Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  40  of  211  ( 25274 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11886507--11886613
50
2.1
50
82
0
124
21
28
13
37
1.91
11898968--11899590
130
4.8
130
85
3
745
31
16
13
38
1.88
11905922--11905979
23
2.5
23
80
2
62
31
1
3
63
1.21
11908783--11908811
1
29.0
1
100
0
58
100
0
0
0
0.00
11912440--11912513
38
1.9
38
94
0
130
47
14
2
35
1.59
11917348--11917506
21
7.6
21
75
8
135
45
16
21
16
1.86
11917351--11917507
42
3.7
42
80
8
185
45
16
21
16
1.85
11917351--11917507
84
1.9
84
84
7
212
45
16
21
16
1.85
11921163--11921197
13
2.6
13
90
4
52
68
0
0
31
0.90
11922267--11922301
18
2.0
17
88
5
52
22
0
5
71
1.07
11924970--11925013
23
1.9
24
90
9
74
54
0
20
25
1.45
11925323--11925414
37
2.5
36
79
8
96
45
1
21
31
1.59
11930267--11930304
18
2.1
18
85
9
51
36
2
0
60
1.11
11936206--11936266
26
2.3
26
80
5
70
31
4
3
60
1.34
11936205--11936267
27
2.4
25
77
12
65
33
4
3
58
1.35
11936559--11936744
40
4.4
41
75
14
146
39
18
22
19
1.93
11936640--11936742
49
2.1
50
94
1
181
40
20
22
16
1.91
11936783--11937002
41
5.4
41
92
1
336
17
18
30
33
1.94
11937177--11937231
27
2.1
27
83
6
69
12
34
7
45
1.70
11940726--11940924
43
4.8
43
76
13
200
26
16
28
28
1.97
11940727--11940886
79
2.0
79
87
2
232
26
15
28
29
1.96
11944913--11944951
10
4.2
9
84
15
53
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11946831--11946865
17
2.0
17
88
5
52
65
2
0
31
1.07
11946840--11946872
17
2.0
17
88
5
50
63
3
0
33
1.10
11947391--11947767
125
3.0
124
90
1
576
31
14
22
31
1.94
11949479--11949741
21
12.0
21
78
12
280
26
0
26
46
1.56
11949498--11949741
44
5.5
44
90
2
366
26
0
27
45
1.57
11949498--11949741
89
2.8
88
89
3
359
26
0
27
45
1.57
11949498--11949741
133
1.9
129
91
3
373
26
0
27
45
1.57
11949790--11949916
25
5.3
24
72
15
104
45
12
0
41
1.42
11949792--11949926
70
1.9
69
96
1
252
47
11
0
40
1.40
11951193--11951236
20
2.1
21
84
12
56
50
6
0
43
1.29
11952127--11952169
11
3.8
11
78
6
50
60
0
0
39
0.97
11952404--11952538
63
2.1
63
95
0
243
17
29
28
24
1.97
11963263--11963300
19
2.0
19
94
0
67
39
13
0
47
1.42
11975895--11975965
35
2.0
35
97
0
133
22
28
22
26
1.99
11977566--11977590
3
8.3
3
100
0
50
32
0
0
68
0.90
11979319--11979386
16
4.2
16
96
0
118
27
0
36
35
1.58
11979367--11979461
45
2.1
44
88
1
136
34
5
27
32
1.79
11979623--11979657
18
2.0
17
88
5
52
54
0
0
45
0.99
11979581--11979653
27
2.7
27
76
8
76
52
2
0
45
1.15
11979542--11979813
144
1.9
147
93
3
478
46
3
2
46
1.35
11979750--11979983
129
1.8
130
94
0
416
49
6
2
42
1.40
11979896--11979930
18
2.0
17
88
5
52
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11979971--11980017
17
2.9
16
78
18
53
46
2
6
44
1.40
11979990--11980023
17
2.0
17
94
0
59
50
0
5
44
1.26
11980056--11980249
92
2.1
91
88
5
284
46
4
4
44
1.41
11983850--11983880
15
2.1
15
100
0
62
45
0
19
35
1.51
11988400--11988431
12
2.8
12
90
9
50
78
0
6
15
0.95
11989477--11989527
26
1.9
26
88
4
75
13
9
3
72
1.24
11992249--11992281
13
2.6
13
85
4
50
42
3
15
39
1.62
11998883--11998950
18
3.9
17
72
16
59
64
2
1
30
1.17
11998882--11998923
9
4.7
9
80
8
50
59
2
0
38
1.10
11998882--11998958
19
4.4
17
69
18
59
63
2
1
32
1.16
11998865--11998967
27
3.8
26
71
18
86
64
1
1
32
1.16
12000140--12000198
30
2.0
30
86
0
82
42
6
18
32
1.77
12000539--12000770
50
4.5
50
76
9
157
28
19
26
24
1.99
12000985--12001026
16
2.6
16
84
0
57
52
7
26
14
1.67
12010120--12010259
63
2.2
63
80
2
156
22
27
22
27
1.99
12014362--12014416
9
6.1
9
80
0
