genome.fa.s21.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  134  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42519867--42520058	88	2.1	91	80	4	221	32	6	6	54	1.52
42520053--42520091	19	2.0	20	90	5	62	30	10	5	53	1.56
42520079--42520122	21	2.1	21	95	0	79	31	11	0	56	1.35
42521983--42522013	16	1.9	16	100	0	62	22	0	0	77	0.77
42529426--42529460	17	2.1	17	88	0	52	68	2	0	28	1.04
42530266--42530297	16	2.0	16	93	0	55	37	0	34	28	1.57
42530536--42530569	17	2.0	17	100	0	68	58	0	0	41	0.98
42541261--42541840	84	6.8	87	80	8	583	43	12	11	32	1.78
42541212--42541748	253	2.1	253	88	1	801	44	12	11	31	1.78
42541199--42541840	86	7.6	86	78	8	572	43	12	11	32	1.79
42541212--42541868	253	2.6	252	83	5	717	43	12	12	32	1.79
42541802--42541998	79	2.5	79	82	4	254	37	12	18	31	1.87
42541786--42542569	389	2.0	389	99	0	1559	39	11	15	33	1.83
42542191--42542387	79	2.5	79	81	3	252	38	12	17	31	1.87
42546898--42547473	107	5.5	106	85	7	670	26	0	14	58	1.42
42546898--42547387	211	2.3	212	86	5	677	25	1	14	59	1.41
42547181--42547473	103	3.0	99	89	5	409	27	0	13	58	1.39
42547700--42547752	22	2.5	21	80	14	56	30	7	3	58	1.43
42552117--42552192	37	2.1	37	100	0	152	23	25	2	48	1.64
42553071--42553119	25	1.9	26	84	12	66	59	10	2	28	1.41
42552861--42553127	115	2.4	107	77	12	306	56	13	2	26	1.50
42553103--42553148	11	4.3	11	81	15	51	67	8	0	23	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42553336--42553408	27	2.7	27	89	0	110	24	24	27	23	2.00
42553358--42553415	27	2.1	27	83	0	71	25	34	22	17	1.96
42553589--42553644	29	1.9	29	96	0	103	30	23	7	39	1.81
42554723--42554764	22	1.9	22	85	0	57	23	26	23	26	2.00
42556759--42556959	51	4.0	52	78	7	216	29	27	17	24	1.98
42556759--42556951	102	1.9	102	87	3	273	29	26	18	24	1.98
42559616--42559671	29	2.0	27	86	6	76	53	8	8	28	1.62
42559616--42559671	28	2.0	29	85	3	78	53	8	8	28	1.62
42566660--42566881	108	2.1	108	88	5	333	33	17	16	31	1.93
42567843--42567873	3	10.3	3	100	0	62	67	0	0	32	0.91
42572117--42572245	34	3.8	34	84	0	159	27	15	14	41	1.86
42572117--42572243	68	1.9	68	89	0	200	28	15	14	41	1.86
42573773--42573873	45	2.2	45	85	0	130	27	12	17	41	1.86
42578854--42578905	24	2.2	24	82	0	59	9	13	3	73	1.23
42580973--42581044	32	2.2	32	97	0	135	23	43	18	15	1.88
42583563--42583610	19	2.5	20	86	10	64	33	0	10	56	1.34
42583753--42583806	23	2.3	23	100	0	108	24	14	16	44	1.85
42590070--42590324	127	2.0	127	99	0	503	41	11	3	43	1.57
42592061--42592114	24	2.2	24	86	0	72	51	7	3	37	1.48
42595989--42596114	43	2.9	42	81	12	148	19	19	29	30	1.97
42596952--42597118	23	7.1	23	72	6	147	25	18	14	41	1.89
42596952--42597124	47	3.7	47	96	0	310	24	17	15	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42596958--42597149	94	2.0	94	90	0	303	25	17	16	41	1.89
42597179--42597262	23	3.5	25	78	15	81	32	13	19	35	1.90
42597083--42597262	71	2.5	73	77	7	192	30	15	17	37	1.90
42599678--42599729	24	2.2	24	89	0	77	50	9	3	36	1.54
42601367--42601412	20	2.3	19	82	10	56	23	2	2	71	1.08
42601349--42601440	18	4.8	20	73	15	61	26	2	5	66	1.25
42602478--42602691	91	2.4	91	96	1	387	26	20	18	35	1.95
42602746--42603007	100	2.5	103	86	8	343	38	14	18	28	1.90
42606654--42606749	34	2.9	33	80	10	110	43	6	6	43	1.54
42609067--42609112	9	5.3	9	74	10	51	39	10	8	41	1.71
42609071--42609121	25	2.0	26	84	3	68	41	9	5	43	1.62
42609176--42609225	20	2.5	19	80	6	55	34	24	8	34	1.84
42609397--42609464	23	3.0	23	89	4	102	33	22	25	19	1.97
42609374--42609464	23	3.8	22	83	12	101	31	23	24	20	1.98
42612393--42612809	126	3.3	126	94	0	719	25	21	19	32	1.97
