genome.fa.s21.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  48  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14295005--14295390	71	5.5	70	90	4	584	33	24	15	27	1.95
14295005--14295390	140	2.8	140	93	2	625	33	24	15	27	1.95
14307180--14307227	21	2.1	23	88	11	73	62	0	2	35	1.07
14307166--14307229	21	3.0	21	69	28	53	57	1	3	37	1.24
14309489--14309948	228	2.0	228	96	0	857	33	26	10	29	1.90
14314322--14314351	15	2.0	15	93	0	51	56	6	16	20	1.62
14315012--14315041	15	2.0	15	93	0	51	20	16	6	56	1.62
14320480--14320528	3	16.3	3	91	0	71	26	0	6	67	1.14
14329047--14329092	24	1.9	24	86	0	65	41	2	0	56	1.11
14331000--14331166	82	2.0	82	84	1	219	33	15	18	32	1.92
14337787--14337845	21	2.8	21	77	10	66	28	27	16	27	1.97
14337948--14338058	50	2.2	50	95	0	195	36	25	12	26	1.91
14337998--14338150	71	2.2	72	84	2	202	32	26	14	27	1.95
14339248--14339285	19	2.0	19	100	0	76	57	0	0	42	0.98
14340166--14340198	11	2.9	12	86	13	52	66	0	0	33	0.92
14344744--14344897	47	3.3	47	82	0	146	17	14	22	46	1.84
14347824--14347853	14	2.2	13	94	5	51	20	0	33	46	1.51
14357800--14357855	18	2.8	20	81	15	71	51	1	0	46	1.11
14357800--14357879	40	2.0	40	82	4	99	50	2	2	45	1.28
14357920--14357961	19	2.1	21	86	8	61	47	0	4	47	1.23
14375947--14375976	11	2.7	11	94	0	51	50	16	10	23	1.75
14401992--14402031	17	2.5	16	88	8	55	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14409570--14409619	26	1.9	27	88	8	77	16	8	12	64	1.49
14426423--14426481	27	2.1	28	84	3	75	25	20	23	30	1.98
14426846--14427103	27	9.6	26	77	5	255	16	19	21	43	1.88
14426846--14427103	54	4.8	54	81	2	286	16	19	21	43	1.88
14426813--14427103	81	3.6	79	80	4	312	18	19	21	40	1.91
14429021--14429050	13	2.2	14	94	5	53	46	6	13	33	1.69
14429780--14429828	25	2.0	25	87	0	71	34	18	14	32	1.91
14430722--14430766	24	1.9	24	90	4	74	28	48	0	22	1.50
14431151--14431185	17	2.0	18	88	5	54	11	48	31	8	1.69
14435999--14436029	15	2.1	15	100	0	62	45	12	12	29	1.80
14439008--14439067	26	2.3	26	85	0	75	41	6	16	35	1.75
14441139--14441179	12	3.6	12	83	9	59	48	2	0	48	1.14
14445069--14445136	34	2.0	33	81	13	77	32	0	8	58	1.29
14445201--14445234	17	1.9	18	88	5	52	47	0	0	52	1.00
14447242--14447284	20	2.2	20	100	0	86	46	11	9	32	1.72
14455747--14455772	9	2.9	9	100	0	52	11	0	30	57	1.34
14458405--14458646	63	3.8	64	83	2	283	28	29	19	22	1.98
14458415--14458646	127	1.8	127	84	1	322	29	29	18	22	1.97
14461520--14461559	21	1.9	21	94	0	71	20	12	12	55	1.69
14461855--14461897	20	2.2	20	87	8	61	27	0	2	69	1.00
14461923--14461958	19	1.9	19	88	5	56	38	2	5	52	1.39
14461923--14461971	19	2.7	18	84	9	55	40	2	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14464310--14464352	19	2.3	18	80	11	50	25	2	2	69	1.12
14465399--14465424	13	2.0	13	100	0	52	46	0	0	53	1.00
14473939--14473992	23	2.3	23	75	12	56	40	0	1	57	1.09
14475173--14475206	17	1.9	17	88	5	50	52	8	5	32	1.56
14476204--14476277	29	2.5	29	82	4	85	24	13	14	47	1.81
14478907--14479128	39	5.7	39	89	4	295	30	4	21	44	1.70
14495141--14495180	20	2.0	20	85	14	55	12	10	42	35	1.76
14496214--14496265	22	2.3	23	83	3	61	57	5	0	36	1.23
14497347--14497379	16	2.0	17	94	5	59	39	0	0	60	0.97
14497341--14497403	27	2.3	27	78	5	74	30	1	0	68	0.99
14497344--14497425	43	1.9	43	92	0	137	35	1	0	63	1.02
14497403--14497442	11	3.6	11	96	0	71	47	2	0	50	1.14
14497354--14497465	43	2.6	43	84	5	127	37	1	0	60	1.07
14497398--14497466	22	3.2	21	75	6	75	40	1	0	57	1.07
14500332--14500562	89	2.6	89	82	2	257	35	15	23	25	1.94
14509141--14509408	90	3.0	90	81	5	283	34	14	23	27	1.94
