	33	91	0	111	36	2	0	60	1.11
47585721--47585768	21	2.3	21	85	7	62	31	2	2	64	1.16
47598656--47598685	15	2.0	15	100	0	60	13	46	6	33	1.69
47599484--47599546	31	2.0	31	100	0	126	26	9	38	25	1.87
47610329--47610597	134	2.0	134	97	0	511	20	16	29	33	1.95
47611950--47611983	17	1.9	18	88	5	52	41	0	23	35	1.55
47612269--47612355	39	2.3	37	79	11	97	48	1	19	31	1.57
47620729--47620933	43	4.8	43	85	1	252	31	25	16	26	1.96
47623693--47623784	48	1.9	48	82	8	116	36	4	4	54	1.40
47623742--47623782	20	2.0	21	90	4	66	34	4	0	60	1.18
47629909--47629942	17	1.9	18	88	5	52	41	0	23	35	1.55
47629955--47630005	25	2.0	26	84	3	68	43	0	9	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47630241--47630313	37	2.0	36	83	2	92	43	0	23	32	1.54
47630404--47630513	37	2.8	38	73	8	87	20	20	27	31	1.97
47632259--47632358	42	2.4	42	94	0	173	37	15	28	20	1.92
47640652--47640699	11	4.8	10	78	17	55	66	0	2	31	1.03
47640658--47640699	21	2.0	22	85	4	59	64	0	2	33	1.07
47658983--47659032	18	2.8	18	81	6	57	42	4	24	30	1.73
47671876--47671929	19	2.8	19	78	10	56	61	1	1	35	1.18
47671918--47671959	18	2.3	19	80	12	52	69	4	4	21	1.26
47680545--47680608	31	2.1	31	100	0	128	34	31	3	31	1.73
47684502--47684599	41	2.4	41	91	0	160	22	27	23	26	1.99
47688656--47688713	28	2.1	28	84	12	75	51	0	1	46	1.11
47689017--47689067	24	2.1	24	85	0	66	37	3	3	54	1.37
47692741--47692808	30	2.3	29	82	2	82	47	1	7	44	1.40
47694608--47694671	13	4.9	13	84	7	94	31	6	25	37	1.81
47696718--47696884	72	2.3	72	86	3	230	55	14	5	24	1.62
47697313--47697378	18	3.7	18	95	0	114	37	12	15	34	1.84
47699563--47699603	20	2.0	22	85	9	59	43	0	2	53	1.13
47699680--47699763	27	3.1	27	89	0	123	32	21	28	17	1.96
47699776--47700071	19	15.3	19	69	23	138	30	0	13	55	1.41
47699779--47700052	101	2.6	101	89	5	395	30	0	13	55	1.41
47699981--47700057	27	3.0	27	85	11	117	29	0	15	54	1.42
47699780--47700076	42	7.1	41	68	20	154	30	0	13	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47700064--47700185	60	2.0	60	88	3	183	31	0	13	54	1.45
47704189--47704227	21	1.9	20	89	5	60	58	0	15	25	1.37
47704783--47704834	24	2.3	23	74	16	54	26	1	5	65	1.26
47705666--47705752	21	4.2	21	89	7	142	27	0	13	58	1.36
47705665--47705747	40	2.1	40	97	0	157	28	0	14	56	1.39
47705740--47705860	59	2.0	60	87	4	174	33	0	12	53	1.44
47705977--47706011	16	2.3	15	95	5	61	34	2	5	57	1.37
47707338--47707394	27	2.1	27	83	0	69	24	33	22	19	1.97
47707847--47707884	18	2.1	19	90	5	60	47	0	2	50	1.15
47719093--47719140	15	3.1	15	88	11	78	37	0	6	56	1.25
47719093--47719138	17	2.8	17	93	6	78	36	0	6	56	1.25
47719167--47719222	15	4.0	13	80	19	60	37	0	1	60	1.07
47719167--47719210	13	3.1	15	79	20	51	36	0	0	63	0.95
47719167--47719225	28	2.0	30	84	12	79	37	0	1	61	1.07
47719223--47719456	56	4.1	54	71	16	168	43	0	4	51	1.27
47719216--47719406	57	3.2	61	73	16	216	42	1	4	51	1.28
47719268--47719421	18	8.9	18	66	18	76	42	0	2	54	1.19
47719116--47719288	87	2.0	87	91	3	265	39	1	5	53	1.31
47719181--47719450	120	2.2	120	95	0	477	42	0	4	52	1.25
47719317--47719403	38	2.3	38	79	15	99	43	1	4	50	1.30
47719564--47719659	45	2.2	44	86	5	131	36	29	3	31	1.73