65
30
7
12
49
1.68
12014577--12014639
24
2.6
24
79
0
72
49
20
11
19
1.78
12014646--12014718
30
2.5
29
80
6
85
38
26
13
21
1.91
12017365--12017431
9
7.4
9
86
0
80
25
7
25
41
1.81
12017365--12017432
18
3.8
18
84
7
93
25
7
25
42
1.80
12022998--12023045
25
1.9
25
91
0
78
33
6
25
35
1.81
12028271--12028319
2
24.5
2
100
0
98
51
48
0
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12030442--12030532
9
9.9
9
67
17
53
39
0
2
58
1.10
12030423--12030532
19
5.8
19
70
17
77
37
0
4
58
1.19
12030442--12030518
36
2.1
37
81
11
88
40
0
1
58
1.06
12030553--12030577
12
2.1
12
100
0
50
16
8
0
76
1.02
12030563--12030595
17
1.9
17
88
11
50
24
3
0
72
0.98
12031168--12031221
20
2.7
20
85
8
65
55
7
0
37
1.28
12031840--12031877
18
2.1
19
85
14
53
10
13
0
76
1.02
12031840--12031877
17
2.1
19
85
9
53
10
13
0
76
1.02
12034440--12034474
18
1.9
18
88
0
52
62
8
0
28
1.24
12039069--12039096
14
2.0
14
100
0
56
35
14
7
42
1.73
12043993--12044034
22
1.9
22
100
0
84
38
26
4
30
1.77
12045653--12045696
11
3.9
11
85
5
52
34
2
0
63
1.07
12050054--12050160
12
8.7
13
70
19
61
51
8
14
25
1.71
12050059--12050127
24
3.0
21
82
16
68
49
10
15
24
1.76
12050083--12050127
23
2.0
22
87
8
65
51
11
15
22
1.75
12050121--12050176
27
2.1
27
83
6
69
58
8
12
19
1.60
12051568--12051625
6
9.5
6
80
10
55
77
0
3
18
0.91
12051568--12051606
13
3.1
13
88
3
62
79
0
2
17
0.84
12051569--12051612
16
2.7
17
86
13
58
79
0
4
15
0.89
12058430--12058515
13
6.9
13
68
23
51
52
9
13
24
1.70
12058438--12058482
23
2.0
22
87
8
65
51
11
15
22
1.75
12058400--12058501
25
4.2
25
69
15
79
52
8
12
25
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12058476--12058531
27
2.1
27
83
6
69
58
8
12
19
1.60
12060932--12060966
18
1.9
18
88
0
52
60
8
8
22
1.54
12067154--12067212
26
2.3
25
85
2
73
32
20
6
40
1.78
12067376--12067423
6
8.0
6
95
0
87
16
18
0
64
1.29
12072368--12072418
21
2.4
21
83
0
66
31
7
29
31
1.86
12076262--12076294
15
2.2
15
89
10
50
54
0
0
45
0.99
12077691--12077728
20
1.9
20
88
0
58
71
2
7
18
1.23
12078331--12078372
22
2.0
21
85
4
57
19
2
7
71
1.20
12078332--12078399
23
2.9
24
75
18
63
19
1
7
72
1.16
12078368--12078415
18
2.7
18
83
6
53
20
0
8
70
1.12
12079066--12079095
11
2.8
11
95
5
53
66
10
16
6
1.41
12082418--12082450
7
4.7
7
100
0
66
27
0
15
57
1.38
12083074--12083116
18
2.4
18
88
0
59
18
27
9
44
1.80
12084969--12085000
15
2.1
15
94
0
55
50
31
0
18
1.48
12085513--12085555
20
2.2
20
87
8
61
27
0
0
72
0.85
12085717--12085747
16
1.9
16
100
0
62
19
51
16
12
1.76
12086042--12086706
103
6.8
95
78
15
538
27
0
12
58
1.38
12086150--12086722
195
3.0
195
85
7
698
28
0
12
57
1.39
12087804--12087878
39
1.9
40
89
5
118
64
0
1
34
1.02
12092729--12092777
25
1.9
26
84
12
66
59
10
2
28
1.41
12099977--12100017
6
6.8
6
85
0
55
14
17
14
53
1.73
12099978--12100017
18
2.2
18
90
0
62
12
17
15
55
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12103335--12103472
43
3.3
43
73
8
120
31
16
22
28
1.96
12109585--12109659
36
2.1
36
97
0
141
60
5
17
17
1.54
12109585--12109643
16
3.1
21
68
25
58
61
5
16
16
1.52
12109593--12109651
17
3.4
17
68
25
50
59
5
16
18
1.55
12113055--12113080
8
3.2
8
100
0
52
53
0
34
11
1.37
12113962--12114114
43
3.6
43
78
8
152
26
16
27
29
1.97
12129986--12130017
3
10.7
3
100
0
64
31
34
0
34
1.58
12136391--12136554
10
17.2
9
66
20
59
61
3
1
34
1.19
12136450--12136511
27
2.3
27
91
0
97
64
4
0
30
1.14
12136450--12136519
8
8.2
8
72
12
50
65
4
0
30
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211