genome.fa.s21.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  193  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59628661--59628700	17	2.4	16	87	4	53	47	2	0	50	1.14
59639806--59639835	2	15.0	2	100	0	60	50	0	50	0	1.00
59648590--59648654	26	2.5	26	87	2	94	40	20	20	20	1.92
59648590--59648663	26	2.8	25	82	8	85	36	21	22	18	1.95
59651641--59651725	36	2.3	36	86	6	118	8	23	10	57	1.59
59654829--59655036	91	2.3	91	88	0	308	46	3	4	46	1.39
59654867--59655011	44	3.2	43	69	19	116	46	2	3	48	1.31
59654864--59655004	47	3.1	46	67	20	114	45	2	3	48	1.31
59654951--59655011	28	2.2	28	85	5	81	45	0	3	50	1.17
59655186--59655227	15	2.7	16	82	14	52	45	0	2	52	1.13
59655177--59655218	15	2.9	15	82	10	52	47	0	0	52	1.00
59655434--59655485	16	3.2	16	88	0	86	38	32	0	28	1.57
59657046--59657126	30	2.6	31	75	14	78	41	0	3	54	1.18
59657327--59657359	16	1.9	18	88	11	52	18	0	3	78	0.87
59658583--59658638	17	3.4	16	73	14	51	67	5	0	26	1.11
59658591--59658637	17	2.8	17	80	6	60	72	6	0	21	1.07
59658623--59658695	26	2.7	27	85	8	87	65	5	0	28	1.14
59661021--59661293	109	2.4	111	83	7	329	23	22	28	25	1.99
59661183--59661348	74	2.3	73	83	1	206	22	22	28	27	1.99
59663180--59663370	52	3.8	52	84	5	225	30	28	15	25	1.96
59665043--59665082	14	2.8	14	88	3	53	32	0	32	35	1.58
59665188--59665478	97	3.0	95	81	7	325	29	1	26	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59666060--59666302	84	2.9	81	79	6	209	30	16	22	31	1.96
59666147--59666336	84	2.3	84	85	0	272	27	17	21	33	1.96
59667959--59668008	18	2.9	17	85	5	73	42	12	2	44	1.53
59667950--59668003	18	2.7	20	68	26	51	38	12	1	46	1.53
59667977--59668036	23	3.0	22	79	20	69	43	10	0	46	1.37
59668284--59668312	12	2.4	12	100	0	58	48	10	0	41	1.37
59668308--59668632	9	37.4	9	66	18	120	48	19	1	30	1.59
59668337--59668540	16	13.4	16	64	23	75	49	20	1	28	1.57
59668309--59668461	25	6.2	24	70	18	93	47	20	1	29	1.61
59668406--59668462	28	2.0	29	89	3	89	50	24	0	24	1.49
59668473--59668528	25	2.2	25	87	6	78	53	19	1	25	1.55
59670417--59670466	21	2.4	21	96	0	91	34	18	48	0	1.48
59670819--59671044	43	5.3	43	87	2	276	27	19	28	24	1.99
59674086--59674132	21	2.2	22	92	3	78	21	19	38	21	1.94
59677120--59677196	31	2.5	30	77	6	75	50	6	0	42	1.28
59683741--59683770	9	3.3	9	95	0	51	33	0	0	66	0.92
59701235--59701300	12	5.5	12	83	0	51	12	40	0	46	1.41
59701234--59701298	18	3.6	18	89	0	85	12	40	0	47	1.41
59701983--59702052	9	7.6	9	74	15	54	65	1	1	31	1.10
59701997--59702043	19	2.4	20	85	3	60	65	0	2	31	1.04
59702047--59702093	21	2.3	21	85	3	60	55	8	0	36	1.31
59702591--59702745	9	16.6	9	67	15	64	34	2	5	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59702684--59702747	29	2.3	27	81	5	65	34	1	3	60	1.22
59705831--59705896	29	2.2	29	86	2	87	66	0	1	31	1.01
59705963--59706009	22	2.1	22	88	0	67	44	0	29	25	1.54
59716771--59716803	11	3.1	11	86	4	50	69	0	9	21	1.15
59716983--59717071	45	2.0	45	84	8	119	60	2	2	34	1.21
59717000--59717049	25	2.0	25	84	7	66	60	2	0	38	1.09
59722066--59722103	20	1.9	20	88	0	58	42	7	10	39	1.69
59724719--59724853	49	2.7	50	84	5	150	30	31	18	20	1.96
59729943--59730044	49	2.1	49	83	0	123	27	25	22	24	2.00
59744305--59744348	23	1.9	23	85	0	61	59	4	2	34	1.30
59747073--59747141	3	23.0	3	88	11	106	66	1	0	31	1.00
59747573--59747616	21	2.2	20	87	4	61	54	2	4	38	1.33
59752099--59752170	5	14.6	5	76	16	53	40	1	2	55	1.23
59752140--59752181	13	3.0	14	82	10	59	47	0	0	52	1.00
59753253--59753345	25	3.7	25	88	8	145	16	20	22	40	1.91
59758355--59758434	29	2.6	30	86	5	99	33	7	12	46	1.70
