genome.fa.s21.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  31  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9134770--9134853	3	28.0	3	100	0	168	0	33	0	66	0.92
9138236--9138268	3	11.0	3	93	0	57	3	0	30	66	1.06
9138618--9138657	15	2.7	15	96	0	71	27	2	32	37	1.70
9138751--9138833	5	16.6	5	100	0	166	39	0	0	60	0.97
9140394--9140456	30	2.1	30	90	0	99	26	4	11	57	1.53
9150239--9150278	22	1.9	22	85	10	57	42	5	12	40	1.64
9153623--9153662	13	3.0	13	85	3	53	20	2	25	52	1.59
9153612--9153708	45	2.2	45	88	0	140	19	5	25	49	1.69
9160648--9160890	50	4.8	50	85	4	319	23	30	21	25	1.99
9161226--9161285	30	2.0	30	87	3	86	31	23	3	41	1.71
9162862--9162957	35	2.8	35	83	10	117	26	26	17	30	1.97
9164794--9164902	26	4.2	26	76	2	110	31	33	16	19	1.94
9164794--9164902	53	2.1	52	85	1	146	31	33	16	19	1.94
9167846--9167879	17	2.0	17	94	0	59	32	0	0	67	0.91
9173452--9173514	30	2.1	30	100	0	126	12	12	9	65	1.48
9185713--9185768	19	3.0	18	72	25	53	64	3	1	30	1.21
9185705--9185768	17	3.3	20	74	14	62	64	3	1	31	1.19
9187286--9187336	13	3.9	13	78	0	66	35	23	7	33	1.84
9193614--9193646	13	2.5	13	90	9	50	72	6	3	18	1.18
9194076--9194129	21	2.4	21	82	17	65	74	0	5	20	1.02
9194865--9194911	20	2.4	20	82	10	62	74	4	2	19	1.09
9195654--9195705	21	2.5	21	83	0	68	26	26	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9201416--9201454	18	2.2	17	86	13	53	33	0	20	46	1.51
9201672--9201747	23	3.3	23	96	0	143	21	21	26	31	1.98
9208731--9208769	18	2.2	17	86	13	53	33	0	20	46	1.51
9208874--9208902	8	3.6	8	100	0	58	24	13	27	34	1.93
9208989--9209064	23	3.3	23	96	0	143	21	21	26	31	1.98
9210518--9210575	26	2.2	26	87	6	82	27	15	27	29	1.96
9210465--9210575	25	4.4	25	76	10	93	26	13	27	32	1.94
9223381--9223454	25	3.0	25	75	0	76	31	21	27	20	1.98
9223555--9223635	26	3.3	25	78	13	87	34	20	22	22	1.97
9225800--9225829	10	3.0	10	95	0	51	33	0	16	50	1.46
9225954--9226079	61	2.1	58	85	4	162	51	4	3	39	1.42
9231178--9231224	24	2.0	24	95	0	85	46	6	25	21	1.74
9233413--9233447	17	2.1	17	94	0	61	31	17	14	37	1.89
9236110--9236162	18	3.0	17	77	5	52	37	3	0	58	1.16
9240589--9240792	87	2.3	88	85	5	279	37	21	9	30	1.86
9240589--9240837	88	2.8	87	83	8	281	38	20	10	30	1.87
9240588--9240837	89	2.8	86	80	11	267	38	20	10	30	1.87
9240971--9241018	23	2.1	23	84	3	62	58	0	0	41	0.98
9241025--9241076	20	2.7	19	74	14	52	61	1	3	32	1.25
9241258--9241510	9	26.0	9	66	18	57	28	5	1	64	1.27
9241261--9241335	21	3.7	21	75	13	68	28	8	2	61	1.38
9241258--9241345	39	2.3	39	77	13	92	29	6	2	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9241332--9241415	11	8.0	11	69	15	70	27	3	1	67	1.14
9241303--9241434	30	4.4	29	76	16	101	28	5	2	64	1.27
9241258--9241415	21	7.8	21	68	15	66	29	5	1	63	1.28
9241607--9241873	89	3.0	86	84	5	347	29	11	22	35	1.90
9253705--9253762	30	1.9	30	89	0	89	41	3	24	31	1.71
9253974--9254005	13	2.5	13	94	0	55	31	0	12	56	1.37
9254100--9254341	50	4.7	50	86	4	297	26	24	29	19	1.99
9254100--9254349	100	2.4	103	88	6	364	26	24	29	20	1.99
9261294--9261351	30	1.9	30	89	0	89	41	3	24	31	1.71
9261563--9261594	13	2.5	13	94	0	55	31	0	12	56	1.37
9261689--9261930	50	4.7	50	86	4	297	26	24	29	19	1.99
9261689--9261938	100	2.4	103	88	6	364	26	24	29	20	1.99
9267301--9267405	52	2.0	52	94	0	183	31	15	20	32	1.94
9276817--9276897	37	2.1	39	78	17	98	45	1	3	49	1.27
9277057--9277143	44	2.0	44	90	6	140	37	21	4	35	1.74
9277130--9277185	16	3.5	16	87	0	76	28	23	8	39	1.85