42612842--42613071	96	2.4	97	81	5	270	40	18	3	38	1.66
42614456--42614497	11	3.8	11	84	15	52	80	0	16	2	0.81
42620438--42620836	73	5.8	69	78	13	412	61	2	7	29	1.35
42620624--42620658	13	2.6	13	95	4	61	71	0	0	28	0.86
42620438--42620836	69	5.8	70	74	14	348	61	2	7	29	1.35
42620636--42620767	58	2.2	59	88	6	196	62	0	6	29	1.26
42620444--42620845	131	3.0	129	83	7	425	61	2	6	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42624489--42624519	5	6.4	5	92	7	55	80	0	0	19	0.71
42624928--42624992	26	2.6	25	73	22	64	49	3	10	36	1.53
42626023--42626063	20	2.0	20	86	9	57	12	9	60	17	1.57
42626093--42626182	46	2.0	46	93	0	153	7	11	37	43	1.69
42626798--42626938	44	3.2	43	78	4	149	25	22	21	30	1.99
42639202--42639232	5	6.4	5	92	7	55	80	0	0	19	0.71
42639641--42639705	26	2.6	25	73	22	64	49	3	10	36	1.53
42640736--42640776	20	2.0	20	86	9	57	12	9	60	17	1.57
42640806--42640895	46	2.0	46	93	0	153	7	11	37	43	1.69
42644435--42644465	15	2.0	16	93	6	55	38	3	0	58	1.15
42644480--42644529	16	3.2	16	70	18	52	50	2	0	48	1.12
42652414--42652462	26	1.9	25	87	4	71	63	4	0	32	1.13
42652858--42652918	32	1.9	32	93	0	104	6	37	26	29	1.81
42654133--42654174	15	2.8	15	96	0	75	30	11	2	54	1.49
42656068--42656094	13	2.1	13	100	0	54	29	7	22	40	1.81
42679828--42679877	23	2.2	23	82	7	57	44	6	6	44	1.53
42688646--42688788	71	2.0	71	94	0	250	27	15	27	29	1.96
42689475--42689524	24	2.0	24	88	7	73	62	2	0	36	1.07
42689475--42689548	26	2.9	25	82	7	78	58	4	0	37	1.17
42690464--42690488	13	1.9	13	100	0	50	44	0	0	56	0.99
42690448--42690499	16	3.2	16	72	10	52	40	0	0	59	0.97
42699394--42699431	18	2.1	18	100	0	76	21	10	42	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42700889--42700957	26	2.7	26	86	4	104	24	27	20	27	1.99
42707750--42707798	15	3.1	16	85	5	55	77	0	2	20	0.87
42707759--42707798	10	3.8	11	90	6	57	77	0	0	22	0.77
42707766--42707798	5	6.6	5	100	0	66	81	0	0	18	0.68
42716987--42717237	67	3.7	68	80	7	219	30	27	15	26	1.96
42717012--42717237	69	3.3	67	80	6	242	29	26	16	26	1.97
42718549--42718635	41	2.1	41	93	0	147	20	25	24	29	1.99
42719990--42720043	27	2.0	27	96	0	99	50	3	5	40	1.44
42720320--42720456	69	2.0	69	86	2	195	30	29	15	24	1.95
42720423--42720662	103	2.3	103	87	0	336	30	22	19	27	1.98
42720423--42720712	103	2.8	105	81	5	261	30	21	18	29	1.97
42727716--42727757	19	2.2	19	83	8	50	4	11	2	80	0.95
42732563--42732597	18	2.0	17	88	5	52	40	2	2	54	1.30
42733518--42733558	5	8.2	5	88	0	64	75	2	2	19	1.03
42733945--42734006	2	31.0	2	74	6	54	54	0	4	40	1.22
42734178--42734205	3	9.3	3	100	0	56	67	0	0	32	0.91
42734806--42735574	385	2.0	385	99	0	1529	22	18	24	35	1.96
42735807--42735907	39	2.6	39	79	9	116	33	21	20	23	1.97
42735876--42736118	44	5.7	42	74	9	181	27	21	18	31	1.97
42737879--42737957	14	5.3	14	76	16	70	16	1	8	73	1.15
42737879--42737964	31	2.8	32	84	10	108	17	1	8	73	1.14
42737879--42737964	15	5.7	15	76	14	79	17	1	8	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42737879--42737958	16	5.2	16	73	16	71	16	1	8	73	1.14
42742692--42742727	5	7.2	5	87	0	54	75	2	2	19	1.06
42743107--42743159	2	26.0	2	76	3	52	54	0	3	41	1.18
42743316--42743358	3	14.3	3	95	0	77	65	0	2	32	1.06
42744574--42744635	16	3.9	16	85	4	81	25	29	4	40	1.76
42751167--42751206	21	1.9	21	90	10	64	27	15	25	32	1.95
42757114--42757159	23	2.0	23	91	0	74	34	6	19	39	1.78
42763385--42763411	13	2.1	13	100	0	54	55	14	7	22	1.64
42768044--42768574	265	2.0	265	99	0	1053	33	13	11	41	1.80
42772111--42772164	23	2.3	23	78	12	56	24	14	0	61	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211