59758380--59758443	29	2.2	29	86	8	85	32	9	12	45	1.74
59758622--59758688	31	2.2	30	86	5	91	40	10	11	37	1.77
59768370--59768444	29	2.5	30	81	12	75	42	1	4	52	1.28
59768483--59768528	12	3.8	12	76	23	51	50	0	0	50	1.00
59768471--59768528	26	2.3	25	85	8	73	48	0	1	50	1.11
59768469--59768527	21	2.9	21	82	5	59	49	0	1	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59769374--59769450	38	2.0	38	100	0	154	40	12	20	25	1.89
59770214--59770372	39	4.1	39	99	0	300	10	19	55	15	1.68
59776935--59776978	23	1.9	23	85	0	61	34	2	4	59	1.30
59777667--59777728	22	3.0	20	88	6	81	30	1	9	58	1.40
59777660--59777735	19	3.8	19	80	11	80	32	1	9	56	1.39
59777762--59778067	49	6.3	49	83	3	379	32	0	13	54	1.44
59777768--59778014	98	2.5	98	95	0	440	32	0	11	54	1.42
59777936--59777993	22	2.9	19	73	14	53	36	1	10	51	1.46
59778055--59778176	60	2.0	60	83	0	154	30	1	14	53	1.51
59778210--59778292	38	2.2	39	95	2	150	54	4	2	38	1.35
59778329--59778370	16	2.7	15	85	7	57	38	2	2	57	1.25
59782801--59782845	22	2.1	21	87	4	63	2	31	2	64	1.18
59782803--59782854	18	2.8	17	76	23	52	1	34	1	61	1.18
59782999--59783050	26	2.0	26	85	7	70	48	3	1	46	1.31
59792097--59792173	39	2.0	39	94	0	136	35	27	16	20	1.95
59795513--59795666	50	3.1	50	96	1	274	17	9	35	38	1.82
59810123--59810153	2	15.5	2	100	0	62	48	0	0	51	1.00
59823596--59823620	2	12.5	2	100	0	50	0	52	0	48	1.00
59826285--59826341	27	2.1	27	93	0	96	59	5	8	26	1.48
59828090--59828246	78	2.0	78	94	0	278	28	12	20	38	1.89
59830696--59830739	6	7.3	6	100	0	88	15	36	15	31	1.90
59832932--59832988	17	3.4	17	80	7	62	22	0	24	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59837603--59837699	25	3.9	25	78	2	79	22	26	15	35	1.94
59839804--59839878	33	2.3	33	86	4	107	62	12	9	16	1.53
59842159--59842227	31	2.3	31	85	7	88	42	21	11	24	1.86
59843965--59843994	5	6.0	5	100	0	60	20	20	0	60	1.37
59849743--59849790	18	2.8	17	81	12	62	68	2	2	27	1.11
59849770--59849813	23	1.9	23	86	9	63	72	4	0	22	1.02
59850022--59850081	27	2.2	28	81	3	68	45	3	0	51	1.17
59851355--59851473	60	2.0	60	91	0	193	52	12	0	33	1.45
59851599--59851652	27	2.0	27	85	7	74	22	33	27	16	1.95
59851744--59851787	23	1.9	23	81	9	54	61	0	2	36	1.09
59855453--59855494	18	2.3	18	84	12	59	52	2	0	45	1.13
59855456--59855494	17	2.2	17	90	4	60	51	2	0	46	1.14
59856387--59856417	14	2.2	14	100	0	62	51	12	6	29	1.65
59862136--59862299	49	3.3	49	80	10	181	34	21	27	17	1.95
59862184--59862322	74	1.9	74	83	8	185	34	18	28	18	1.95
59862128--59862322	25	7.9	25	75	12	145	34	20	26	18	1.95
59862282--59862339	25	2.3	25	81	0	62	32	17	27	22	1.96
59862156--59862339	99	1.9	99	79	4	210	34	19	27	18	1.95
59881169--59881204	15	2.5	14	86	8	54	44	8	0	47	1.33
59881762--59881806	4	10.2	4	82	17	54	22	0	4	73	1.01
59881753--59881810	10	5.6	10	84	8	62	24	0	3	72	1.00
59881753--59881815	14	4.3	14	75	16	56	23	0	3	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59882927--59882986	22	2.8	21	84	5	66	16	10	48	25	1.77
59889254--59889289	15	2.5	14	86	8	54	44	8	0	47	1.33
59905395--59905431	17	2.2	17	95	0	65	27	0	21	51	1.48
59906658--59906797	46	3.0	46	92	0	226	33	7	28	30	1.85
59908648--59908770	28	4.4	28	92	2	185	33	27	12	26	1.92
59913611--59913661	25	2.0	25	81	7	59	9	33	1	54	1.44
59917764--59917802	18	2.2	17	86	13	53	33	0	20	46	1.51
59917907--59917935	8	3.6	8	100	0	58	24	13	27	34	1.93
59918022--59918097	23	3.3	23	96	0	143	21	21	26	31	1.98
59925107--59925145	18	2.2	17	86	13	53	33	0	20	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211