9288017--9288113	49	2.0	49	81	0	113	45	13	17	23	1.84
9291402--9291569	73	2.3	73	82	4	194	20	25	16	37	1.93
9291521--9291602	25	3.3	25	82	3	94	20	23	21	34	1.97
9293521--9293578	26	2.2	26	84	6	73	20	22	18	37	1.94
9298013--9298180	25	6.8	25	72	14	100	16	27	20	35	1.94
9298018--9298180	49	3.3	49	72	13	140	16	27	19	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9298013--9298180	73	2.3	73	82	4	185	16	27	20	35	1.94
9298135--9298193	25	2.4	25	88	5	84	20	27	22	30	1.98
9298133--9298213	25	3.2	25	82	6	67	22	23	20	33	1.97
9300484--9300540	28	2.0	28	93	0	96	56	10	7	26	1.59
9302219--9302259	21	2.0	22	85	9	59	39	4	2	53	1.35
9304720--9304765	23	2.0	22	84	12	58	63	8	2	26	1.35
9309172--9309252	38	2.2	38	97	2	155	40	12	11	35	1.78
9309266--9309301	18	2.0	18	88	0	54	72	0	16	11	1.12
9323387--9323436	25	2.0	25	96	0	91	30	10	20	40	1.85
9323893--9324159	89	3.0	89	82	1	338	26	24	24	25	2.00
9325987--9326027	21	2.0	21	95	0	73	36	2	4	56	1.34
9336356--9336402	21	2.2	22	92	3	78	21	38	19	21	1.94
9345253--9345298	18	2.6	18	89	6	67	21	34	0	43	1.53
9349470--9349581	32	3.5	32	82	9	147	42	10	10	35	1.74
9351690--9351811	23	5.3	23	86	3	183	29	24	20	25	1.99
9352036--9352073	18	2.2	17	86	13	51	47	18	0	34	1.49
9353045--9353076	10	3.1	10	95	4	55	71	0	0	28	0.86
9354526--9354573	13	3.8	13	81	13	55	62	2	2	33	1.18
9354861--9354916	29	2.0	29	85	3	78	42	10	7	39	1.67
9361316--9361355	20	2.0	20	100	0	80	15	50	0	35	1.44
9367631--9367720	37	2.5	37	91	7	143	35	28	10	25	1.88
9367945--9368113	41	4.1	41	93	0	284	23	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9367945--9368113	82	2.1	82	97	0	320	23	27	20	27	1.99
9368233--9368271	17	2.2	18	86	4	53	38	12	5	43	1.65
9368338--9368381	17	2.7	17	89	6	65	43	18	2	36	1.63
9371984--9372111	37	3.5	37	77	6	134	52	10	20	16	1.73
9371984--9372126	37	3.9	35	75	10	108	51	12	18	17	1.77
9371984--9372135	73	2.1	72	79	8	164	52	13	17	16	1.74
9377855--9377989	37	3.7	37	76	4	96	48	13	16	22	1.80
9377871--9377989	37	3.2	37	78	3	98	49	14	14	21	1.78
9380690--9380719	2	15.0	2	100	0	60	0	0	50	50	1.00
9380845--9380973	43	3.0	44	77	16	151	22	17	27	32	1.96
9381078--9381123	23	2.0	23	95	0	83	34	10	13	41	1.79
9383658--9383744	37	2.4	37	88	7	124	49	11	21	17	1.78
9383658--9383771	37	3.1	37	79	12	110	50	10	21	18	1.76
9387441--9387479	14	2.8	14	84	0	51	33	2	7	56	1.41
9389024--9389054	15	2.1	15	100	0	62	22	32	6	38	1.80
9393357--9393387	15	2.1	15	93	0	53	25	32	3	38	1.72
9401022--9401076	29	1.9	29	96	3	103	38	9	0	52	1.33
9402641--9402695	27	2.0	27	92	0	92	18	10	10	60	1.59
9409851--9409901	21	2.4	21	76	0	57	64	5	5	23	1.38
9410652--9410694	19	2.4	17	81	14	50	48	6	6	37	1.57
9412739--9412784	9	4.7	10	81	10	51	67	2	0	30	1.03
9416864--9416898	15	2.3	15	95	0	61	62	14	0	22	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9425503--9425583	21	3.5	22	79	12	83	54	2	0	43	1.13
9432226--9432264	19	2.1	19	85	9	53	51	0	20	28	1.48
9435470--9435495	3	8.7	3	100	0	52	34	34	0	30	1.58
9437535--9437605	29	2.4	29	83	0	79	28	19	22	29	1.98
9437568--9437624	29	2.0	29	82	0	69	24	17	26	31	1.97
9437900--9437966	30	2.3	30	79	7	75	23	13	25	37	1.92
9441075--9441103	14	2.0	15	93	6	51	48	20	0	31	1.50
9441998--9442028	16	1.9	16	100	0	62	25	19	25	29	1.99
9445295--9445332	20	2.1	18	85	14	51	28	0	13	57	1.36
9445803--9445916	46	2.5	46	92	0	201	42	17	19	21	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211