genome.fa.s21.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  130  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41284444--41284503	3	20.0	3	79	6	68	0	36	0	63	0.95
41284445--41284496	21	2.5	21	90	0	77	0	38	0	61	0.96
41284444--41284503	27	2.2	27	93	0	102	0	36	0	63	0.95
41286977--41287009	17	2.0	17	88	5	50	57	3	3	36	1.29
41288154--41288181	12	2.3	12	100	0	56	7	7	0	85	0.73
41288145--41288192	20	2.4	20	86	6	62	6	12	0	81	0.87
41297430--41297484	27	2.0	27	96	0	101	25	20	7	47	1.75
41298929--41298984	25	2.2	26	79	17	73	62	1	1	33	1.16
41310164--41310256	37	2.5	37	87	1	125	41	30	10	17	1.83
41310647--41310701	23	2.3	24	93	3	94	30	16	1	50	1.55
41310651--41310690	13	3.3	13	73	20	50	30	17	0	52	1.45
41316547--41316603	25	2.3	25	75	0	60	24	7	12	56	1.61
41317696--41318184	114	4.3	113	83	8	564	26	21	26	25	2.00
41317696--41318184	113	4.3	114	83	8	597	26	21	26	25	2.00
41318104--41318181	41	1.9	41	89	0	120	21	21	29	26	1.99
41318429--41318459	15	2.1	15	93	0	53	19	0	45	35	1.51
41318763--41318811	7	6.9	7	76	4	53	20	0	46	32	1.51
41318759--41318826	15	4.7	15	80	10	63	22	0	44	33	1.53
41318329--41318824	268	1.8	263	83	7	649	28	1	28	40	1.67
41318910--41318948	3	12.7	3	94	5	69	66	0	2	30	1.05
41319147--41319191	23	2.0	23	86	0	63	53	0	8	37	1.32
41319414--41320603	146	8.1	146	93	1	1983	44	14	15	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41320142--41320180	21	1.9	20	89	5	60	74	0	0	25	0.82
41320876--41320905	15	2.0	15	100	0	60	33	33	13	20	1.91
41322171--41322203	16	2.1	16	100	0	66	24	18	6	51	1.68
41325058--41325100	13	3.3	13	80	0	50	55	4	2	37	1.33
41326617--41326782	43	3.8	44	80	4	176	23	20	28	27	1.99
41326641--41326782	43	3.3	43	85	0	185	21	19	29	29	1.98
41333663--41333914	128	2.0	128	99	0	495	36	13	20	29	1.90
41355925--41355957	16	2.1	16	94	0	57	78	0	15	6	0.93
41359043--41359081	17	2.3	17	86	8	53	38	0	20	41	1.53
41359730--41359805	19	3.9	20	79	10	95	6	27	22	43	1.78
41359736--41359810	38	1.9	39	91	2	125	8	28	21	42	1.81
41367092--41367124	12	2.8	12	95	0	57	21	33	12	33	1.90
41371743--41371775	12	2.8	12	95	0	57	21	33	12	33	1.90
41376379--41376427	24	2.0	24	81	14	57	51	2	0	46	1.12
41378981--41379197	51	4.3	51	92	0	353	27	26	15	30	1.96
41382262--41382320	30	2.0	30	96	0	109	44	23	3	28	1.70
41384196--41384239	12	3.7	12	84	6	54	75	0	0	25	0.81
41387167--41387198	2	16.0	2	100	0	64	0	50	0	50	1.00
41389813--41389839	12	2.2	12	100	0	54	40	18	7	33	1.78
41391352--41391425	28	2.6	28	95	0	130	31	9	28	31	1.89
41391352--41391447	28	3.4	28	88	0	120	30	10	28	31	1.90
41392184--41392772	93	6.3	93	97	0	1097	28	13	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41392191--41392819	23	26.7	27	68	20	168	28	13	17	40	1.88
41399592--41399640	25	2.0	25	87	0	71	34	16	12	36	1.86
41399598--41399655	25	2.3	25	84	0	71	37	15	10	36	1.82
41406220--41406288	32	2.2	30	84	7	84	52	10	5	31	1.59
41409533--41409581	4	12.5	4	79	12	57	71	2	2	24	1.07
41410042--41410092	26	2.1	26	82	10	63	50	0	7	41	1.31
41410039--41410095	29	2.0	29	86	6	80	49	0	8	42	1.34
41410079--41410115	3	12.3	3	100	0	74	67	0	0	32	0.91
41411423--41411534	43	2.6	44	85	1	136	31	21	16	30	1.96
41411423--41411538	44	2.7	43	86	1	142	31	20	17	31	1.96
41411563--41412028	132	3.5	132	90	2	706	31	24	15	28	1.96
41411563--41412031	44	10.7	44	76	9	402	31	24	15	28	1.96
41422955--41423030	38	2.0	38	100	0	152	18	18	18	44	1.87
41426753--41426803	25	2.0	25	81	7	59	50	0	7	41	1.31
41426750--41426813	34	2.0	34	87	9	98	51	0	7	40	1.31
