genome.fa.s21.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  180  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55870536--55870618	34	2.3	37	83	10	100	22	4	3	68	1.24
55870516--55870592	29	2.8	29	83	13	99	23	2	2	71	1.11
55870549--55870612	23	2.8	23	81	11	71	23	4	3	68	1.23
55876773--55876915	49	2.9	48	68	7	115	32	26	16	24	1.96
55876691--55877490	100	8.0	100	82	4	801	32	22	20	24	1.98
55876703--55877476	50	15.5	50	67	7	266	32	22	20	24	1.98
55879276--55879317	21	2.0	22	85	4	59	45	7	4	42	1.52
55879611--55879690	29	2.8	28	75	14	83	23	2	2	71	1.11
55879618--55879690	14	5.4	12	73	20	56	24	2	1	71	1.07
55879622--55879695	17	4.6	17	71	21	54	24	2	1	71	1.07
55879631--55879713	34	2.3	37	83	10	100	22	4	3	68	1.24
55879644--55879707	23	2.8	23	81	11	71	23	4	3	68	1.23
55881401--55881447	17	2.8	17	74	3	51	23	6	2	68	1.24
55884394--55884560	43	3.9	43	78	10	155	22	20	25	32	1.98
55884376--55884538	86	1.9	86	81	7	197	23	20	24	31	1.98
55884416--55884580	43	3.8	43	78	9	122	21	22	23	32	1.98
55884416--55884580	86	1.9	86	82	4	208	21	22	23	32	1.98
55884548--55884705	42	3.6	43	77	7	151	26	31	18	23	1.98
55885014--55885125	21	5.3	21	84	0	107	4	39	17	38	1.70
55885097--55885243	66	2.2	66	85	4	190	12	28	19	39	1.88
55885136--55885263	66	1.9	66	85	3	177	14	25	19	40	1.90
55886881--55887149	9	31.7	9	64	18	60	37	3	14	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55886881--55886914	16	2.1	16	94	0	59	32	0	14	52	1.42
55886895--55886950	25	2.2	25	83	0	67	35	3	14	46	1.62
55886994--55887072	34	2.3	34	80	0	86	41	1	13	43	1.53
55887072--55887224	34	4.7	34	80	9	183	37	3	10	48	1.54
55887078--55887317	31	7.9	30	77	14	203	37	3	10	48	1.54
55887167--55887317	56	2.7	56	97	0	284	38	2	11	47	1.53
55887409--55887461	24	2.2	24	96	0	97	49	3	3	43	1.38
55888933--55888970	17	2.2	17	95	0	67	39	13	36	10	1.79
55889211--55889278	33	2.1	33	94	0	118	35	29	2	32	1.73
55889500--55889538	16	2.6	15	84	11	53	35	5	35	23	1.77
55889514--55889570	23	2.4	22	80	13	60	36	1	42	19	1.62
55889533--55889586	23	2.3	23	84	6	65	38	1	38	20	1.63
55891583--55891840	41	6.3	41	87	3	367	32	27	24	14	1.95
55891582--55891842	83	3.2	83	86	3	386	33	27	24	14	1.94
55893569--55893613	22	2.0	22	95	0	81	20	22	11	46	1.81
55895174--55895213	9	4.4	9	93	0	71	27	10	20	42	1.83
55897886--55897928	20	2.2	20	92	8	72	32	0	0	67	0.91
55897886--55897987	21	5.1	19	71	18	66	35	3	0	60	1.15
55897946--55897996	21	2.4	21	81	15	52	39	3	1	54	1.30
55898129--55898186	29	2.0	29	93	0	98	29	18	25	25	1.98
55899411--55899444	18	1.9	17	88	5	50	14	29	2	52	1.56
55902377--55902513	68	2.0	68	100	0	274	26	11	14	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55902511--55902549	14	2.8	14	92	0	60	35	17	7	38	1.79
55904894--55905004	21	5.1	21	88	8	168	54	33	1	9	1.44
55904894--55905004	46	2.5	44	91	5	172	54	33	1	9	1.44
55908134--55908167	6	5.5	6	96	3	59	82	2	0	14	0.79
55911161--55911228	28	2.5	28	86	9	88	52	11	0	35	1.38
55915972--55916032	26	2.5	26	79	12	67	59	0	0	40	0.98
55915973--55916036	25	2.6	26	74	16	73	59	0	0	40	0.97
55916002--55916062	18	3.4	18	71	8	61	49	0	3	47	1.18
55917023--55917053	16	1.9	16	93	0	53	41	3	0	54	1.16
55920316--55920620	50	5.8	50	85	3	313	22	28	21	26	1.99
55920315--55920620	56	5.8	53	84	6	333	23	28	21	26	1.99
55927474--55927818	50	6.6	51	80	7	342	24	28	21	25	1.99
55927575--55927820	106	2.3	106	92	0	411	24	28	20	26	1.99
55927473--55927828	156	2.3	155	82	9	422	24	28	21	26	1.99
55936217--55936299	24	3.4	24	75	14	80	51	9	14	24	1.71
55936202--55936347	12	11.2	13	69	18	72	52	8	13	24	1.69
