genome.fa.s21.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  112  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35383824--35383859	18	2.0	18	88	0	54	16	16	0	66	1.25
35383824--35383858	12	2.9	12	82	0	52	17	17	0	65	1.27
35388742--35388779	15	2.5	15	95	0	67	13	34	7	44	1.72
35389413--35389459	19	2.5	19	89	6	69	42	4	4	48	1.42
35391407--35391460	17	3.2	17	77	15	67	55	5	31	7	1.51
35395994--35396115	43	2.8	43	80	11	133	31	29	16	22	1.95
35398920--35398969	18	2.7	18	79	11	57	22	26	34	18	1.96
35399489--35399519	16	1.9	16	93	0	53	12	16	12	58	1.64
35406508--35406567	15	4.0	15	73	16	61	50	5	20	25	1.68
35406510--35406568	30	2.0	30	83	6	75	50	3	20	25	1.63
35411596--35411690	40	2.4	40	87	0	145	12	15	27	44	1.83
35417913--35417971	3	19.0	3	74	19	50	64	1	3	30	1.20
35417913--35417971	10	6.3	9	75	16	50	64	1	3	30	1.20
35419425--35419611	44	4.2	44	73	8	164	27	25	16	30	1.97
35419588--35420161	132	4.3	132	88	3	789	28	25	19	27	1.99
35419586--35420165	265	2.2	263	87	2	815	28	25	19	27	1.99
35420761--35420822	3	20.0	3	75	18	56	64	1	3	30	1.19
35420764--35420822	13	4.5	13	79	12	75	64	1	3	30	1.20
35420749--35420822	16	4.4	17	78	16	73	62	2	2	32	1.23
35425011--35425039	13	2.2	13	100	0	58	58	6	13	20	1.58
35425057--35425119	20	3.1	20	68	19	58	36	11	4	47	1.60
35425652--35425682	15	2.1	15	100	0	62	35	6	12	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35427256--35427282	11	2.5	11	100	0	54	22	7	18	51	1.70
35428714--35428759	18	2.7	18	86	6	60	45	0	2	52	1.13
35428679--35428886	91	2.3	91	88	2	301	46	3	3	46	1.37
35428679--35428807	44	2.8	44	70	17	111	45	3	4	46	1.39
35428790--35428861	28	2.6	28	82	8	76	43	2	4	50	1.36
35428907--35428958	15	3.6	15	80	12	56	44	0	1	53	1.11
35428940--35429137	66	3.2	66	67	22	201	42	3	6	47	1.44
35428902--35429194	120	2.4	120	98	0	568	42	2	5	49	1.37
35428975--35429162	61	3.1	61	67	17	183	43	2	6	47	1.40
35429027--35429078	15	3.6	15	80	12	56	44	0	1	53	1.11
35429325--35429429	44	2.5	40	76	15	113	31	29	4	34	1.78
35429323--35429431	45	2.6	44	81	8	129	31	29	5	33	1.80
35429411--35429448	16	2.4	16	86	0	58	28	34	2	34	1.71
35431361--35431628	50	5.3	50	82	4	297	33	26	12	26	1.92
35431344--35431600	25	10.2	25	68	20	108	35	26	12	26	1.91
35438917--35438952	17	2.1	17	89	0	54	22	0	8	69	1.15
35439759--35439801	16	2.7	16	88	0	59	13	25	11	48	1.77
35440837--35440901	30	2.2	30	100	0	130	20	9	15	55	1.67
35443131--35443166	13	2.8	14	84	16	51	27	25	0	47	1.52
35443118--35443158	18	2.2	19	87	12	59	29	24	0	46	1.53
35443654--35443692	18	2.1	19	90	4	62	48	10	0	41	1.37
35445006--35445062	5	11.0	5	78	14	62	56	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35445005--35445060	12	4.5	12	81	16	69	55	1	0	42	1.10
35445007--35445062	26	2.2	26	90	6	69	55	1	0	42	1.10
35445924--35445977	19	2.8	19	97	0	99	16	33	14	35	1.90
35450227--35450367	50	2.8	50	79	0	156	24	19	22	32	1.97
35450227--35450389	50	3.3	50	76	5	150	25	20	23	30	1.98
35450493--35450579	44	2.0	44	90	0	138	25	24	20	29	1.99
35450443--35450708	142	1.9	142	88	1	399	29	22	17	30	1.97
35450902--35451171	44	6.3	43	70	11	158	25	20	20	33	1.97
35450889--35451090	87	2.3	87	93	1	334	24	21	20	33	1.97
35450679--35451003	127	2.6	127	76	7	320	24	21	22	31	1.98
35450974--35451221	127	2.0	127	91	0	406	23	20	22	33	1.97
35450889--35451116	87	2.6	85	74	13	205	23	23	20	32	1.98
35450775--35451214	214	2.1	214	87	1	632	23	20	22	33	1.97
35450775--35451353	214	2.7	213	83	6	537	23	21	22	32	1.98
35452618--35452655	7	5.4	7	81	12	51	13	15	0	71	1.16
35452618--35452658	15	2.8	16	79	20	54	12	19	0	68	1.21