14511060--14511096	20	1.9	18	89	10	56	40	0	5	54	1.24
14527620--14528859	44	27.7	43	68	12	493	31	18	22	27	1.97
14527612--14528782	178	6.5	178	77	7	757	31	18	23	26	1.97
14527843--14528268	134	3.2	134	83	1	426	31	19	23	26	1.98
14527665--14528461	312	2.6	310	85	2	1069	31	18	23	26	1.97
14528204--14528461	133	1.9	134	81	0	311	31	18	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14528284--14528693	225	1.8	225	85	2	581	31	17	21	28	1.96
14528839--14528926	45	2.0	45	86	4	124	29	21	23	25	1.99
14528957--14529444	45	11.0	45	65	15	149	28	21	23	25	1.99
14528879--14529522	89	7.2	89	85	0	788	28	22	22	25	1.99
14529519--14529932	132	3.1	132	88	1	598	29	18	24	26	1.98
14533184--14533270	25	3.5	24	78	10	95	56	5	4	33	1.44
14537130--14537166	20	1.9	18	89	10	56	37	0	8	54	1.30
14539175--14539214	20	2.0	20	90	0	62	45	0	2	52	1.14
14542123--14542165	18	2.4	18	96	0	77	27	27	20	23	1.99
14549562--14549650	40	2.2	40	76	11	92	29	17	24	28	1.98
14549824--14549965	40	3.6	40	76	11	123	29	21	20	28	1.98
14549678--14549893	116	1.9	116	85	1	299	25	21	23	29	1.99
14550484--14550549	15	4.6	14	74	12	62	21	0	37	40	1.53
14550785--14550877	21	4.4	22	77	5	84	18	1	44	36	1.57
14550806--14550873	36	1.9	36	85	8	95	17	0	44	38	1.49
14550807--14550895	36	2.5	36	81	7	92	19	0	39	41	1.51
14550801--14550877	7	10.9	7	76	13	68	19	0	41	38	1.52
14553446--14553510	9	7.7	9	71	13	57	43	16	0	40	1.49
14553442--14553531	25	3.8	24	83	13	107	43	15	0	41	1.47
14553474--14553543	12	6.0	12	70	18	58	44	15	0	40	1.47
14557486--14557522	15	2.5	15	86	0	56	54	0	16	29	1.43
14566741--14567405	50	13.4	49	62	11	161	29	21	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14566749--14568804	100	20.6	100	85	2	2601	29	20	24	25	1.99
14567143--14568507	50	27.3	50	61	8	223	29	20	23	25	1.99
14573330--14573371	14	3.3	13	78	18	52	21	7	0	71	1.09
14584905--14584945	11	3.6	11	87	12	57	73	7	2	17	1.17
14597710--14598513	44	17.1	44	65	19	256	25	21	19	33	1.96
14597655--14598509	142	6.0	142	93	1	1408	26	20	18	34	1.96
14607602--14607643	21	2.0	21	85	0	57	11	26	2	59	1.45
14616536--14616652	41	2.8	42	81	10	143	32	28	19	19	1.96
14616697--14616849	64	2.3	67	85	6	197	41	15	8	34	1.78
14616876--14617000	60	2.1	60	82	5	146	42	15	4	38	1.65
14624450--14624494	23	1.9	25	86	13	69	60	11	4	24	1.49
14625868--14625984	41	2.8	42	81	10	143	32	28	19	19	1.96
14626029--14626181	64	2.3	67	85	6	197	41	15	8	34	1.78
14626212--14626336	60	2.1	60	82	5	146	42	15	4	38	1.65
14633174--14633270	49	2.0	48	97	2	185	39	14	9	37	1.78
14633331--14633387	28	2.0	28	100	0	114	45	10	7	36	1.66
14640150--14640211	28	2.2	29	88	2	90	56	8	1	33	1.38
14641916--14641946	9	3.4	9	90	0	53	25	12	22	38	1.90
14642001--14642037	9	4.1	9	89	0	56	45	10	10	32	1.74
14642250--14642309	30	2.0	31	83	3	77	18	36	0	45	1.50
14642615--14642692	15	5.2	15	70	11	70	43	7	23	25	1.80
14642608--14642692	30	2.8	30	96	0	152	44	7	23	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14647274--14647357	15	5.6	14	68	20	55	46	7	19	27	1.75
14647267--14647381	30	3.8	30	95	0	185	45	6	21	26	1.77
14647290--14647369	15	5.3	15	69	11	65	46	7	21	25	1.77
14651254--14651315	29	2.2	29	85	2	81	29	22	11	37	1.89
14651442--14651491	24	2.1	24	84	0	64	30	26	22	22	1.99
14656578--14656802	79	2.8	78	81	10	258	25	26	21	26	2.00
14656578--14656802	119	1.9	120	82	9	291	25	26	21	26	2.00
14656578--14656802	40	5.7	39	83	8	235	25	26	21	26	2.00
14658657--14658686	14	2.2	13	94	5	51	13	16	0	70	1.18
14658627--14658789	57	2.8	59	84	8	194	28	17	5	48	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211