genome.fa.s21.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  97  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30415864--30415912	22	2.2	23	88	3	73	69	0	6	24	1.11
30420383--30420465	23	3.6	23	90	0	130	30	24	21	24	1.99
30420383--30420481	46	2.2	46	92	3	164	31	23	21	24	1.98
30420383--30420476	23	4.1	23	87	2	127	31	24	21	22	1.98
30420699--30420737	18	2.2	17	86	13	53	46	20	0	33	1.51
30420918--30420976	30	2.0	30	83	6	75	27	25	10	37	1.88
30422649--30422674	7	3.7	7	100	0	52	26	0	15	57	1.38
30423292--30423334	18	2.4	18	84	0	50	18	25	11	44	1.84
30426759--30426830	37	1.9	37	100	0	144	8	27	4	59	1.45
30440458--30440508	26	2.0	26	96	0	93	29	35	23	11	1.90
30440321--30440685	102	3.6	103	94	3	616	30	30	20	19	1.97
30440560--30440611	26	2.0	26	96	0	95	28	34	23	13	1.92
30447902--30448273	104	3.6	105	94	2	642	30	30	19	18	1.96
30448143--30448194	26	2.0	26	92	0	86	30	34	21	13	1.92
30458522--30458571	20	2.3	20	80	10	55	56	12	8	24	1.62
30483539--30483601	27	2.3	28	94	2	110	41	11	0	47	1.39
30483653--30483704	27	1.9	27	96	0	95	30	23	32	13	1.93
30484026--30484058	15	2.2	15	100	0	66	21	12	12	54	1.69
30484686--30484744	27	2.2	27	87	0	82	13	28	27	30	1.94
30484798--30484863	28	2.4	28	94	0	114	46	1	10	40	1.47
30485197--30485245	23	2.0	23	88	7	71	24	10	2	63	1.37
30499455--30499511	30	2.0	29	86	6	80	28	15	10	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30499968--30500022	22	2.6	21	88	2	83	20	9	29	41	1.82
30499968--30500064	21	4.6	21	77	13	92	23	11	29	35	1.90
30507418--30507476	30	1.9	31	89	3	93	40	0	38	20	1.53
30508684--30508777	47	1.9	50	87	6	140	32	20	12	34	1.90
30526713--30526836	50	2.5	50	81	0	131	29	24	27	19	1.98
30537012--30537049	17	2.2	18	85	4	51	63	2	23	10	1.39
30537031--30537085	12	4.6	12	73	15	51	63	0	23	12	1.29
30543154--30543461	40	7.7	40	88	1	431	25	22	27	25	2.00
30546757--30547248	47	10.3	47	93	2	786	32	8	29	29	1.87
30546757--30547248	96	5.1	95	93	2	799	32	8	29	29	1.87
30553952--30554002	24	2.1	24	92	0	84	27	3	5	62	1.36
30556336--30556369	17	2.0	17	88	11	52	44	0	0	55	0.99
30556590--30556640	13	3.9	13	78	0	66	35	25	7	31	1.85
30556590--30556642	26	2.0	26	88	0	79	35	24	7	32	1.84
30561381--30561714	50	6.6	50	83	5	343	23	28	20	27	1.99
30575791--30575918	25	5.1	25	82	7	143	28	18	21	31	1.97
30581472--30581505	17	2.1	16	88	5	50	55	0	5	38	1.24
30584282--30584329	22	2.2	22	85	10	64	56	4	14	25	1.56
30598021--30598140	41	3.0	40	81	2	123	20	20	27	30	1.98
30600335--30600374	20	2.0	21	85	5	55	75	7	7	10	1.20
30604502--30604767	103	2.6	104	90	3	419	19	20	29	29	1.97
30611965--30612230	103	2.6	104	90	3	419	19	20	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30623536--30623581	24	1.9	24	86	8	67	21	2	8	67	1.29
30626900--30627044	37	3.9	37	92	0	227	24	31	20	23	1.98
30627163--30627715	47	11.6	47	93	1	917	29	30	8	32	1.86
30631562--30631906	39	8.8	40	91	4	551	25	29	22	22	1.99
30631562--30631906	118	2.9	118	92	3	545	25	29	22	22	1.99
30633164--30633301	34	3.9	35	83	10	149	25	31	20	22	1.98
30633170--30633301	70	1.9	69	85	6	185	25	31	18	23	1.98
30633420--30633968	47	11.6	47	95	1	958	29	29	8	32	1.87
30633431--30633995	283	2.0	280	91	3	920	30	29	8	32	1.86
30637621--30637698	39	2.0	39	94	0	138	17	39	6	35	1.76
30637682--30637721	20	2.0	20	95	0	71	10	42	5	42	1.60
30639363--30639395	17	1.9	17	93	0	57	36	3	9	51	1.49
30639404--30639442	16	2.5	16	83	4	53	46	0	7	46	1.31
30639374--30639523	61	2.5	61	80	4	178	41	4	8	46	1.52
30639508--30639549	19	2.2	19	83	8	50	40	0	2	57	1.12
30639655--30639700	7	6.6	7	78	16	51	58	10	2	28	1.43