47720525--47720569	9	5.1	9	82	15	58	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47720724--47720751	4	7.0	4	100	0	56	50	0	0	50	1.00
47721634--47721668	3	11.7	3	93	0	61	37	0	0	62	0.95
47733229--47733289	26	2.3	26	91	5	97	44	22	0	32	1.54
47733693--47733774	36	2.3	36	87	2	121	37	25	7	29	1.83
47736582--47736653	23	3.0	23	81	4	72	38	25	19	16	1.92
47740825--47741085	101	2.6	101	98	0	504	30	30	16	21	1.96
47741915--47741959	19	2.3	20	85	14	60	77	0	4	17	0.92
47749995--47750024	15	2.0	15	100	0	60	13	6	13	66	1.43
47753526--47753583	29	1.9	29	83	13	73	55	0	1	43	1.10
47756238--47756335	49	2.0	50	85	2	135	46	8	16	28	1.75
47772026--47772066	21	1.9	22	95	5	75	26	4	2	65	1.25
47772026--47772076	20	2.5	20	87	12	68	27	5	1	64	1.27
47772057--47772162	29	3.8	28	74	12	74	33	1	1	63	1.16
47772360--47772529	92	1.9	89	80	3	196	34	11	20	34	1.88
47772891--47772916	3	8.7	3	100	0	52	30	34	0	34	1.58
47773588--47773621	16	2.1	16	94	0	59	23	52	8	14	1.69
47775217--47775249	15	2.2	15	94	0	57	39	6	21	33	1.78
47775342--47775389	17	2.9	16	81	12	62	54	29	0	16	1.43
47775342--47775389	15	2.9	17	78	12	64	54	29	0	16	1.43
47775342--47775398	16	3.5	16	79	11	62	50	28	0	21	1.48
47775997--47776025	15	2.0	15	93	6	51	51	0	0	48	1.00
47776237--47776296	26	2.5	23	79	15	59	30	3	13	53	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47776257--47776303	24	2.0	24	83	8	60	34	4	8	53	1.51
47776546--47776647	31	3.3	30	70	8	80	35	20	2	41	1.68
47777413--47777452	20	1.9	22	85	10	57	55	0	0	45	0.99
47781844--47781953	49	2.2	49	76	6	114	27	19	25	28	1.98
47787893--47788172	86	3.3	86	79	0	290	40	20	17	22	1.92
47787893--47788174	43	6.6	43	75	0	195	40	20	17	22	1.92
47801356--47801764	27	15.3	27	82	1	430	37	23	17	22	1.94
47801930--47801984	26	2.1	26	86	0	74	21	18	21	38	1.94
47802094--47802151	28	2.1	28	93	3	100	20	22	25	31	1.98
47802116--47802184	33	2.1	34	83	2	86	21	21	26	30	1.99
47815987--47816048	31	2.0	31	96	0	115	41	9	11	37	1.74
47820166--47820263	28	3.5	27	81	9	117	31	12	27	28	1.93
47821188--47821399	22	9.1	22	74	16	169	28	12	15	43	1.82
47821188--47821396	47	4.4	47	89	0	310	29	12	15	43	1.83
47821190--47821444	141	1.8	141	81	3	325	29	12	15	42	1.84
47824908--47824935	3	9.3	3	100	0	56	67	32	0	0	0.91
47831856--47831907	20	2.5	21	81	15	63	25	5	3	65	1.32
47848947--47849022	23	3.3	23	87	7	109	40	21	17	21	1.91
47848930--47849022	46	2.0	46	82	0	114	38	21	18	21	1.93
47849977--47850006	14	2.1	14	100	0	60	20	6	0	73	1.05
47853959--47854001	16	2.6	17	85	10	54	0	58	0	41	0.98
47853976--47854018	16	2.7	16	88	0	68	2	51	2	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47854188--47854245	15	4.0	14	86	6	62	18	1	3	75	1.03
47856347--47856387	19	2.0	21	90	9	68	43	4	9	41	1.59
47856352--47856391	19	2.1	19	100	0	80	42	5	10	42	1.60
47856539--47856585	4	11.5	4	84	11	60	74	2	2	21	1.03
47858075--47858192	44	2.7	43	84	7	148	32	22	16	28	1.95
47858354--47858859	87	5.8	87	91	0	814	25	23	22	29	1.99
47860498--47860534	17	2.1	18	90	5	58	5	16	5	72	1.21
47860492--47860534	18	2.2	19	88	12	61	6	16	6	69	1.32
47860510--47860552	22	2.0	22	85	0	59	4	11	4	79	1.04
47860543--47860576	18	1.9	17	88	5	50	8	2	8	79	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211