55941926--55941982	11	5.1	11	79	10	62	21	29	1	47	1.61
55941924--55941982	22	2.7	22	85	10	77	20	28	1	49	1.59
55945182--55945469	126	2.3	125	90	0	450	25	22	19	31	1.98
55953583--55953607	12	2.1	12	100	0	50	16	0	0	84	0.63
55958827--55958865	20	1.9	21	89	5	62	43	0	12	43	1.42
55965290--55965327	20	1.9	20	88	0	58	60	10	21	7	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55969957--55969995	16	2.6	15	88	8	53	48	5	0	46	1.24
55975431--55975463	14	2.3	15	89	5	50	30	12	30	27	1.92
55975546--55975595	11	4.8	11	82	9	61	84	2	14	0	0.72
55975556--55975597	19	2.2	19	95	0	75	88	0	11	0	0.53
55976479--55976563	44	1.9	45	82	2	109	27	22	23	27	1.99
55978056--55978093	19	2.0	19	85	10	51	13	18	44	23	1.85
55978919--55979080	46	3.6	46	93	2	267	28	23	14	33	1.94
55982567--55982909	143	2.4	143	85	1	465	29	18	21	30	1.97
55984307--55984384	22	3.4	22	72	19	70	16	3	5	74	1.15
55987423--55987451	2	14.5	2	100	0	58	0	51	0	48	1.00
55989142--55989275	19	6.7	21	78	10	77	40	14	6	38	1.72
55989142--55989199	22	2.6	22	81	7	64	41	17	5	36	1.72
55989178--55989288	19	5.8	19	89	0	177	37	13	9	39	1.76
55989178--55989281	38	2.7	38	98	0	199	38	12	8	40	1.74
55989614--55990376	132	5.8	132	92	0	1224	28	23	18	29	1.98
55991778--55991810	14	2.3	15	89	5	50	24	33	15	27	1.95
55997219--55997352	19	6.7	21	80	10	68	40	13	5	40	1.69
55997219--55997276	22	2.6	22	81	7	64	41	17	3	37	1.66
55997255--55997365	19	5.8	19	91	0	159	37	12	8	41	1.73
56000252--56000277	13	2.0	13	100	0	52	38	23	7	30	1.83
56010750--56010902	63	2.4	64	80	7	161	29	22	25	22	1.99
56016080--56016119	14	2.9	14	84	0	53	42	17	7	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56019292--56019343	24	2.2	24	85	0	68	50	7	3	38	1.50
56023772--56023823	24	2.2	24	89	0	77	50	9	3	36	1.54
56024591--56024654	27	2.4	27	89	2	94	51	4	1	42	1.32
56024890--56024937	13	3.6	13	80	11	53	6	22	0	70	1.09
56033121--56033152	12	2.4	14	85	15	50	43	0	15	40	1.47
56034567--56034698	42	3.1	43	76	7	128	43	15	22	18	1.87
56034561--56034720	84	1.9	83	82	8	200	42	15	21	20	1.89
56034674--56034727	20	2.6	21	76	2	56	40	12	22	24	1.89
56037355--56037399	23	2.0	22	82	4	54	31	0	20	48	1.49
56037740--56037796	24	2.4	24	81	0	69	15	29	22	31	1.95
56037784--56037831	24	2.0	25	87	4	71	20	22	16	39	1.92
56038205--56038229	13	1.9	13	100	0	50	48	20	0	32	1.50
56043940--56043982	21	2.0	21	90	0	68	44	30	2	23	1.66
56043980--56044022	21	2.0	21	90	0	68	25	32	16	25	1.96
56052394--56052431	19	1.9	19	89	5	58	71	7	5	15	1.28
56052616--56052707	29	3.2	28	76	7	87	65	1	3	30	1.16
56052615--56052718	39	2.7	38	83	8	104	66	0	2	29	1.13
56052602--56052808	9	22.0	9	67	20	77	63	1	4	30	1.22
56052726--56052803	39	2.0	39	82	5	95	62	2	5	29	1.30
56052666--56052803	10	14.4	10	71	13	69	63	1	4	30	1.22
56052994--56053101	18	5.9	17	69	17	74	29	2	0	67	1.05
56053009--56053101	37	2.5	38	79	19	106	31	3	0	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56065232--56065279	20	2.4	20	75	0	51	33	27	10	29	1.90
56068887--56068911	13	1.9	13	100	0	50	8	0	24	68	1.16
56070492--56070593	41	2.5	41	90	3	152	27	19	25	27	1.99
56076402--56076426	13	1.9	13	100	0	50	8	0	24	68	1.16
56078001--56078102	41	2.5	41	90	3	152	27	19	25	27	1.99
56083913--56083937	13	1.9	13	100	0	50	8	0	24	68	1.16
56085492--56085593	41	2.5	41	90	3	152	27	19	25	27	1.99
56093240--56093296	25	2.2	26	81	12	73	42	12	12	33	1.80
56098009--56098059	24	2.1	24	96	0	93	21	23	5	49	1.71
56098113--56098225	35	3.3	34	67	5	93	28	27	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211