30639696--30639753	21	2.8	20	80	15	73	43	13	3	39	1.61
30639643--30639842	95	2.1	96	89	0	303	46	14	3	35	1.62
30639758--30639794	15	2.7	14	84	15	51	56	13	0	29	1.37
30639758--30639795	7	5.6	7	82	17	53	57	13	0	28	1.36
30639738--30639808	27	2.7	27	70	10	65	49	12	1	36	1.50
30639791--30639842	22	2.4	21	83	3	59	38	19	3	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30639902--30640667	9	86.2	9	76	5	682	48	18	1	31	1.56
30640451--30640621	25	6.7	26	75	14	94	43	18	1	36	1.58
30640602--30640674	32	2.2	33	85	9	96	47	19	1	31	1.58
30645288--30645340	21	2.6	21	82	8	65	37	20	37	3	1.71
30645738--30645940	42	4.8	42	93	0	352	21	21	23	33	1.97
30645655--30645939	126	2.3	126	81	3	310	25	20	21	32	1.97
30648326--30648376	6	8.2	6	79	16	50	74	0	3	21	0.98
30649621--30649680	30	2.0	30	100	0	120	20	13	20	46	1.83
30653177--30653214	17	2.2	18	85	4	51	63	2	23	10	1.39
30653196--30653250	12	4.6	12	73	15	51	63	0	23	12	1.29
30655765--30656362	47	12.6	47	93	1	953	29	29	8	32	1.87
30655765--30656362	192	3.1	190	93	3	983	29	29	8	32	1.87
30655765--30656363	286	2.1	286	95	0	1081	29	29	8	32	1.87
30659925--30660311	40	9.7	40	89	1	582	24	27	22	25	2.00
30659925--30660311	159	2.4	158	91	2	596	24	27	22	25	2.00
30664473--30665153	47	14.6	47	91	3	1076	33	8	29	29	1.87
30664473--30665153	234	2.9	235	92	3	1094	33	8	29	29	1.87
30665271--30665408	73	1.9	74	92	1	233	23	18	31	25	1.98
30665271--30665408	37	3.8	37	92	1	224	23	18	31	25	1.98
30666683--30667013	46	7.1	46	83	7	269	30	29	7	32	1.86
30666734--30667013	141	2.0	141	87	8	410	31	27	7	33	1.85
30666974--30667050	37	2.1	37	88	9	113	28	29	10	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30667107--30667234	51	2.4	54	80	16	158	32	25	7	34	1.85
30669456--30669582	39	3.3	40	83	5	154	27	28	20	23	1.99
30669456--30669635	40	4.6	38	78	12	152	27	27	21	23	1.99
30677348--30677476	39	3.3	40	79	10	158	28	27	19	24	1.98
30677311--30677529	78	2.8	78	78	7	185	26	27	20	24	1.99
30677351--30677529	78	2.3	80	81	10	208	27	27	20	24	1.99
30679062--30696259	194	89.0	194	97	1	32737	28	15	21	34	1.94
30704569--30704619	21	2.4	21	84	15	70	25	29	3	41	1.73
30712055--30712123	25	2.8	25	91	4	104	28	20	20	30	1.97
30719332--30719393	30	2.1	30	84	6	81	48	12	6	32	1.67
30729469--30729536	20	3.5	20	70	9	59	35	22	27	14	1.93
30729473--30729584	40	2.8	40	86	2	145	35	20	25	17	1.95
30729481--30729586	20	5.3	20	70	4	61	34	19	26	18	1.95
30734014--30734053	19	2.1	19	100	0	80	27	0	20	52	1.46
30740786--30740900	57	2.0	58	84	1	151	36	13	17	32	1.89
30749453--30749786	169	2.0	169	96	0	623	32	18	14	34	1.91
30750641--30750754	45	2.5	45	84	0	138	29	4	31	34	1.77
30751392--30751436	20	2.2	20	84	7	56	51	11	6	31	1.63
30756053--30756103	26	1.9	27	84	4	68	7	17	3	70	1.27
30758209--30758250	12	3.4	12	80	6	57	21	7	4	66	1.35
30758451--30758564	22	5.1	22	72	4	102	28	6	33	32	1.82
30758451--30758564	45	2.5	45	88	0	156	28	6	33	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30758451--30758567	23	5.2	23	69	9	80	28	5	33	32	1.81
30759456--30759500	20	2.2	20	84	7	56	51	11	6	31	1.63
30766669--30767190	174	3.0	172	92	1	873	27	11	21	38	1.88
30767921--30767976	29	1.9	29	85	7	78	16	10	8	64	1.49
30771615--30771679	25	2.6	25	77	0	67	27	9	21	41	1.83
30773231--30773274	16	2.6	17	89	7	63	68	0	0	31	0.90
30773511--30773591	37	2.2	37	88	0	117	34	8	14	41	1.77
30773901--30773946	20	2.3	20	81	3	58	30	2	0	67	1.03
30774606--30774682	28	2.6	30	85	8	122	48	0	3	48	1.20
30774868--30774930	28	2.2	28	72	10	65	36	9	14	39	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211