41429925--41430004	41	2.0	41	84	0	106	40	30	15	15	1.87
41430016--41430102	38	2.3	38	95	0	156	33	34	22	9	1.86
41430003--41430086	22	4.1	22	66	17	63	33	34	20	11	1.89
41433447--41433487	18	2.2	19	91	4	66	60	0	0	39	0.96
41437892--41437948	16	2.8	22	63	31	54	38	0	0	61	0.96
41439144--41439184	18	2.2	19	86	4	57	56	14	0	29	1.39
41440905--41441013	10	11.5	10	68	21	65	59	0	0	39	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41440903--41440982	20	4.3	20	76	17	84	58	0	0	41	0.98
41440936--41440990	26	2.2	26	86	3	76	60	0	0	40	0.97
41440890--41440992	35	2.8	36	75	22	99	63	0	0	36	0.95
41440887--41441013	9	13.7	9	70	15	71	62	0	0	36	1.01
41440971--41441011	19	2.2	18	86	4	55	65	2	0	31	1.05
41440954--41441021	29	2.4	29	83	11	79	64	1	0	33	1.02
41441895--41441949	19	2.8	20	78	10	60	25	9	1	63	1.34
41442023--41442069	18	2.5	19	77	16	53	23	6	2	68	1.24
41441985--41442071	36	2.3	39	76	11	92	32	3	2	62	1.25
41442064--41442110	19	2.4	19	85	3	58	34	2	2	61	1.20
41441953--41442110	19	8.3	18	67	19	56	32	3	1	61	1.25
41444763--41444831	31	2.2	33	82	10	81	44	0	4	50	1.21
41444780--41444850	33	2.3	31	81	13	83	47	1	1	49	1.18
41444798--41444865	21	3.3	19	78	15	64	50	1	2	45	1.26
41447860--41447958	37	2.6	38	96	3	191	63	0	2	34	1.06
41447893--41447954	18	3.4	18	67	20	56	64	0	1	33	1.03
41453837--41453882	17	2.8	18	84	15	64	28	41	30	0	1.56
41456379--41456587	92	2.3	91	85	5	260	44	3	4	46	1.42
41456610--41457255	120	5.4	120	96	1	1172	43	2	4	48	1.38
41456724--41456758	18	2.0	17	88	5	52	45	0	0	54	0.99
41456844--41456878	18	2.0	17	88	5	52	45	0	0	54	0.99
41457084--41457118	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41457204--41457238	18	2.0	17	88	5	52	45	0	0	54	0.99
41457403--41457493	45	2.0	45	85	2	121	37	28	6	27	1.82
41457474--41457542	16	4.2	16	90	3	111	36	36	1	26	1.66
41457474--41457542	33	2.1	32	91	2	111	36	36	1	26	1.66
41465882--41465998	39	3.0	39	91	2	189	39	23	5	32	1.76
41466011--41466152	39	3.7	38	74	7	124	46	16	4	33	1.66
41466220--41466268	21	2.3	21	85	0	62	42	2	4	51	1.32
41466231--41466270	21	1.9	21	94	0	71	42	0	2	55	1.13
41466231--41466294	21	3.0	20	82	13	67	37	3	3	56	1.31
41469896--41469925	15	2.0	15	100	0	60	53	13	6	26	1.64
41470120--41470153	3	11.3	3	100	0	68	32	0	0	67	0.91
41471588--41471733	31	5.0	30	72	22	116	58	0	1	40	1.07
41471588--41471693	53	2.0	52	87	8	153	56	0	0	42	1.05
41471588--41471766	42	4.3	41	80	10	179	58	0	2	39	1.11
41471588--41471764	84	2.1	83	85	9	236	58	0	2	38	1.10
41471604--41471773	41	4.1	41	68	9	94	61	0	2	35	1.09
41475290--41475328	18	2.2	18	86	4	53	61	7	0	30	1.24
41479184--41479214	15	2.1	15	93	0	53	48	9	0	41	1.36
41479321--41479509	61	3.2	56	75	12	173	51	4	3	40	1.39
41483768--41483887	44	2.8	42	79	16	138	28	29	20	22	1.98
41485799--41485839	20	2.0	20	100	0	82	46	0	9	43	1.36
41485799--41485848	20	2.5	20	90	6	66	46	0	12	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41486384--41486532	63	2.4	63	80	2	174	29	6	31	32	1.82
41490416--41490449	13	2.5	13	85	4	50	26	0	2	70	1.01
41495091--41495139	21	2.4	20	86	6	71	22	28	8	40	1.82
41495312--41495421	21	5.3	21	76	2	107	45	15	20	18	1.85
41495312--41495422	42	2.7	42	84	2	136	45	15	20	18	1.85
41497341--41497380	18	2.2	18	95	0	71	30	2	17	50	1.59
41504437--41504707	125	2.2	126	92	2	465	28	15	22	32	1.95
41507854--41508463	23	27.5	23	83	7	687	25	0	25	48	1.51
41507854--41508467	44	13.9	44	85	8	741	25	0	25	48	1.51
41507889--41508467	67	8.7	67	89	5	899	25	0	26	48	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211