genome.fa.s21.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  172  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53629135--53629316	89	2.1	89	87	3	260	33	8	18	39	1.82
53630335--53630408	9	8.1	9	78	16	73	28	4	1	66	1.18
53630350--53630444	18	5.2	17	74	20	77	26	3	4	66	1.25
53630351--53630445	45	2.1	45	80	7	104	27	3	4	65	1.26
53632054--53632117	32	2.0	31	90	3	101	39	23	9	28	1.86
53632332--53632487	41	3.8	41	97	0	285	26	22	21	29	1.99
53636709--53636905	41	4.8	41	91	5	308	29	20	21	27	1.98
53637124--53637185	33	2.0	32	84	9	83	27	9	24	38	1.86
53637128--53637202	33	2.3	33	76	2	80	32	8	22	37	1.83
53651753--53651946	100	1.9	99	88	1	289	26	18	12	41	1.87
53654896--53654985	45	2.0	45	97	0	171	14	28	16	40	1.88
53677524--53677569	23	2.0	23	95	4	85	43	8	0	47	1.34
53677631--53677716	27	3.2	26	85	6	100	29	25	26	18	1.98
53678293--53678351	19	3.2	19	85	4	84	49	0	11	38	1.40
53697363--53697435	31	2.4	30	82	8	85	30	8	9	52	1.63
53697575--53697693	58	2.1	57	81	9	134	36	18	20	24	1.94
53713004--53713185	59	3.1	58	79	3	161	24	13	14	46	1.81
53716170--53716208	19	2.0	20	85	5	53	33	10	0	56	1.33
53720762--53720796	14	2.5	14	90	0	52	25	17	8	48	1.75
53727045--53727141	17	5.4	17	65	13	59	34	3	12	50	1.55
53727045--53727151	37	2.9	37	92	0	178	33	3	13	49	1.59
53731452--53731595	74	1.9	74	88	2	218	32	19	13	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53737167--53737193	13	2.1	13	100	0	54	40	0	7	51	1.30
53754820--53754963	6	23.7	6	95	2	216	47	31	3	18	1.65
53789592--53790129	108	5.0	107	89	2	787	34	18	17	30	1.94
53789592--53790129	216	2.5	214	92	2	868	34	18	17	30	1.94
53790343--53790379	4	9.5	4	83	16	51	75	0	0	24	0.80
53790343--53790375	16	2.0	17	94	5	59	75	0	0	24	0.80
53790343--53790379	7	4.8	8	90	9	51	75	0	0	24	0.80
53790518--53790546	8	3.6	8	100	0	58	62	0	0	37	0.96
53792162--53792830	85	7.8	84	66	15	273	27	20	20	31	1.98
53792162--53792653	44	11.5	44	70	12	213	27	20	21	31	1.98
53792153--53792829	129	5.2	129	85	2	869	27	21	20	31	1.98
53792719--53792872	44	3.5	44	80	4	143	28	23	17	30	1.97
53793068--53793644	50	11.6	49	65	12	253	26	19	20	33	1.97
53792993--53793143	75	2.0	75	80	5	171	25	18	21	34	1.96
53792944--53793192	125	2.0	125	87	3	358	25	19	20	34	1.96
53793085--53793665	99	5.8	100	89	1	756	25	20	20	33	1.97
53794809--53794909	42	2.4	42	94	0	175	26	26	10	35	1.90
53794995--53795026	14	2.3	14	94	0	55	12	9	0	78	0.97
53799270--53799804	108	5.0	107	87	3	754	34	19	16	28	1.94
53799270--53799804	216	2.5	215	92	2	853	34	19	16	28	1.94
53800021--53800057	4	9.5	4	83	16	51	75	0	0	24	0.80
53800021--53800053	16	2.0	17	94	5	59	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53800021--53800057	7	4.8	8	90	9	51	75	0	0	24	0.80
53800195--53800223	8	3.6	8	100	0	58	62	0	0	37	0.96
53804528--53804567	21	2.0	20	85	5	53	50	20	12	17	1.78
53805255--53805345	21	4.3	21	90	2	139	24	21	27	26	1.99
53808807--53808873	22	3.0	22	74	8	64	17	22	19	40	1.92
53809090--53809137	21	2.3	21	80	16	55	50	0	18	31	1.48
53819949--53821326	725	1.9	724	92	2	2297	37	14	12	34	1.84
53830705--53830744	19	2.1	19	100	0	80	42	15	0	42	1.46
53832071--53832143	37	1.9	38	83	2	94	35	16	17	30	1.92
53835191--53835251	25	2.5	25	81	2	70	44	16	18	21	1.87
53835191--53835264	25	3.0	25	78	2	69	43	14	18	22	1.87
53835363--53835482	64	1.9	64	85	0	168	37	23	19	20	1.94
53839525--53839633	44	2.6	40	74	17	112	31	6	27	34	1.82
53839775--53839809	18	2.0	17	88	5	52	54	0	0	45	0.99
53839911--53839965	16	3.4	16	80	16	53	49	1	0	49	1.11
53839662--53839977	156	2.0	157	95	0	562	42	3	5	48	1.42