35452621--35452667	21	2.4	20	86	10	62	10	21	0	68	1.20
35457396--35457482	45	1.9	43	81	11	102	50	2	10	36	1.49
35459590--35459729	51	2.9	49	76	7	151	43	5	4	46	1.47
35462070--35462232	40	4.1	40	86	0	227	28	21	23	26	1.99
35462267--35462610	40	8.8	40	72	8	267	28	19	22	29	1.98
35462083--35462667	194	3.1	192	86	3	801	29	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35463004--35463052	7	7.0	7	85	0	53	22	2	30	44	1.64
35462999--35463075	14	5.4	14	75	14	68	24	2	25	46	1.65
35463067--35463115	14	3.4	15	81	13	50	24	0	26	48	1.51
35463134--35463170	14	2.6	14	86	0	56	21	2	43	32	1.67
35468939--35469167	43	5.3	42	78	6	181	23	14	26	36	1.93
35476361--35476397	19	1.9	19	88	0	56	35	2	10	51	1.51
35480658--35480772	35	3.3	34	80	4	131	36	33	11	18	1.86
35481430--35481543	43	2.6	43	80	4	113	31	24	16	27	1.96
35481451--35481603	43	3.6	43	76	13	156	33	24	15	25	1.95
35485674--35485735	17	3.1	21	75	20	78	56	14	6	22	1.61
35487078--35487109	13	2.3	15	89	10	50	56	0	0	43	0.99
35487811--35487922	7	15.9	7	70	12	59	45	34	0	19	1.51
35487811--35488001	14	13.4	14	71	13	77	46	31	1	20	1.58
35488313--35488512	41	4.9	41	81	6	212	32	26	18	23	1.97
35488315--35488512	82	2.4	82	83	8	244	32	26	17	23	1.97
35488527--35488730	41	5.1	40	78	5	189	33	26	16	23	1.96
35488395--35488656	144	1.8	145	87	4	395	32	26	17	23	1.97
35488538--35488730	81	2.4	80	83	3	242	33	26	15	23	1.95
35492773--35492820	18	2.6	18	90	3	69	41	10	0	47	1.37
35493659--35493699	21	2.0	21	90	0	64	26	17	26	29	1.97
35493781--35493856	3	25.3	3	100	0	152	67	0	32	0	0.91
35494735--35494798	31	2.1	31	82	11	78	21	7	20	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35501876--35501956	40	2.0	40	100	0	162	45	4	14	34	1.67
35502323--35502361	19	2.1	19	95	0	69	64	0	2	33	1.08
35502978--35503055	27	2.9	27	86	0	111	24	21	26	26	1.99
35502987--35503073	27	3.2	27	83	3	95	25	24	27	22	2.00
35506215--35506362	77	1.9	79	83	6	194	59	8	6	25	1.51
35507959--35508055	42	2.3	42	89	1	142	39	12	24	23	1.89
35511631--35511665	16	2.2	16	89	0	52	65	5	0	28	1.15
35512135--35512230	49	2.0	49	93	0	165	53	15	0	31	1.43
35512340--35512397	20	2.9	20	76	19	59	1	29	0	68	0.99
35512538--35512599	27	2.3	27	91	0	97	29	24	19	27	1.98
35530774--35530856	30	2.8	29	79	3	94	27	25	10	36	1.89
35530779--35530855	29	2.6	29	79	2	82	28	24	9	37	1.86
35530959--35531034	33	2.3	33	84	15	104	26	26	17	30	1.97
35532009--35532040	16	2.0	16	100	0	64	43	12	6	37	1.68
35537587--35537627	21	2.0	20	85	4	55	56	2	0	41	1.13
35545992--35546110	54	2.2	54	96	0	220	34	20	15	29	1.94
35552567--35552596	12	2.4	13	94	5	53	20	6	6	66	1.38
35565444--35565581	60	2.3	60	81	7	147	24	9	8	57	1.59
35567579--35567614	18	2.0	18	88	0	54	58	22	5	13	1.56
35573323--35573360	17	2.2	17	100	0	76	39	5	28	26	1.78
35577190--35577245	22	2.5	23	83	11	64	69	3	0	26	1.04
35577183--35577245	7	8.4	7	77	11	63	68	3	0	28	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35577195--35577245	15	3.4	15	81	13	61	66	3	0	29	1.09
35577706--35578072	70	5.1	73	85	3	478	33	17	21	26	1.96
35578609--35578671	21	3.0	21	76	17	51	23	6	20	49	1.72
35578633--35578695	21	3.0	21	79	6	58	20	3	28	47	1.65
35579167--35579929	147	5.2	148	76	7	536	26	16	22	34	1.95
35580440--35580466	14	1.9	14	100	0	54	18	7	14	59	1.58
35580881--35581050	88	1.9	88	98	0	331	32	14	10	42	1.79
35581140--35581180	15	2.8	15	79	17	50	34	0	0	65	0.93
35581828--35582203	9	44.4	9	72	16	288	46	20	0	33	1.55
35581824--35582170	16	20.8	16	66	18	88	46	20	0	32	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211