53839931--53839965	18	2.0	17	88	5	52	54	0	0	45	0.99
53840044--53840095	26	2.1	24	85	7	68	50	1	1	46	1.23
53845899--53845929	13	2.4	13	100	0	62	51	6	35	6	1.53
53846648--53846749	51	2.0	52	84	1	134	31	19	6	42	1.78
53854958--53854992	18	1.9	18	88	0	52	57	0	8	34	1.29
53857043--53857079	16	2.3	16	86	13	58	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53861867--53861908	22	2.0	22	86	9	61	14	28	14	42	1.84
53862716--53862753	20	1.9	19	89	5	58	55	2	0	42	1.14
53869434--53869467	17	2.1	17	88	5	52	50	0	17	32	1.47
53870286--53870385	42	2.4	42	91	0	155	38	10	26	26	1.87
53871068--53871093	2	13.0	2	100	0	52	50	0	0	50	1.00
53874469--53874495	14	1.9	14	100	0	54	74	0	0	25	0.83
53877399--53877438	3	13.3	3	89	0	62	37	30	0	32	1.58
53883521--53883561	3	13.7	3	94	0	64	0	60	0	39	0.96
53883512--53883552	18	2.3	18	95	0	73	2	56	0	41	1.13
53890565--53890595	14	2.2	14	94	0	53	35	35	12	16	1.87
53891436--53891469	17	1.9	18	88	5	52	58	5	0	35	1.22
53891847--53891886	20	2.0	20	90	0	62	75	2	5	17	1.10
53892847--53892900	23	2.3	24	79	17	60	25	11	7	55	1.61
53893296--53893582	96	3.0	95	90	2	450	40	1	18	39	1.61
53895427--53895617	50	3.8	50	84	2	231	23	29	20	26	1.99
53897526--53897603	26	3.0	27	83	3	70	32	2	6	58	1.37
53897560--53897620	27	2.2	27	85	8	79	37	4	0	57	1.20
53898160--53898204	17	2.6	17	85	3	54	22	4	13	60	1.51
53899323--53899372	25	2.0	24	81	11	57	62	2	4	32	1.25
53902378--53902427	19	2.8	18	80	14	68	36	8	0	56	1.29
53902522--53902592	29	2.5	29	84	6	92	32	8	4	54	1.50
53907015--53907095	20	4.1	19	84	10	101	83	0	14	1	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53907015--53907095	7	12.3	7	82	15	102	83	0	14	1	0.70
53907015--53907095	19	4.1	19	87	10	110	83	0	14	1	0.70
53907361--53907899	106	5.1	106	94	1	920	25	16	7	49	1.73
53908811--53909438	46	13.3	46	83	6	720	25	16	27	31	1.96
53908811--53909438	138	4.4	139	85	7	814	25	16	27	31	1.96
53909112--53909235	62	2.0	62	96	3	232	24	13	33	28	1.93
53909065--53909281	108	2.0	108	91	0	353	24	15	30	29	1.95
53909019--53909438	154	2.8	154	85	7	514	24	16	29	30	1.96
53908973--53909372	200	2.0	200	93	0	683	24	16	29	30	1.96
53908927--53909418	246	2.0	246	92	0	824	24	16	29	30	1.96
53910616--53910650	17	2.1	17	88	0	52	8	5	2	82	0.91
53911456--53911505	19	2.8	18	80	14	68	36	8	0	56	1.29
53911639--53911697	30	2.0	29	90	3	91	30	11	5	52	1.59
53914071--53914124	25	2.2	24	87	9	74	40	1	0	57	1.09
53914525--53914935	114	3.6	112	79	5	414	25	23	25	25	2.00
53916310--53916623	146	2.1	146	81	3	353	26	14	22	36	1.93
53916721--53916766	23	2.0	23	95	0	83	32	43	2	21	1.65
53918359--53918429	21	3.4	21	82	0	79	33	14	45	7	1.71
53918729--53918901	42	4.1	42	86	6	208	24	17	23	34	1.96
53918729--53919032	84	3.6	85	73	10	221	26	19	22	31	1.97
53918745--53918985	42	5.8	41	84	2	178	28	19	21	30	1.98
53919436--53919462	8	3.4	8	100	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53926081--53926133	25	2.2	24	86	3	70	30	1	5	62	1.29
53931371--53931483	60	1.9	60	85	7	158	15	26	20	38	1.92
53948200--53948384	66	2.8	66	81	3	221	22	25	24	26	2.00
53948201--53948409	66	3.2	66	79	5	174	23	25	24	25	2.00
53949006--53949913	452	2.0	453	99	0	1782	35	17	21	24	1.95
53951406--53951860	44	10.0	44	73	10	292	35	19	18	26	1.95
53951406--53951674	132	2.0	132	84	2	353	36	18	17	26	1.94
53953427--53953503	37	2.1	37	87	0	109	51	2	0	45	1.14
53956022--53956311	141	2.1	139	81	7	327	27	22	20	30	1.98
53970850--53970955	54	2.0	54	94	0	185	33	20	12	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211